Merge pull request #3284 from github/mbg/ci/fix-enterprise-workflow

Fix `update-supported-enterprise-server-versions.yml` workflow

.github/actions/check-sarif/action.yml

@@ -16,5 +16,5 @@ inputs:
       Comma separated list of query ids that should NOT be included in this SARIF file.
 
 runs:
-  using: node20
+  using: node24
   main: index.js

.github/actions/prepare-test/action.yml

@@ -2,7 +2,7 @@ name: "Prepare test"
 description: Performs some preparation to run tests
 inputs:
   version:
-    description: "The version of the CodeQL CLI to use. Can be 'linked', 'default', 'nightly', 'nightly-latest', 'nightly-YYYYMMDD', or 'stable-vX.Y.Z"
+    description: "The version of the CodeQL CLI to use. Can be 'linked', 'default', 'toolcache', 'nightly', 'nightly-latest', 'nightly-YYYYMMDD', or 'stable-vX.Y.Z"
     required: true
   use-all-platform-bundle:
     description: "If true, we output a tools URL with codeql-bundle.tar.gz file rather than platform-specific URL"
@@ -41,6 +41,9 @@ runs:
         elif [[ "$VERSION" == "linked" ]]; then
           echo "tools-url=linked" >> "$GITHUB_OUTPUT"
           exit 0
+        elif [[ "$VERSION" == "toolcache" ]]; then
+          echo "tools-url=toolcache" >> "$GITHUB_OUTPUT"
+          exit 0
         elif [[ "$VERSION" == "default" ]]; then
           echo "tools-url=" >> "$GITHUB_OUTPUT"
           exit 0

.github/actions/release-initialise/action.yml

@@ -16,9 +16,9 @@ runs:
       shell: bash
 
     - name: Set up Python
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
-        python-version: 3.12
+        python-version: '3.12'
 
     - name: Install dependencies
       run: |

.github/dependabot.yml

@@ -16,9 +16,12 @@ updates:
       - dependency-name: "eslint-plugin-import"
         versions: [">=2.30.0"]
     groups:
-      npm:
+      npm-minor:
         patterns:
           - "*"
+        update-types:
+          - "minor"
+          - "patch"
   - package-ecosystem: github-actions
     directories:
       - "/.github/workflows"
@@ -28,6 +31,9 @@ updates:
     labels:
       - Rebuild
     groups:
-      actions:
+      actions-minor:
         patterns:
           - "*"
+        update-types:
+          - "minor"
+          - "patch"

.github/pull_request_template.md

@@ -1,4 +1,13 @@
-<!-- For GitHub staff: Remember that this is a public repository. -->
+<!--
+    For GitHub staff: Remember that this is a public repository. Do not link to internal resources.
+                      If necessary, link to this PR from an internal issue and include further details there.
+
+    Everyone: Include a summary of the context of this change, what it aims to accomplish, and why you
+              chose the approach you did if applicable. Indicate any open questions you want to answer
+              during the review process and anything you want reviewers to pay particular attention to.
+
+    See https://github.com/github/codeql-action/blob/main/CONTRIBUTING.md for additional information.
+-->
 
 ### Risk assessment
 
@@ -7,6 +16,44 @@ For internal use only. Please select the risk level of this change:
 - **Low risk:** Changes are fully under feature flags, or have been fully tested and validated in pre-production environments and are highly observable, or are documentation or test only.
 - **High risk:** Changes are not fully under feature flags, have limited visibility and/or cannot be tested outside of production.
 
+#### Which use cases does this change impact?
+
+<!-- Delete options that don't apply. -->
+
+- **Advanced setup** - Impacts users who have custom workflows.
+- **Default setup** - Impacts users who use default setup.
+- **Code Scanning** - Impacts Code Scanning (i.e. `analysis-kinds: code-scanning`).
+- **Code Quality** - Impacts Code Quality (i.e. `analysis-kinds: code-quality`).
+- **Third-party analyses** - Impacts third-party analyses (i.e. `upload-sarif`).
+- **GHES** - Impacts GitHub Enterprise Server.
+
+#### How did/will you validate this change?
+
+<!-- Delete options that don't apply. -->
+
+- **Test repository** - This change will be tested on a test repository before merging.
+- **Unit tests** - I am depending on unit test coverage (i.e. tests in `.test.ts` files).
+- **End-to-end tests** - I am depending on PR checks (i.e. tests in `pr-checks`).
+- **Other** - Please provide details.
+- **None** - I am not validating these changes.
+
+#### If something goes wrong after this change is released, what are the mitigation and rollback strategies?
+
+<!-- Delete strategies that don't apply. -->
+
+- **Feature flags** - All new or changed code paths can be fully disabled with corresponding feature flags.
+- **Rollback** - Change can only be disabled by rolling back the release or releasing a new version with a fix.
+- **Other** - Please provide details.
+
+#### How will you know if something goes wrong after this change is released?
+
+<!-- Delete options that don't apply. -->
+
+- **Telemetry** - I rely on existing telemetry or have made changes to the telemetry.
+    - **Dashboards** - I will watch relevant dashboards for issues after the release. Consider whether this requires this change to be released at a particular time rather than as part of a regular release.
+    - **Alerts** - New or existing monitors will trip if something goes wrong with this change.
+- **Other** - Please provide details.
+
 ### Merge / deployment checklist
 
 - Confirm this change is backwards compatible with existing workflows.

.github/sizeup.yml

@@ -0,0 +1,55 @@
+labeling:
+  applyCategoryLabels: true
+  categoryLabelPrefix: "size/"
+
+commenting:
+  addCommentWhenScoreThresholdHasBeenExceeded: false
+
+sizeup:
+  categories:
+    - name: extra small
+      lte: 25
+      label:
+        name: XS
+        description: Should be very easy to review
+        color: 3cbf00
+    - name: small
+      lte: 100
+      label:
+        name: S
+        description: Should be easy to review
+        color: 5d9801
+    - name: medium
+      lte: 250
+      label:
+        name: M
+        description: Should be of average difficulty to review
+        color: 7f7203
+    - name: large
+      lte: 500
+      label:
+        name: L
+        description: May be hard to review
+        color: a14c05
+    - name: extra large
+      lte: 1000
+      label:
+        name: XL
+        description: May be very hard to review
+        color: c32607
+    - name: extra extra large
+      label:
+        name: XXL
+        description: May be extremely hard to review
+        color: e50009
+  ignoredFilePatterns:
+    - ".github/workflows/__*"
+    - "lib/**/*"
+    - "package-lock.json"
+  testFilePatterns:
+    - "**/*.test.ts"
+  scoring:
+    # This formula and the aliases below it are written in prefix notation.
+    # For an explanation of how this works, please see:
+    # https://github.com/lerebear/sizeup-core/blob/main/README.md#prefix-notation
+    formula: "- - + additions deletions comments whitespace"

.github/update-release-branch.py

@@ -371,10 +371,10 @@ def main():
       # releases.
       run_git('revert', vOlder_update_commits[0], '--no-edit')
 
-      # Also revert the "Update checked-in dependencies" commit created by Actions.
-      update_dependencies_commit = run_git('log', '--grep', '^Update checked-in dependencies', '--format=%H').split()[0]
-      print(f'  Reverting {update_dependencies_commit}')
-      run_git('revert', update_dependencies_commit, '--no-edit')
+      # Also revert the "Rebuild" commit created by Actions.
+      rebuild_commit = run_git('log', '--grep', '^Rebuild$', '--format=%H').split()[0]
+      print(f'  Reverting {rebuild_commit}')
+      run_git('revert', rebuild_commit, '--no-edit')
 
     else:
       print('  Nothing to revert.')

.github/workflows/__analyze-ref-input.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
 defaults:
   run:
     shell: bash
@@ -70,6 +80,11 @@ jobs:
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}

.github/workflows/__bundle-from-toolcache.yml

@@ -3,7 +3,7 @@
 #     pr-checks/sync.sh
 # to regenerate this file.
 
-name: 'PR Check - Upload-sarif: code quality endpoint'
+name: 'PR Check - Bundle: From toolcache'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
@@ -21,19 +21,9 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
+    inputs: {}
   workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
+    inputs: {}
 defaults:
   run:
     shell: bash
@@ -41,14 +31,14 @@ concurrency:
   cancel-in-progress: ${{ github.event_name == 'pull_request' }}
   group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
-  upload-quality-sarif:
+  bundle-from-toolcache:
     strategy:
       fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: default
-    name: 'Upload-sarif: code quality endpoint'
+            version: toolcache
+    name: 'Bundle: From toolcache'
     if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
@@ -65,31 +55,31 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
+      - name: Install @actions/tool-cache
+        run: npm install @actions/tool-cache
+      - name: Check toolcache contains CodeQL
+        continue-on-error: true
+        uses: actions/github-script@v8
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - uses: ./../action/init
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            if (allCodeqlVersions.length === 0) {
+              throw new Error(`CodeQL could not be found in the toolcache`);
+            }
+      - id: setup-codeql
+        uses: ./../action/setup-codeql
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
-          languages: csharp,java,javascript,python
-          analysis-kinds: code-quality
-      - name: Build code
-        run: ./build.sh
-  # Generate some SARIF we can upload with the upload-sarif step
-      - uses: ./../action/analyze
+      - name: Check CodeQL is installed within the toolcache
+        uses: actions/github-script@v8
         with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-          upload: never
-      - uses: ./../action/upload-sarif
-        id: upload-sarif
-        with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-      - name: Check output from `upload-sarif` step
-        if: '!(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-quality)'
-        run: exit 1
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+            if (allCodeqlVersions.length === 0) {
+              throw new Error('CodeQL not found in toolcache');
+            }
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-zstd.yml

@@ -79,7 +79,7 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Upload SARIF
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: ${{ matrix.os }}-zstd-bundle.sarif
           path: ${{ runner.temp }}/results/javascript.sarif

.github/workflows/__config-export.yml

@@ -67,7 +67,7 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Upload SARIF
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: config-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif

.github/workflows/__config-input.yml

@@ -49,7 +49,7 @@ jobs:
       - name: Check out repository
         uses: actions/checkout@v5
       - name: Install Node.js
-        uses: actions/setup-node@v5
+        uses: actions/setup-node@v6
         with:
           node-version: 20.x
           cache: npm

.github/workflows/__diagnostics-export.yml

@@ -78,7 +78,7 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Upload SARIF
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: diagnostics-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif

.github/workflows/__export-file-baseline-information.yml

@@ -85,7 +85,7 @@ jobs:
         with:
           output: ${{ runner.temp }}/results
       - name: Upload SARIF
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: with-baseline-information-${{ matrix.os }}-${{ matrix.version }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif

.github/workflows/__job-run-uuid-sarif.yml

@@ -64,7 +64,7 @@ jobs:
         with:
           output: ${{ runner.temp }}/results
       - name: Upload SARIF
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: ${{ matrix.os }}-${{ matrix.version }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif

.github/workflows/__local-bundle.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
 defaults:
   run:
     shell: bash
@@ -70,6 +80,11 @@ jobs:
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
       - name: Fetch latest CodeQL bundle
         run: |
           wget https://github.com/github/codeql-action/releases/latest/download/codeql-bundle-linux64.tar.zst

.github/workflows/__multi-language-autodetect.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
 defaults:
   run:
     shell: bash
@@ -104,6 +114,11 @@ jobs:
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
       - name: Use Xcode 16
         if: runner.os == 'macOS' && matrix.version != 'nightly-latest'
         run: sudo xcode-select -s "/Applications/Xcode_16.app"

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
 defaults:
   run:
     shell: bash
@@ -63,7 +73,7 @@ jobs:
       - name: Check out repository
         uses: actions/checkout@v5
       - name: Install Node.js
-        uses: actions/setup-node@v5
+        uses: actions/setup-node@v6
         with:
           node-version: 20.x
           cache: npm
@@ -81,6 +91,11 @@ jobs:
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml

.github/workflows/__packaging-config-inputs-js.yml

@@ -63,7 +63,7 @@ jobs:
       - name: Check out repository
         uses: actions/checkout@v5
       - name: Install Node.js
-        uses: actions/setup-node@v5
+        uses: actions/setup-node@v6
         with:
           node-version: 20.x
           cache: npm

.github/workflows/__packaging-config-js.yml

@@ -63,7 +63,7 @@ jobs:
       - name: Check out repository
         uses: actions/checkout@v5
       - name: Install Node.js
-        uses: actions/setup-node@v5
+        uses: actions/setup-node@v6
         with:
           node-version: 20.x
           cache: npm

.github/workflows/__packaging-inputs-js.yml

@@ -63,7 +63,7 @@ jobs:
       - name: Check out repository
         uses: actions/checkout@v5
       - name: Install Node.js
-        uses: actions/setup-node@v5
+        uses: actions/setup-node@v6
         with:
           node-version: 20.x
           cache: npm

.github/workflows/__quality-queries.yml

@@ -80,9 +80,10 @@ jobs:
         with:
           output: ${{ runner.temp }}/results
           upload-database: false
+          post-processed-sarif-path: ${{ runner.temp }}/post-processed
       - name: Upload security SARIF
         if: contains(matrix.analysis-kinds, 'code-scanning')
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: |
             quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.sarif.json
@@ -90,12 +91,20 @@ jobs:
           retention-days: 7
       - name: Upload quality SARIF
         if: contains(matrix.analysis-kinds, 'code-quality')
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: |
             quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.quality.sarif.json
           path: ${{ runner.temp }}/results/javascript.quality.sarif
           retention-days: 7
+      - name: Upload post-processed SARIF
+        uses: actions/upload-artifact@v5
+        with:
+          name: |
+            post-processed-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.sarif.json
+          path: ${{ runner.temp }}/post-processed
+          retention-days: 7
+          if-no-files-found: error
       - name: Check quality query does not appear in security SARIF
         if: contains(matrix.analysis-kinds, 'code-scanning')
         uses: actions/github-script@v8

.github/workflows/__remote-config.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
 defaults:
   run:
     shell: bash
@@ -72,6 +82,11 @@ jobs:
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}

.github/workflows/__rubocop-multi-language.yml

@@ -56,7 +56,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Set up Ruby
-        uses: ruby/setup-ruby@0481980f17b760ef6bca5e8c55809102a0af1e5a # v1.263.0
+        uses: ruby/setup-ruby@d5126b9b3579e429dd52e51e68624dda2e05be25 # v1.267.0
         with:
           ruby-version: 2.6
       - name: Install Code Scanning integration

.github/workflows/__unset-environment.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
 defaults:
   run:
     shell: bash
@@ -72,6 +82,11 @@ jobs:
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
       - uses: ./../action/init
         id: init
         with:

.github/workflows/__upload-ref-sha-input.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
 defaults:
   run:
     shell: bash
@@ -70,6 +80,11 @@ jobs:
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}

.github/workflows/__upload-sarif.yml

@@ -0,0 +1,173 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Test different uses of `upload-sarif`
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  upload-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-scanning,code-quality
+    name: Test different uses of `upload-sarif`
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: csharp,java,javascript,python
+          analysis-kinds: ${{ matrix.analysis-kinds }}
+      - name: Build code
+        run: ./build.sh
+  # Generate some SARIF we can upload with the upload-sarif step
+      - uses: ./../action/analyze
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          upload: never
+          output: ${{ runner.temp }}/results
+
+      - name: |
+          Upload all SARIF files for `analysis-kinds: ${{ matrix.analysis-kinds }}`
+        uses: ./../action/upload-sarif
+        id: upload-sarif
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          sarif_file: ${{ runner.temp }}/results
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:all-files/
+      - name: Fail for missing output from `upload-sarif` step for `code-scanning`
+        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-scanning)
+        run: exit 1
+      - name: Fail for missing output from `upload-sarif` step for `code-quality`
+        if: contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-quality)
+        run: exit 1
+
+      - name: Upload single SARIF file for Code Scanning
+        uses: ./../action/upload-sarif
+        id: upload-single-sarif-code-scanning
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          sarif_file: ${{ runner.temp }}/results/javascript.sarif
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-scanning/
+      - name: Fail for missing output from `upload-single-sarif-code-scanning` step
+        if: contains(matrix.analysis-kinds, 'code-scanning') &&
+          !(fromJSON(steps.upload-single-sarif-code-scanning.outputs.sarif-ids).code-scanning)
+        run: exit 1
+      - name: Upload single SARIF file for Code Quality
+        uses: ./../action/upload-sarif
+        id: upload-single-sarif-code-quality
+        if: contains(matrix.analysis-kinds, 'code-quality')
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          sarif_file: ${{ runner.temp }}/results/javascript.quality.sarif
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-quality/
+      - name: Fail for missing output from `upload-single-sarif-code-quality` step
+        if: contains(matrix.analysis-kinds, 'code-quality') &&
+          !(fromJSON(steps.upload-single-sarif-code-quality.outputs.sarif-ids).code-quality)
+        run: exit 1
+
+      - name: Change SARIF file extension
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        run: mv ${{ runner.temp }}/results/javascript.sarif ${{ runner.temp }}/results/javascript.sarif.json
+      - name: Upload single non-`.sarif` file
+        uses: ./../action/upload-sarif
+        id: upload-single-non-sarif
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          sarif_file: ${{ runner.temp }}/results/javascript.sarif.json
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:non-sarif/
+      - name: Fail for missing output from `upload-single-non-sarif` step
+        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-non-sarif.outputs.sarif-ids).code-scanning)
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__with-checkout-path.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
 defaults:
   run:
     shell: bash
@@ -70,6 +80,11 @@ jobs:
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
       - name: Delete original checkout
         run: |
           # delete the original checkout so we don't accidentally use it.
@@ -103,29 +118,30 @@ jobs:
 
       - name: Verify SARIF after upload
         run: |
+          PAYLOAD_FILE="$RUNNER_TEMP/payload-code-scanning.json"
           EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
           EXPECTED_REF="v1.1.0"
           EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
 
-          ACTUAL_COMMIT_OID="$(cat "$RUNNER_TEMP/payload.json" | jq -r .commit_oid)"
-          ACTUAL_REF="$(cat "$RUNNER_TEMP/payload.json" | jq -r .ref)"
-          ACTUAL_CHECKOUT_URI="$(cat "$RUNNER_TEMP/payload.json" | jq -r .checkout_uri)"
+          ACTUAL_COMMIT_OID="$(cat "$PAYLOAD_FILE" | jq -r .commit_oid)"
+          ACTUAL_REF="$(cat "$PAYLOAD_FILE" | jq -r .ref)"
+          ACTUAL_CHECKOUT_URI="$(cat "$PAYLOAD_FILE" | jq -r .checkout_uri)"
 
           if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
             echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
-            echo "$RUNNER_TEMP/payload.json"
+            echo "$PAYLOAD_FILE"
             exit 1
           fi
 
           if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
             echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
-            echo "$RUNNER_TEMP/payload.json"
+            echo "$PAYLOAD_FILE"
             exit 1
           fi
 
           if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
             echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
-            echo "$RUNNER_TEMP/payload.json"
+            echo "$PAYLOAD_FILE"
             exit 1
           fi
     env:

.github/workflows/check-expected-release-files.yml

@@ -15,7 +15,7 @@ defaults:
 
 jobs:
   check-expected-release-files:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
 
     permissions:
       contents: read

.github/workflows/codeql.yml

@@ -81,7 +81,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-22.04,ubuntu-24.04,windows-2022,windows-2025,macos-13,macos-14,macos-15]
+        os: [ubuntu-22.04,ubuntu-24.04,windows-2022,windows-2025,macos-14,macos-15]
         tools: ${{ fromJson(needs.check-codeql-versions.outputs.versions) }}
     runs-on: ${{ matrix.os }}
 

.github/workflows/codescanning-config-cli.yml

@@ -56,7 +56,7 @@ jobs:
       uses: actions/checkout@v5
 
     - name: Set up Node.js
-      uses: actions/setup-node@v5
+      uses: actions/setup-node@v6
       with:
         node-version: 24
         cache: 'npm'

.github/workflows/debug-artifacts-failure-safe.yml

@@ -79,7 +79,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Download all artifacts
-        uses: actions/download-artifact@v5
+        uses: actions/download-artifact@v6
       - name: Check expected artifacts exist
         run: |
           LANGUAGES="cpp csharp go java javascript python"

.github/workflows/debug-artifacts-safe.yml

@@ -73,7 +73,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Download all artifacts
-        uses: actions/download-artifact@v5
+        uses: actions/download-artifact@v6
       - name: Check expected artifacts exist
         run: |
           VERSIONS="stable-v2.20.3 default linked nightly-latest"

.github/workflows/label-pr-size.yml

@@ -0,0 +1,26 @@
+name: Label PR with size
+
+on:
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - edited
+      - ready_for_review
+
+permissions:
+  contents: read
+  pull-requests: write
+
+jobs:
+  sizeup:
+    name: Label PR with size
+    runs-on: ubuntu-slim
+
+    steps:
+      - name: Run sizeup
+        uses: lerebear/sizeup-action@b7beb3dd273e36039e16e48e7bc690c189e61951 # 0.8.12
+        with:
+          token: "${{ secrets.GITHUB_TOKEN }}"
+          configuration-file-path: ".github/sizeup.yml"

.github/workflows/post-release-mergeback.yml

@@ -24,7 +24,7 @@ defaults:
 
 jobs:
   merge-back:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     environment: Automation
     if: github.repository == 'github/codeql-action'
     env:
@@ -47,7 +47,10 @@ jobs:
       - uses: actions/checkout@v5
         with:
           fetch-depth: 0  # ensure we have all tags and can push commits
-      - uses: actions/setup-node@v5
+      - uses: actions/setup-node@v6
+      - uses: actions/setup-python@v6
+        with:
+          python-version: '3.12'
 
       - name: Update git config
         run: |
@@ -146,6 +149,7 @@ jobs:
           private-key: ${{ secrets.AUTOMATION_PRIVATE_KEY }}
 
       - name: Create the GitHub release
+        if: steps.check.outputs.exists != 'true'
         env:
           PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
           VERSION: "${{ steps.getVersion.outputs.version }}"

.github/workflows/pr-checks.yml

@@ -35,7 +35,7 @@ jobs:
       - uses: actions/checkout@v5
 
       - name: Set up Node.js
-        uses: actions/setup-node@v5
+        uses: actions/setup-node@v6
         with:
           node-version: ${{ matrix.node-version }}
           cache: 'npm'
@@ -73,7 +73,7 @@ jobs:
         run: npm run lint-ci
 
       - name: Upload sarif
-        uses: github/codeql-action/upload-sarif@v3
+        uses: github/codeql-action/upload-sarif@v4
         if: matrix.os == 'ubuntu-latest' && matrix.node-version == 24
         with:
           sarif_file: eslint.sarif

.github/workflows/prepare-release.yml

@@ -29,7 +29,7 @@ defaults:
 jobs:
   prepare:
     name: "Prepare release"
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     if: github.repository == 'github/codeql-action'
 
     permissions:

.github/workflows/publish-immutable-action.yml

@@ -1,8 +1,10 @@
 name: 'Publish Immutable Action Version'
 
 on:
-  release:
-    types: [published]
+  push:
+    tags:
+      # Match version tags, but not the major version tags.
+      - 'v[0-9]+.**'
 
 defaults:
   run:
@@ -10,30 +12,16 @@ defaults:
 
 jobs:
   publish:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     permissions:
       contents: read
       id-token: write
       packages: write
 
     steps:
-      - name: Check release name
-        id: check
-        env:
-          RELEASE_NAME: ${{ github.event.release.name }}
-        run: |
-          echo "Release name: ${{ github.event.release.name }}"
-          if [[ $RELEASE_NAME == v* ]]; then
-            echo "This is a CodeQL Action release. Create an Immutable Action"
-            echo "is-action-release=true" >> $GITHUB_OUTPUT
-          else
-            echo "This is a CodeQL Bundle release. Do not create an Immutable Action"
-            echo "is-action-release=false" >> $GITHUB_OUTPUT
-          fi
-      - name: Checking out
-        if: steps.check.outputs.is-action-release == 'true'
+      - name: Checkout repository
         uses: actions/checkout@v5
-      - name: Publish
-        if: steps.check.outputs.is-action-release == 'true'
+
+      - name: Publish immutable release
         id: publish
         uses: actions/publish-immutable-action@v0.0.4

.github/workflows/query-filters.yml

@@ -32,7 +32,7 @@ jobs:
       uses: actions/checkout@v5
 
     - name: Install Node.js
-      uses: actions/setup-node@v5
+      uses: actions/setup-node@v6
       with:
         node-version: 24
         cache: npm

.github/workflows/script/bundle_changelog.py

@@ -0,0 +1,18 @@
+import os
+import re
+
+# Get the PR number from the PR URL.
+pr_number = os.environ['PR_URL'].split('/')[-1]
+changelog_note = f"- Update default CodeQL bundle version to {os.environ['CLI_VERSION']}. [#{pr_number}]({os.environ['PR_URL']})"
+
+# If the "[UNRELEASED]" section starts with "no user facing changes", remove that line.
+with open('CHANGELOG.md', 'r') as f:
+    changelog = f.read()
+
+changelog = changelog.replace('## [UNRELEASED]\n\nNo user facing changes.', '## [UNRELEASED]\n')
+
+# Add the changelog note to the bottom of the "[UNRELEASED]" section.
+changelog = re.sub(r'\n## (\d+\.\d+\.\d+)', f'{changelog_note}\n\n## \\1', changelog, count=1)
+
+with open('CHANGELOG.md', 'w') as f:
+    f.write(changelog)

.github/workflows/script/update-required-checks.sh

@@ -29,7 +29,7 @@ fi
 echo "Getting checks for $GITHUB_SHA"
 
 # Ignore any checks with "https://", CodeQL, LGTM, Update, and ESLint checks.
-CHECKS="$(gh api repos/github/codeql-action/commits/"${GITHUB_SHA}"/check-runs --paginate | jq --slurp --compact-output --raw-output '[.[].check_runs.[] | select(.conclusion != "skipped") | .name | select(contains("https://") or . == "CodeQL" or . == "Dependabot" or . == "check-expected-release-files" or contains("Update") or contains("ESLint") or contains("update") or contains("test-setup-python-scripts") | not)] | unique | sort')"
+CHECKS="$(gh api repos/github/codeql-action/commits/"${GITHUB_SHA}"/check-runs --paginate | jq --slurp --compact-output --raw-output '[.[].check_runs.[] | select(.conclusion != "skipped") | .name | select(contains("https://") or . == "CodeQL" or . == "Dependabot" or . == "check-expected-release-files" or contains("Update") or contains("ESLint") or contains("update") or contains("test-setup-python-scripts") or . == "Agent" or . == "Cleanup artifacts" or . == "Prepare" or . == "Upload results" | not)] | unique | sort')"
 
 echo "$CHECKS" | jq
 

.github/workflows/update-bundle.yml

@@ -20,7 +20,7 @@ defaults:
 jobs:
   update-bundle:
     if: github.event.release.prerelease && startsWith(github.event.release.tag_name, 'codeql-bundle-')
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     permissions:
       contents: write # needed to push commits
       pull-requests: write # needed to create pull requests
@@ -40,8 +40,13 @@ jobs:
           git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
           git config --global user.name "github-actions[bot]"
 
+      - name: Set up Python
+        uses: actions/setup-python@v6
+        with:
+          python-version: '3.12'
+
       - name: Set up Node.js
-        uses: actions/setup-node@v5
+        uses: actions/setup-node@v6
         with:
           node-version: 24
           cache: 'npm'
@@ -78,28 +83,8 @@ jobs:
           echo "PR_URL=$pr_url" | tee -a "$GITHUB_ENV"
 
       - name: Create changelog note
-        shell: python
         run: |
-          import os
-          import re
-
-          # Get the PR number from the PR URL.
-          pr_number = os.environ['PR_URL'].split('/')[-1]
-          changelog_note = f"- Update default CodeQL bundle version to {os.environ['CLI_VERSION']}. [#{pr_number}]({os.environ['PR_URL']})"
-
-          # If the "[UNRELEASED]" section starts with "no user facing changes", remove that line.
-          # Use perl to avoid having to escape the newline character.
-
-          with open('CHANGELOG.md', 'r') as f:
-              changelog = f.read()
-
-          changelog = changelog.replace('## [UNRELEASED]\n\nNo user facing changes.', '## [UNRELEASED]\n')
-
-          # Add the changelog note to the bottom of the "[UNRELEASED]" section.
-          changelog = re.sub(r'\n## (\d+\.\d+\.\d+)', f'{changelog_note}\n\n## \\1', changelog, count=1)
-
-          with open('CHANGELOG.md', 'w') as f:
-              f.write(changelog)
+          python .github/workflows/script/bundle_changelog.py
 
       - name: Push changelog note
         run: |

.github/workflows/update-release-branch.yml

@@ -26,7 +26,7 @@ jobs:
 
   update:
     timeout-minutes: 45
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     if: github.event_name == 'workflow_dispatch'
     needs: [prepare]
     env:
@@ -77,7 +77,7 @@ jobs:
 
   backport:
     timeout-minutes: 45
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     environment: Automation
     needs: [prepare]
     if: ${{ (github.event_name == 'push') && needs.prepare.outputs.backport_target_branches != '[]' }}

.github/workflows/update-supported-enterprise-server-versions.yml

@@ -4,12 +4,18 @@ on:
   schedule:
     - cron: "0 0 * * *"
   workflow_dispatch:
+  pull_request:
+    branches:
+      - main
+    paths:
+      - .github/workflows/update-supported-enterprise-server-versions.yml
+      - .github/workflows/update-supported-enterprise-server-versions/update.py
 
 jobs:
   update-supported-enterprise-server-versions:
     name: Update Supported Enterprise Server Versions
     timeout-minutes: 45
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     if: github.repository == 'github/codeql-action'
     permissions:
       contents: write # needed to push commits
@@ -28,6 +34,7 @@ jobs:
           repository: github/enterprise-releases
           token: ${{ secrets.ENTERPRISE_RELEASE_TOKEN }}
           path: ${{ github.workspace }}/enterprise-releases/
+          sparse-checkout: releases.json
       - name: Update Supported Enterprise Server Versions
         run: |
           cd ./.github/workflows/update-supported-enterprise-server-versions/
@@ -35,6 +42,7 @@ jobs:
           pipenv install
           pipenv run ./update.py
           rm --recursive "$ENTERPRISE_RELEASES_PATH"
+          npm ci
           npm run build
         env:
           ENTERPRISE_RELEASES_PATH: ${{ github.workspace }}/enterprise-releases/
@@ -44,25 +52,33 @@ jobs:
           git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
           git config --global user.name "github-actions[bot]"
 
-      - name: Commit changes and open PR
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      - name: Commit changes
+        id: prepare-commit
         run: |
           if [[ -z $(git status --porcelain) ]]; then
             echo "No changes to commit"
+            echo "committed=false" >> $GITHUB_OUTPUT
           else
             git checkout -b update-supported-enterprise-server-versions
             git add .
             git commit --message "Update supported GitHub Enterprise Server versions"
-            git push origin update-supported-enterprise-server-versions
 
-            body="This PR updates the list of supported GitHub Enterprise Server versions, either because a new "
-            body+="version is about to be feature frozen, or because an old release has been deprecated."
-            body+=$'\n\n'
-            body+="If an old release has been deprecated, please follow the instructions in CONTRIBUTING.md to "
-            body+="deprecate the corresponding version of CodeQL."
-
-            gh pr create --draft \
-              --title "Update supported GitHub Enterprise Server versions" \
-              --body "$body"
+            echo "committed=true" >> $GITHUB_OUTPUT
           fi
+
+      - name: Open PR
+        if: github.event_name != 'pull_request' && steps.prepare-commit.outputs.committed == 'true'
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          git push origin update-supported-enterprise-server-versions
+
+          body="This PR updates the list of supported GitHub Enterprise Server versions, either because a new "
+          body+="version is about to be feature frozen, or because an old release has been deprecated."
+          body+=$'\n\n'
+          body+="If an old release has been deprecated, please follow the instructions in CONTRIBUTING.md to "
+          body+="deprecate the corresponding version of CodeQL."
+
+          gh pr create --draft \
+            --title "Update supported GitHub Enterprise Server versions" \
+            --body "$body"

CHANGELOG.md

@@ -2,10 +2,36 @@
 
 See the [releases page](https://github.com/github/codeql-action/releases) for the relevant changes to the CodeQL CLI and language packs.
 
-## 3.30.7 - 06 Oct 2025
+## [UNRELEASED]
+
+- CodeQL Action v3 will be deprecated in December 2026.  The Action now logs a warning for customers who are running v3 but could be running v4. For more information, see [Upcoming deprecation of CodeQL Action v3](https://github.blog/changelog/2025-10-28-upcoming-deprecation-of-codeql-action-v3/).
+
+## 4.31.2 - 30 Oct 2025
 
 No user facing changes.
 
+## 4.31.1 - 30 Oct 2025
+
+- The `add-snippets` input has been removed from the `analyze` action. This input has been deprecated since CodeQL Action 3.26.4 in August 2024 when this removal was announced.
+
+## 4.31.0 - 24 Oct 2025
+
+- Bump minimum CodeQL bundle version to 2.17.6. [#3223](https://github.com/github/codeql-action/pull/3223)
+- When SARIF files are uploaded by the `analyze` or `upload-sarif` actions, the CodeQL Action automatically performs post-processing steps to prepare the data for the upload. Previously, these post-processing steps were only performed before an upload took place. We are now changing this so that the post-processing steps will always be performed, even when the SARIF files are not uploaded. This does not change anything for the `upload-sarif` action. For `analyze`, this may affect Advanced Setup for CodeQL users who specify a value other than `always` for the `upload` input. [#3222](https://github.com/github/codeql-action/pull/3222)
+
+## 4.30.9 - 17 Oct 2025
+
+- Update default CodeQL bundle version to 2.23.3. [#3205](https://github.com/github/codeql-action/pull/3205)
+- Experimental: A new `setup-codeql` action has been added which is similar to `init`, except it only installs the CodeQL CLI and does not initialize a database. Do not use this in production as it is part of an internal experiment and subject to change at any time. [#3204](https://github.com/github/codeql-action/pull/3204)
+
+## 4.30.8 - 10 Oct 2025
+
+No user facing changes.
+
+## 4.30.7 - 06 Oct 2025
+
+- [v4+ only] The CodeQL Action now runs on Node.js v24. [#3169](https://github.com/github/codeql-action/pull/3169)
+
 ## 3.30.6 - 02 Oct 2025
 
 - Update default CodeQL bundle version to 2.23.2. [#3168](https://github.com/github/codeql-action/pull/3168)
@@ -240,13 +266,17 @@ No user facing changes.
 ## 3.26.12 - 07 Oct 2024
 
 - _Upcoming breaking change_: Add a deprecation warning for customers using CodeQL version 2.14.5 and earlier. These versions of CodeQL were discontinued on 24 September 2024 alongside GitHub Enterprise Server 3.10, and will be unsupported by CodeQL Action versions 3.27.0 and later and versions 2.27.0 and later. [#2520](https://github.com/github/codeql-action/pull/2520)
+
   - If you are using one of these versions, please update to CodeQL CLI version 2.14.6 or later. For instance, if you have specified a custom version of the CLI using the 'tools' input to the 'init' Action, you can remove this input to use the default version.
+
   - Alternatively, if you want to continue using a version of the CodeQL CLI between 2.13.5 and 2.14.5, you can replace `github/codeql-action/*@v3` by `github/codeql-action/*@v3.26.11` and `github/codeql-action/*@v2` by `github/codeql-action/*@v2.26.11` in your code scanning workflow to ensure you continue using this version of the CodeQL Action.
 
 ## 3.26.11 - 03 Oct 2024
 
 - _Upcoming breaking change_: Add support for using `actions/download-artifact@v4` to programmatically consume CodeQL Action debug artifacts.
+
   Starting November 30, 2024, GitHub.com customers will [no longer be able to use `actions/download-artifact@v3`](https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/). Therefore, to avoid breakage, customers who programmatically download the CodeQL Action debug artifacts should set the `CODEQL_ACTION_ARTIFACT_V4_UPGRADE` environment variable to `true` and bump `actions/download-artifact@v3` to `actions/download-artifact@v4` in their workflows. The CodeQL Action will enable this behavior by default in early November and workflows that have not yet bumped `actions/download-artifact@v3` to `actions/download-artifact@v4` will begin failing then.
+
   This change is currently unavailable for GitHub Enterprise Server customers, as `actions/upload-artifact@v4` and `actions/download-artifact@v4` are not yet compatible with GHES.
 - Update default CodeQL bundle version to 2.19.1. [#2519](https://github.com/github/codeql-action/pull/2519)
 
@@ -369,9 +399,12 @@ No user facing changes.
 ## 3.25.0 - 15 Apr 2024
 
 - The deprecated feature for extracting dependencies for a Python analysis has been removed. [#2224](https://github.com/github/codeql-action/pull/2224)
+
   As a result, the following inputs and environment variables are now ignored:
+
   - The `setup-python-dependencies` input to the `init` Action
   - The `CODEQL_ACTION_DISABLE_PYTHON_DEPENDENCY_INSTALLATION` environment variable
+
   We recommend removing any references to these from your workflows. For more information, see the release notes for CodeQL Action v3.23.0 and v2.23.0.
 - Automatically overwrite an existing database if found on the filesystem. [#2229](https://github.com/github/codeql-action/pull/2229)
 - Bump the minimum CodeQL bundle version to 2.12.6. [#2232](https://github.com/github/codeql-action/pull/2232)

README.md

@@ -34,6 +34,7 @@ Actions with special purposes and unlikely to be used directly:
 - `autobuild`: Attempts to automatically build the code. Only used for analyzing languages that require a build. Use the `build-mode: autobuild` input in the `init` action instead. For information about input parameters, see the [autobuild action definition](https://github.com/github/codeql-action/blob/main/autobuild/action.yml).
 - `resolve-environment`: [Experimental] Attempts to infer a build environment suitable for automatic builds. For information about input parameters, see the [resolve-environment action definition](https://github.com/github/codeql-action/blob/main/resolve-environment/action.yml).
 - `start-proxy`: [Experimental] Start the HTTP proxy server. Internal use only and will change without notice. For information about input parameters, see the [start-proxy action definition](https://github.com/github/codeql-action/blob/main/start-proxy/action.yml).
+- `setup-codeql`: [Experimental] Similar to `init`, except it only installs the CodeQL CLI and does not initialize a database.
 
 ### Workflow Permissions
 

analyze/action.yml

@@ -6,7 +6,7 @@ inputs:
     description: The name of the check run to add text to.
     required: false
   output:
-    description: The path of the directory in which to save the SARIF results
+    description: The path of the directory in which to save the SARIF results from the CodeQL CLI.
     required: false
     default: "../results"
   upload:
@@ -32,14 +32,10 @@ inputs:
       and 13GB for macOS).
     required: false
   add-snippets:
-    description: Specify whether or not to add code snippets to the output sarif file.
+    description: Does not have any effect.
     required: false
-    default: "false"
     deprecationMessage: >-
-      The input "add-snippets" is deprecated and will be removed on the first release in August 2025.
-      When this input is set to true it is expected to add code snippets with an alert to the SARIF file.
-      However, since Code Scanning ignores code snippets provided as part of a SARIF file this is currently
-      a no operation. No alternative is available.
+      The input "add-snippets" has been removed and no longer has any effect.
   skip-queries:
     description: If this option is set, the CodeQL database will be built but no queries will be run on it. Thus, no results will be produced.
     required: false
@@ -70,6 +66,12 @@ inputs:
     description: Whether to upload the resulting CodeQL database
     required: false
     default: "true"
+  post-processed-sarif-path:
+    description: >-
+      Before uploading the SARIF files produced by the CodeQL CLI, the CodeQL Action may perform some post-processing
+      on them. Ordinarily, these post-processed SARIF files are not saved to disk. However, if a path is provided as an
+      argument for this input, they are written to the specified directory.
+    required: false
   wait-for-processing:
     description: If true, the Action will wait for the uploaded SARIF to be processed before completing.
     required: true
@@ -92,6 +94,6 @@ outputs:
   sarif-id:
     description: The ID of the uploaded SARIF file.
 runs:
-  using: node20
+  using: node24
   main: "../lib/analyze-action.js"
   post: "../lib/analyze-action-post.js"

autobuild/action.yml

@@ -15,5 +15,5 @@ inputs:
       $GITHUB_WORKSPACE as its working directory.
     required: false
 runs:
-  using: node20
+  using: node24
   main: '../lib/autobuild-action.js'

eslint.config.mjs

@@ -12,6 +12,7 @@ import filenames from "eslint-plugin-filenames";
 import github from "eslint-plugin-github";
 import _import from "eslint-plugin-import";
 import noAsyncForeach from "eslint-plugin-no-async-foreach";
+import jsdoc from "eslint-plugin-jsdoc";
 import globals from "globals";
 
 const __filename = fileURLToPath(import.meta.url);
@@ -52,6 +53,7 @@ export default [
       github: fixupPluginRules(github),
       import: fixupPluginRules(_import),
       "no-async-foreach": noAsyncForeach,
+      "jsdoc": jsdoc,
     },
 
     languageOptions: {
@@ -131,7 +133,18 @@ export default [
       "no-sequences": "error",
       "no-shadow": "off",
       "@typescript-eslint/no-shadow": "error",
+      "@typescript-eslint/prefer-optional-chain": "error",
       "one-var": ["error", "never"],
+
+      // Check param names to ensure that we don't have outdated JSDocs.
+      "jsdoc/check-param-names": [
+        "error",
+        {
+          // We don't currently require full JSDoc coverage, so this rule
+          // should not error on missing @param annotations.
+          disableMissingParamChecks: true,
+        }
+      ],
     },
   },
   {

init/action.yml

@@ -165,6 +165,6 @@ outputs:
   codeql-version:
     description: The version of the CodeQL binary used for analysis
 runs:
-  using: node20
+  using: node24
   main: '../lib/init-action.js'
   post: '../lib/init-action-post.js'

lib/defaults.json

@@ -1,6 +1,6 @@
 {
-  "bundleVersion": "codeql-bundle-v2.23.2",
-  "cliVersion": "2.23.2",
-  "priorBundleVersion": "codeql-bundle-v2.23.1",
-  "priorCliVersion": "2.23.1"
+  "bundleVersion": "codeql-bundle-v2.23.3",
+  "cliVersion": "2.23.3",
+  "priorBundleVersion": "codeql-bundle-v2.23.2",
+  "priorCliVersion": "2.23.2"
 }

package.json

@@ -1,6 +1,6 @@
 {
   "name": "codeql",
-  "version": "3.30.7",
+  "version": "4.31.3",
   "private": true,
   "description": "CodeQL action",
   "scripts": {
@@ -24,22 +24,20 @@
   },
   "license": "MIT",
   "dependencies": {
-    "@actions/artifact": "^2.3.1",
+    "@actions/artifact": "^4.0.0",
     "@actions/artifact-legacy": "npm:@actions/artifact@^1.1.2",
     "@actions/cache": "^4.1.0",
     "@actions/core": "^1.11.1",
     "@actions/exec": "^1.1.1",
     "@actions/github": "^6.0.0",
     "@actions/glob": "^0.5.0",
-    "@actions/http-client": "^2.2.3",
-    "@actions/io": "^1.1.3",
+    "@actions/http-client": "^3.0.0",
+    "@actions/io": "^2.0.0",
     "@actions/tool-cache": "^2.0.2",
     "@octokit/plugin-retry": "^6.0.0",
+    "@octokit/request-error": "^7.0.2",
     "@schemastore/package": "0.0.10",
     "archiver": "^7.0.1",
-    "check-disk-space": "^3.4.0",
-    "console-log-level": "^1.4.1",
-    "del": "^8.0.0",
     "fast-deep-equal": "^3.1.3",
     "follow-redirects": "^1.15.11",
     "get-folder-size": "^5.0.0",
@@ -47,39 +45,39 @@
     "jsonschema": "1.4.1",
     "long": "^5.3.2",
     "node-forge": "^1.3.1",
-    "octokit": "^5.0.3",
-    "semver": "^7.7.2",
+    "octokit": "^5.0.5",
+    "semver": "^7.7.3",
     "uuid": "^13.0.0"
   },
   "devDependencies": {
     "@ava/typescript": "6.0.0",
-    "@eslint/compat": "^1.4.0",
+    "@eslint/compat": "^1.4.1",
     "@eslint/eslintrc": "^3.3.1",
-    "@eslint/js": "^9.36.0",
+    "@eslint/js": "^9.39.1",
     "@microsoft/eslint-formatter-sarif": "^3.1.0",
-    "@octokit/types": "^15.0.0",
-    "@types/archiver": "^6.0.3",
-    "@types/console-log-level": "^1.4.5",
+    "@octokit/types": "^16.0.0",
+    "@types/archiver": "^7.0.0",
     "@types/follow-redirects": "^1.14.4",
     "@types/js-yaml": "^4.0.9",
     "@types/node": "20.19.9",
     "@types/node-forge": "^1.3.14",
     "@types/semver": "^7.7.1",
     "@types/sinon": "^17.0.4",
-    "@typescript-eslint/eslint-plugin": "^8.44.1",
+    "@typescript-eslint/eslint-plugin": "^8.46.4",
     "@typescript-eslint/parser": "^8.41.0",
     "ava": "^6.4.1",
-    "esbuild": "^0.25.10",
+    "esbuild": "^0.27.0",
     "eslint": "^8.57.1",
     "eslint-import-resolver-typescript": "^3.8.7",
     "eslint-plugin-filenames": "^1.3.2",
     "eslint-plugin-github": "^5.1.8",
     "eslint-plugin-import": "2.29.1",
+    "eslint-plugin-jsdoc": "^61.1.12",
     "eslint-plugin-no-async-foreach": "^0.1.1",
     "glob": "^11.0.3",
     "nock": "^14.0.10",
     "sinon": "^21.0.0",
-    "typescript": "^5.9.2"
+    "typescript": "^5.9.3"
   },
   "overrides": {
     "@actions/tool-cache": {

pr-checks/checks/analyze-ref-input.yml

@@ -2,6 +2,7 @@ name: "Analyze: 'ref' and 'sha' from inputs"
 description: "Checks that specifying 'ref' and 'sha' as inputs works"
 versions: ["default"]
 installGo: true
+installPython: true
 steps:
   - uses: ./../action/init
     with:

pr-checks/checks/bundle-from-toolcache.yml

@@ -0,0 +1,31 @@
+name: "Bundle: From toolcache"
+description: "The CodeQL bundle should be cached within the toolcache"
+versions:
+  - toolcache
+steps:
+  - name: Install @actions/tool-cache
+    run: npm install @actions/tool-cache
+  - name: Check toolcache contains CodeQL
+    continue-on-error: true
+    uses: actions/github-script@v8
+    with:
+      script: |
+        const toolcache = require('@actions/tool-cache');
+        const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+        if (allCodeqlVersions.length === 0) {
+          throw new Error(`CodeQL could not be found in the toolcache`);
+        }
+  - id: setup-codeql
+    uses: ./../action/setup-codeql
+    with:
+      tools: ${{ steps.prepare-test.outputs.tools-url }}
+  - name: Check CodeQL is installed within the toolcache
+    uses: actions/github-script@v8
+    with:
+      script: |
+        const toolcache = require('@actions/tool-cache');
+        const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+        console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+        if (allCodeqlVersions.length === 0) {
+          throw new Error('CodeQL not found in toolcache');
+        }

pr-checks/checks/bundle-zstd.yml

@@ -27,7 +27,7 @@ steps:
       output: ${{ runner.temp }}/results
       upload-database: false
   - name: Upload SARIF
-    uses: actions/upload-artifact@v4
+    uses: actions/upload-artifact@v5
     with:
       name: ${{ matrix.os }}-zstd-bundle.sarif
       path: ${{ runner.temp }}/results/javascript.sarif

pr-checks/checks/config-export.yml

@@ -12,7 +12,7 @@ steps:
       output: "${{ runner.temp }}/results"
       upload-database: false
   - name: Upload SARIF
-    uses: actions/upload-artifact@v4
+    uses: actions/upload-artifact@v5
     with:
       name: config-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
       path: "${{ runner.temp }}/results/javascript.sarif"

pr-checks/checks/diagnostics-export.yml

@@ -25,7 +25,7 @@ steps:
       output: "${{ runner.temp }}/results"
       upload-database: false
   - name: Upload SARIF
-    uses: actions/upload-artifact@v4
+    uses: actions/upload-artifact@v5
     with:
       name: diagnostics-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
       path: "${{ runner.temp }}/results/javascript.sarif"

pr-checks/checks/export-file-baseline-information.yml

@@ -17,7 +17,7 @@ steps:
     with:
       output: "${{ runner.temp }}/results"
   - name: Upload SARIF
-    uses: actions/upload-artifact@v4
+    uses: actions/upload-artifact@v5
     with:
       name: with-baseline-information-${{ matrix.os }}-${{ matrix.version }}.sarif.json
       path: "${{ runner.temp }}/results/javascript.sarif"

pr-checks/checks/job-run-uuid-sarif.yml

@@ -11,7 +11,7 @@ steps:
     with:
       output: "${{ runner.temp }}/results"
   - name: Upload SARIF
-    uses: actions/upload-artifact@v4
+    uses: actions/upload-artifact@v5
     with:
       name: ${{ matrix.os }}-${{ matrix.version }}.sarif.json
       path: "${{ runner.temp }}/results/javascript.sarif"

pr-checks/checks/local-bundle.yml

@@ -2,6 +2,7 @@ name: "Local CodeQL bundle"
 description: "Tests using a CodeQL bundle from a local file rather than a URL"
 versions: ["linked"]
 installGo: true
+installPython: true
 steps:
   - name: Fetch latest CodeQL bundle
     run: |

pr-checks/checks/multi-language-autodetect.yml

@@ -4,6 +4,7 @@ operatingSystems: ["macos", "ubuntu"]
 env:
   CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI: true
 installGo: true
+installPython: true
 steps:
   - name: Use Xcode 16
     if: runner.os == 'macOS' && matrix.version != 'nightly-latest'

pr-checks/checks/packaging-codescanning-config-inputs-js.yml

@@ -3,6 +3,7 @@ description: "Checks that specifying packages using a combination of a config fi
 versions: ["linked", "default", "nightly-latest"] # This feature is not compatible with old CLIs
 installGo: true
 installNode: true
+installPython: true
 steps:
   - uses: ./../action/init
     with:

pr-checks/checks/quality-queries.yml

@@ -36,9 +36,10 @@ steps:
     with:
       output: "${{ runner.temp }}/results"
       upload-database: false
+      post-processed-sarif-path: "${{ runner.temp }}/post-processed"
   - name: Upload security SARIF
     if: contains(matrix.analysis-kinds, 'code-scanning')
-    uses: actions/upload-artifact@v4
+    uses: actions/upload-artifact@v5
     with:
       name: |
         quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.sarif.json
@@ -46,12 +47,20 @@ steps:
       retention-days: 7
   - name: Upload quality SARIF
     if: contains(matrix.analysis-kinds, 'code-quality')
-    uses: actions/upload-artifact@v4
+    uses: actions/upload-artifact@v5
     with:
       name: |
         quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.quality.sarif.json
       path: "${{ runner.temp }}/results/javascript.quality.sarif"
       retention-days: 7
+  - name: Upload post-processed SARIF
+    uses: actions/upload-artifact@v5
+    with:
+      name: |
+        post-processed-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.sarif.json
+      path: "${{ runner.temp }}/post-processed"
+      retention-days: 7
+      if-no-files-found: error
   - name: Check quality query does not appear in security SARIF
     if: contains(matrix.analysis-kinds, 'code-scanning')
     uses: actions/github-script@v8

pr-checks/checks/remote-config.yml

@@ -6,6 +6,7 @@ versions:
   - linked
   - nightly-latest
 installGo: true
+installPython: true
 steps:
   - uses: ./../action/init
     with:

pr-checks/checks/rubocop-multi-language.yml

@@ -4,7 +4,7 @@ description: "Tests using RuboCop to analyze a multi-language repository and the
 versions: ["default"]
 steps:
   - name: Set up Ruby
-    uses: ruby/setup-ruby@0481980f17b760ef6bca5e8c55809102a0af1e5a # v1.263.0
+    uses: ruby/setup-ruby@d5126b9b3579e429dd52e51e68624dda2e05be25 # v1.267.0
     with:
       ruby-version: 2.6
   - name: Install Code Scanning integration

pr-checks/checks/unset-environment.yml

@@ -6,6 +6,7 @@ versions:
   - linked
   - nightly-latest
 installGo: true
+installPython: true
 steps:
   - uses: ./../action/init
     id: init

pr-checks/checks/upload-quality-sarif.yml

@@ -1,26 +0,0 @@
-name: "Upload-sarif: code quality endpoint"
-description: "Checks that uploading SARIFs to the code quality endpoint works"
-versions: ["default"]
-installGo: true
-steps:
-  - uses: ./../action/init
-    with:
-      tools: ${{ steps.prepare-test.outputs.tools-url }}
-      languages: csharp,java,javascript,python
-      analysis-kinds: code-quality
-  - name: Build code
-    run: ./build.sh
-  # Generate some SARIF we can upload with the upload-sarif step
-  - uses: ./../action/analyze
-    with:
-      ref: 'refs/heads/main'
-      sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
-      upload: never
-  - uses: ./../action/upload-sarif
-    id: upload-sarif
-    with:
-      ref: 'refs/heads/main'
-      sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
-  - name: "Check output from `upload-sarif` step"
-    if: '!(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-quality)'
-    run: exit 1

pr-checks/checks/upload-ref-sha-input.yml

@@ -2,6 +2,7 @@ name: "Upload-sarif: 'ref' and 'sha' from inputs"
 description: "Checks that specifying 'ref' and 'sha' as inputs works"
 versions: ["default"]
 installGo: true
+installPython: true
 steps:
   - uses: ./../action/init
     with:

pr-checks/checks/upload-sarif.yml

@@ -0,0 +1,82 @@
+name: "Test different uses of `upload-sarif`"
+description: "Checks that uploading SARIFs to the code quality endpoint works"
+versions: ["default"]
+analysisKinds: ["code-scanning", "code-quality", "code-scanning,code-quality"]
+installGo: true
+installPython: true
+steps:
+  - uses: ./../action/init
+    with:
+      tools: ${{ steps.prepare-test.outputs.tools-url }}
+      languages: csharp,java,javascript,python
+      analysis-kinds: ${{ matrix.analysis-kinds }}
+  - name: Build code
+    run: ./build.sh
+  # Generate some SARIF we can upload with the upload-sarif step
+  - uses: ./../action/analyze
+    with:
+      ref: 'refs/heads/main'
+      sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+      upload: never
+      output: ${{ runner.temp }}/results
+
+  - name: |
+      Upload all SARIF files for `analysis-kinds: ${{ matrix.analysis-kinds }}`
+    uses: ./../action/upload-sarif
+    id: upload-sarif
+    with:
+      ref: 'refs/heads/main'
+      sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+      sarif_file: ${{ runner.temp }}/results
+      category: |
+        ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:all-files/
+  - name: "Fail for missing output from `upload-sarif` step for `code-scanning`"
+    if: "contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-scanning)"
+    run: exit 1
+  - name: "Fail for missing output from `upload-sarif` step for `code-quality`"
+    if: "contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-quality)"
+    run: exit 1
+
+  - name: Upload single SARIF file for Code Scanning
+    uses: ./../action/upload-sarif
+    id: upload-single-sarif-code-scanning
+    if: "contains(matrix.analysis-kinds, 'code-scanning')"
+    with:
+      ref: 'refs/heads/main'
+      sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+      sarif_file: ${{ runner.temp }}/results/javascript.sarif
+      category: |
+        ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-scanning/
+  - name: "Fail for missing output from `upload-single-sarif-code-scanning` step"
+    if: "contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-sarif-code-scanning.outputs.sarif-ids).code-scanning)"
+    run: exit 1
+  - name: Upload single SARIF file for Code Quality
+    uses: ./../action/upload-sarif
+    id: upload-single-sarif-code-quality
+    if: "contains(matrix.analysis-kinds, 'code-quality')"
+    with:
+      ref: 'refs/heads/main'
+      sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+      sarif_file: ${{ runner.temp }}/results/javascript.quality.sarif
+      category: |
+        ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-quality/
+  - name: "Fail for missing output from `upload-single-sarif-code-quality` step"
+    if: "contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-single-sarif-code-quality.outputs.sarif-ids).code-quality)"
+    run: exit 1
+
+  - name: Change SARIF file extension
+    if: "contains(matrix.analysis-kinds, 'code-scanning')"
+    run: mv ${{ runner.temp }}/results/javascript.sarif ${{ runner.temp }}/results/javascript.sarif.json
+  - name: Upload single non-`.sarif` file
+    uses: ./../action/upload-sarif
+    id: upload-single-non-sarif
+    if: "contains(matrix.analysis-kinds, 'code-scanning')"
+    with:
+      ref: 'refs/heads/main'
+      sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+      sarif_file: ${{ runner.temp }}/results/javascript.sarif.json
+      category: |
+        ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:non-sarif/
+  - name: "Fail for missing output from `upload-single-non-sarif` step"
+    if: "contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-non-sarif.outputs.sarif-ids).code-scanning)"
+    run: exit 1

pr-checks/checks/with-checkout-path.yml

@@ -2,6 +2,7 @@ name: "Use a custom `checkout_path`"
 description: "Checks that a custom `checkout_path` will find the proper commit_oid"
 versions: ["linked"]
 installGo: true
+installPython: true
 steps:
   # This ensures we don't accidentally use the original checkout for any part of the test.
   - name: Delete original checkout
@@ -37,28 +38,29 @@ steps:
 
   - name: Verify SARIF after upload
     run: |
+      PAYLOAD_FILE="$RUNNER_TEMP/payload-code-scanning.json"
       EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
       EXPECTED_REF="v1.1.0"
       EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
 
-      ACTUAL_COMMIT_OID="$(cat "$RUNNER_TEMP/payload.json" | jq -r .commit_oid)"
-      ACTUAL_REF="$(cat "$RUNNER_TEMP/payload.json" | jq -r .ref)"
-      ACTUAL_CHECKOUT_URI="$(cat "$RUNNER_TEMP/payload.json" | jq -r .checkout_uri)"
+      ACTUAL_COMMIT_OID="$(cat "$PAYLOAD_FILE" | jq -r .commit_oid)"
+      ACTUAL_REF="$(cat "$PAYLOAD_FILE" | jq -r .ref)"
+      ACTUAL_CHECKOUT_URI="$(cat "$PAYLOAD_FILE" | jq -r .checkout_uri)"
 
       if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
         echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
-        echo "$RUNNER_TEMP/payload.json"
+        echo "$PAYLOAD_FILE"
         exit 1
       fi
 
       if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
         echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
-        echo "$RUNNER_TEMP/payload.json"
+        echo "$PAYLOAD_FILE"
         exit 1
       fi
 
       if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
         echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
-        echo "$RUNNER_TEMP/payload.json"
+        echo "$PAYLOAD_FILE"
         exit 1
       fi

pr-checks/sync.py

@@ -117,7 +117,7 @@ for file in sorted((this_dir / 'checks').glob('*.yml')):
         steps.extend([
             {
                 'name': 'Install Node.js',
-                'uses': 'actions/setup-node@v5',
+                'uses': 'actions/setup-node@v6',
                 'with': {
                     'node-version': '20.x',
                     'cache': 'npm',
@@ -184,6 +184,26 @@ for file in sorted((this_dir / 'checks').glob('*.yml')):
             }
         })
 
+    installPython = is_truthy(checkSpecification.get('installPython', ''))
+
+    if installPython:
+        basePythonVersionExpr = '3.13'
+        workflowInputs['python-version'] = {
+            'type': 'string',
+            'description': 'The version of Python to install',
+            'required': False,
+            'default': basePythonVersionExpr,
+        }
+
+        steps.append({
+            'name': 'Install Python',
+            'if': 'matrix.version != \'nightly-latest\'',
+            'uses': 'actions/setup-python@v6',
+            'with': {
+                'python-version': '${{ inputs.python-version || \'' + basePythonVersionExpr + '\' }}'
+            }
+        })
+
     # If container initialisation steps are present in the check specification,
     # make sure to execute them first.
     if 'container' in checkSpecification and 'container-init-steps' in checkSpecification:

resolve-environment/action.yml

@@ -21,5 +21,5 @@ outputs:
   environment:
     description: The inferred build environment configuration.
 runs:
-  using: node20
+  using: node24
   main: '../lib/resolve-environment-action.js'

scripts/check-node-modules.sh

@@ -9,9 +9,15 @@ if [ "$GITHUB_ACTIONS" = "true" ]; then
 fi
 
 # Check if npm install is likely needed before proceeding
-if [ ! -d node_modules ] || [ package-lock.json -nt node_modules/.package-lock.json ]; then
-  echo "Running 'npm install' because 'node_modules/.package-lock.json' appears to be outdated..."
+if [ ! -d node_modules ]; then
+  echo "Running 'npm install' because 'node_modules' directory is missing."
+  npm install
+elif [ package.json -nt package-lock.json ]; then
+  echo "Running 'npm install' because 'package-lock.json' appears to be outdated."
+  npm install
+elif [ package-lock.json -nt node_modules/.package-lock.json ]; then
+  echo "Running 'npm install' because 'node_modules/.package-lock.json' appears to be outdated."
   npm install
 else
-  echo "Skipping 'npm install' because 'node_modules/.package-lock.json' appears to be up-to-date."
+  echo "Skipping 'npm install' because everything appears to be up-to-date."
 fi

setup-codeql/action.yml

@@ -0,0 +1,39 @@
+name: 'CodeQL: Setup'
+description: 'Installs the CodeQL CLI'
+author: 'GitHub'
+inputs:
+  tools:
+    description: >-
+      By default, the Action will use the recommended version of the CodeQL
+      Bundle to analyze your project. You can override this choice using this
+      input. One of:
+
+      - A local path to a CodeQL Bundle tarball, or
+      - The URL of a CodeQL Bundle tarball GitHub release asset, or
+      - A special value `linked` which uses the version of the CodeQL tools
+        that the Action has been bundled with.
+      - A special value `nightly` which uses the latest nightly version of the
+        CodeQL tools. Note that this is unstable and not recommended for
+        production use.
+
+      If not specified, the Action will check in several places until it finds
+      the CodeQL tools.
+    required: false
+  token:
+    description: GitHub token to use for authenticating with this instance of GitHub.
+    default: ${{ github.token }}
+    required: false
+  matrix:
+    default: ${{ toJson(matrix) }}
+    required: false
+  external-repository-token:
+    description: A token for fetching additional files from private repositories in the same GitHub instance that is running this action.
+    required: false
+outputs:
+  codeql-path:
+    description: The path of the CodeQL binary that was installed.
+  codeql-version:
+    description: The version of the CodeQL binary that was installed.
+runs:
+  using: node24
+  main: '../lib/setup-codeql-action.js'

src/actions-util.ts

@@ -247,9 +247,14 @@ export function isSelfHostedRunner() {
   return process.env.RUNNER_ENVIRONMENT === "self-hosted";
 }
 
+/** Determines whether the workflow trigger is `dynamic`. */
+export function isDynamicWorkflow(): boolean {
+  return getWorkflowEventName() === "dynamic";
+}
+
 /** Determines whether we are running in default setup. */
 export function isDefaultSetup(): boolean {
-  return getWorkflowEventName() === "dynamic";
+  return isDynamicWorkflow();
 }
 
 export function prettyPrintInvocation(cmd: string, args: string[]): string {

src/analyses.test.ts

@@ -1,12 +1,19 @@
 import test from "ava";
+import * as sinon from "sinon";
 
+import * as actionsUtil from "./actions-util";
 import {
   AnalysisKind,
+  getAnalysisKinds,
   parseAnalysisKinds,
   supportedAnalysisKinds,
 } from "./analyses";
+import { getRunnerLogger } from "./logging";
+import { setupTests } from "./testing-utils";
 import { ConfigurationError } from "./util";
 
+setupTests(test);
+
 test("All known analysis kinds can be parsed successfully", async (t) => {
   for (const analysisKind of supportedAnalysisKinds) {
     t.deepEqual(await parseAnalysisKinds(analysisKind), [analysisKind]);
@@ -34,3 +41,29 @@ test("Parsing analysis kinds requires at least one analysis kind", async (t) =>
     instanceOf: ConfigurationError,
   });
 });
+
+test("getAnalysisKinds - returns expected analysis kinds for `analysis-kinds` input", async (t) => {
+  const requiredInputStub = sinon.stub(actionsUtil, "getRequiredInput");
+  requiredInputStub
+    .withArgs("analysis-kinds")
+    .returns("code-scanning,code-quality");
+  const result = await getAnalysisKinds(getRunnerLogger(true), true);
+  t.assert(result.includes(AnalysisKind.CodeScanning));
+  t.assert(result.includes(AnalysisKind.CodeQuality));
+});
+
+test("getAnalysisKinds - includes `code-quality` when deprecated `quality-queries` input is used", async (t) => {
+  const requiredInputStub = sinon.stub(actionsUtil, "getRequiredInput");
+  requiredInputStub.withArgs("analysis-kinds").returns("code-scanning");
+  const optionalInputStub = sinon.stub(actionsUtil, "getOptionalInput");
+  optionalInputStub.withArgs("quality-queries").returns("code-quality");
+  const result = await getAnalysisKinds(getRunnerLogger(true), true);
+  t.assert(result.includes(AnalysisKind.CodeScanning));
+  t.assert(result.includes(AnalysisKind.CodeQuality));
+});
+
+test("getAnalysisKinds - throws if `analysis-kinds` input is invalid", async (t) => {
+  const requiredInputStub = sinon.stub(actionsUtil, "getRequiredInput");
+  requiredInputStub.withArgs("analysis-kinds").returns("no-such-thing");
+  await t.throwsAsync(getAnalysisKinds(getRunnerLogger(true), true));
+});

src/analyses.ts

@@ -1,4 +1,8 @@
-import { fixCodeQualityCategory } from "./actions-util";
+import {
+  fixCodeQualityCategory,
+  getOptionalInput,
+  getRequiredInput,
+} from "./actions-util";
 import { Logger } from "./logging";
 import { ConfigurationError } from "./util";
 
@@ -41,6 +45,55 @@ export async function parseAnalysisKinds(
   );
 }
 
+// Used to avoid re-parsing the input after we have done it once.
+let cachedAnalysisKinds: AnalysisKind[] | undefined;
+
+/**
+ * Initialises the analysis kinds for the analysis based on the `analysis-kinds` input.
+ * This function will also use the deprecated `quality-queries` input as an indicator to enable `code-quality`.
+ * If the `analysis-kinds` input cannot be parsed, a `ConfigurationError` is thrown.
+ *
+ * @param logger The logger to use.
+ * @param skipCache For testing, whether to ignore the cached values (default: false).
+ *
+ * @returns The array of enabled analysis kinds.
+ * @throws A `ConfigurationError` if the `analysis-kinds` input cannot be parsed.
+ */
+export async function getAnalysisKinds(
+  logger: Logger,
+  skipCache: boolean = false,
+): Promise<AnalysisKind[]> {
+  if (!skipCache && cachedAnalysisKinds !== undefined) {
+    return cachedAnalysisKinds;
+  }
+
+  cachedAnalysisKinds = await parseAnalysisKinds(
+    getRequiredInput("analysis-kinds"),
+  );
+
+  // Warn that `quality-queries` is deprecated if there is an argument for it.
+  const qualityQueriesInput = getOptionalInput("quality-queries");
+
+  if (qualityQueriesInput !== undefined) {
+    logger.warning(
+      "The `quality-queries` input is deprecated and will be removed in a future version of the CodeQL Action. " +
+        "Use the `analysis-kinds` input to configure different analysis kinds instead.",
+    );
+  }
+
+  // For backwards compatibility, add Code Quality to the enabled analysis kinds
+  // if an input to `quality-queries` was specified. We should remove this once
+  // `quality-queries` is no longer used.
+  if (
+    !cachedAnalysisKinds.includes(AnalysisKind.CodeQuality) &&
+    qualityQueriesInput !== undefined
+  ) {
+    cachedAnalysisKinds.push(AnalysisKind.CodeQuality);
+  }
+
+  return cachedAnalysisKinds;
+}
+
 /** The queries to use for Code Quality analyses. */
 export const codeQualityQueries: string[] = ["code-quality"];
 

src/analyze-action-env.test.ts

@@ -24,6 +24,9 @@ setupTests(test);
 // but the first test would fail.
 
 test("analyze action with RAM & threads from environment variables", async (t) => {
+  // This test frequently times out on Windows with the default timeout, so we bump
+  // it a bit to 20s.
+  t.timeout(1000 * 20);
   await util.withTmpDir(async (tmpDir) => {
     process.env["GITHUB_SERVER_URL"] = util.GITHUB_DOTCOM_URL;
     process.env["GITHUB_REPOSITORY"] = "github/codeql-action-fake-repository";
@@ -75,7 +78,7 @@ test("analyze action with RAM & threads from environment variables", async (t) =
     t.deepEqual(runFinalizeStub.firstCall.args[1], "--threads=-1");
     t.deepEqual(runFinalizeStub.firstCall.args[2], "--ram=4992");
     t.assert(runQueriesStub.calledOnce);
-    t.deepEqual(runQueriesStub.firstCall.args[3], "--threads=-1");
+    t.deepEqual(runQueriesStub.firstCall.args[2], "--threads=-1");
     t.deepEqual(runQueriesStub.firstCall.args[1], "--ram=4992");
   });
 });

src/analyze-action-input.test.ts

@@ -24,6 +24,7 @@ setupTests(test);
 // but the first test would fail.
 
 test("analyze action with RAM & threads from action inputs", async (t) => {
+  t.timeout(1000 * 20);
   await util.withTmpDir(async (tmpDir) => {
     process.env["GITHUB_SERVER_URL"] = util.GITHUB_DOTCOM_URL;
     process.env["GITHUB_REPOSITORY"] = "github/codeql-action-fake-repository";
@@ -75,7 +76,7 @@ test("analyze action with RAM & threads from action inputs", async (t) => {
     t.deepEqual(runFinalizeStub.firstCall.args[1], "--threads=-1");
     t.deepEqual(runFinalizeStub.firstCall.args[2], "--ram=3012");
     t.assert(runQueriesStub.calledOnce);
-    t.deepEqual(runQueriesStub.firstCall.args[3], "--threads=-1");
+    t.deepEqual(runQueriesStub.firstCall.args[2], "--threads=-1");
     t.deepEqual(runQueriesStub.firstCall.args[1], "--ram=3012");
   });
 });

src/analyze-action.ts

@@ -52,6 +52,7 @@ import {
 } from "./trap-caching";
 import * as uploadLib from "./upload-lib";
 import { UploadResult } from "./upload-lib";
+import { postProcessAndUploadSarif } from "./upload-sarif";
 import * as util from "./util";
 
 interface AnalysisStatusReport
@@ -211,7 +212,9 @@ async function runAutobuildIfLegacyGoWorkflow(config: Config, logger: Logger) {
 
 async function run() {
   const startedAt = new Date();
-  let uploadResult: UploadResult | undefined = undefined;
+  let uploadResults:
+    | Partial<Record<analyses.AnalysisKind, UploadResult>>
+    | undefined = undefined;
   let runStats: QueriesStatusReport | undefined = undefined;
   let config: Config | undefined = undefined;
   let trapCacheCleanupTelemetry: TrapCacheCleanupStatusReport | undefined =
@@ -321,10 +324,16 @@ async function run() {
     );
 
     if (actionsUtil.getRequiredInput("skip-queries") !== "true") {
+      // Warn if the removed `add-snippets` input is used.
+      if (actionsUtil.getOptionalInput("add-snippets") !== undefined) {
+        logger.warning(
+          "The `add-snippets` input has been removed and no longer has any effect.",
+        );
+      }
+
       runStats = await runQueries(
         outputDir,
         memory,
-        util.getAddSnippetsFlag(actionsUtil.getRequiredInput("add-snippets")),
         threads,
         diffRangePackDir,
         actionsUtil.getOptionalInput("category"),
@@ -341,31 +350,67 @@ async function run() {
     }
     core.setOutput("db-locations", dbLocations);
     core.setOutput("sarif-output", path.resolve(outputDir));
-    const uploadInput = actionsUtil.getOptionalInput("upload");
-    if (runStats && actionsUtil.getUploadValue(uploadInput) === "always") {
-      if (isCodeScanningEnabled(config)) {
-        uploadResult = await uploadLib.uploadFiles(
-          outputDir,
-          actionsUtil.getRequiredInput("checkout_path"),
-          actionsUtil.getOptionalInput("category"),
-          features,
+    const uploadKind = actionsUtil.getUploadValue(
+      actionsUtil.getOptionalInput("upload"),
+    );
+    if (runStats) {
+      const checkoutPath = actionsUtil.getRequiredInput("checkout_path");
+      const category = actionsUtil.getOptionalInput("category");
+
+      if (await features.getValue(Feature.AnalyzeUseNewUpload)) {
+        uploadResults = await postProcessAndUploadSarif(
           logger,
-          analyses.CodeScanning,
+          features,
+          uploadKind,
+          checkoutPath,
+          outputDir,
+          category,
+          actionsUtil.getOptionalInput("post-processed-sarif-path"),
         );
-        core.setOutput("sarif-id", uploadResult.sarifID);
+      } else if (uploadKind === "always") {
+        uploadResults = {};
+
+        if (isCodeScanningEnabled(config)) {
+          uploadResults[analyses.AnalysisKind.CodeScanning] =
+            await uploadLib.uploadFiles(
+              outputDir,
+              checkoutPath,
+              category,
+              features,
+              logger,
+              analyses.CodeScanning,
+            );
+        }
+
+        if (isCodeQualityEnabled(config)) {
+          uploadResults[analyses.AnalysisKind.CodeQuality] =
+            await uploadLib.uploadFiles(
+              outputDir,
+              checkoutPath,
+              category,
+              features,
+              logger,
+              analyses.CodeQuality,
+            );
+        }
+      } else {
+        uploadResults = {};
+        logger.info("Not uploading results");
       }
 
-      if (isCodeQualityEnabled(config)) {
-        const analysis = analyses.CodeQuality;
-        const qualityUploadResult = await uploadLib.uploadFiles(
-          outputDir,
-          actionsUtil.getRequiredInput("checkout_path"),
-          actionsUtil.getOptionalInput("category"),
-          features,
-          logger,
-          analysis,
+      // Set the SARIF id outputs only if we have results for them, to avoid
+      // having keys with empty values in the action output.
+      if (uploadResults[analyses.AnalysisKind.CodeScanning] !== undefined) {
+        core.setOutput(
+          "sarif-id",
+          uploadResults[analyses.AnalysisKind.CodeScanning].sarifID,
+        );
+      }
+      if (uploadResults[analyses.AnalysisKind.CodeQuality] !== undefined) {
+        core.setOutput(
+          "quality-sarif-id",
+          uploadResults[analyses.AnalysisKind.CodeQuality].sarifID,
         );
-        core.setOutput("quality-sarif-id", qualityUploadResult.sarifID);
       }
     } else {
       logger.info("Not uploading results");
@@ -393,14 +438,11 @@ async function run() {
 
     // Store dependency cache(s) if dependency caching is enabled.
     if (shouldStoreCache(config.dependencyCachingEnabled)) {
-      const minimizeJavaJars = await features.getValue(
-        Feature.JavaMinimizeDependencyJars,
-        codeql,
-      );
       dependencyCacheResults = await uploadDependencyCaches(
+        codeql,
+        features,
         config,
         logger,
-        minimizeJavaJars,
       );
     }
 
@@ -408,12 +450,12 @@ async function run() {
     if (util.isInTestMode()) {
       logger.debug("In test mode. Waiting for processing is disabled.");
     } else if (
-      uploadResult !== undefined &&
+      uploadResults?.[analyses.AnalysisKind.CodeScanning] !== undefined &&
       actionsUtil.getRequiredInput("wait-for-processing") === "true"
     ) {
       await uploadLib.waitForProcessing(
         getRepositoryNwo(),
-        uploadResult.sarifID,
+        uploadResults[analyses.AnalysisKind.CodeScanning].sarifID,
         getActionsLogger(),
       );
     }
@@ -450,13 +492,16 @@ async function run() {
     return;
   }
 
-  if (runStats && uploadResult) {
+  if (
+    runStats !== undefined &&
+    uploadResults?.[analyses.AnalysisKind.CodeScanning] !== undefined
+  ) {
     await sendStatusReport(
       startedAt,
       config,
       {
         ...runStats,
-        ...uploadResult.statusReport,
+        ...uploadResults[analyses.AnalysisKind.CodeScanning].statusReport,
       },
       undefined,
       trapCacheUploadTime,
@@ -466,7 +511,7 @@ async function run() {
       dependencyCacheResults,
       logger,
     );
-  } else if (runStats) {
+  } else if (runStats !== undefined) {
     await sendStatusReport(
       startedAt,
       config,

src/analyze.test.ts

@@ -4,10 +4,8 @@ import * as path from "path";
 import test from "ava";
 import * as sinon from "sinon";
 
-import * as actionsUtil from "./actions-util";
 import { CodeQuality, CodeScanning } from "./analyses";
 import {
-  exportedForTesting,
   runQueries,
   defaultSuites,
   resolveQuerySuiteAlias,
@@ -39,7 +37,6 @@ test("status report fields", async (t) => {
     setupActionsVars(tmpDir, tmpDir);
 
     const memoryFlag = "";
-    const addSnippetsFlag = "";
     const threadsFlag = "";
     sinon.stub(uploadLib, "validateSarifFileSchema");
 
@@ -105,7 +102,6 @@ test("status report fields", async (t) => {
       const statusReport = await runQueries(
         tmpDir,
         memoryFlag,
-        addSnippetsFlag,
         threadsFlag,
         undefined,
         undefined,
@@ -131,204 +127,6 @@ test("status report fields", async (t) => {
   });
 });
 
-function runGetDiffRanges(changes: number, patch: string[] | undefined): any {
-  sinon
-    .stub(actionsUtil, "getRequiredInput")
-    .withArgs("checkout_path")
-    .returns("/checkout/path");
-  return exportedForTesting.getDiffRanges(
-    {
-      filename: "test.txt",
-      changes,
-      patch: patch?.join("\n"),
-    },
-    getRunnerLogger(true),
-  );
-}
-
-test("getDiffRanges: file unchanged", async (t) => {
-  const diffRanges = runGetDiffRanges(0, undefined);
-  t.deepEqual(diffRanges, []);
-});
-
-test("getDiffRanges: file diff too large", async (t) => {
-  const diffRanges = runGetDiffRanges(1000000, undefined);
-  t.deepEqual(diffRanges, [
-    {
-      path: "/checkout/path/test.txt",
-      startLine: 0,
-      endLine: 0,
-    },
-  ]);
-});
-
-test("getDiffRanges: diff thunk with single addition range", async (t) => {
-  const diffRanges = runGetDiffRanges(2, [
-    "@@ -30,6 +50,8 @@",
-    " a",
-    " b",
-    " c",
-    "+1",
-    "+2",
-    " d",
-    " e",
-    " f",
-  ]);
-  t.deepEqual(diffRanges, [
-    {
-      path: "/checkout/path/test.txt",
-      startLine: 53,
-      endLine: 54,
-    },
-  ]);
-});
-
-test("getDiffRanges: diff thunk with single deletion range", async (t) => {
-  const diffRanges = runGetDiffRanges(2, [
-    "@@ -30,8 +50,6 @@",
-    " a",
-    " b",
-    " c",
-    "-1",
-    "-2",
-    " d",
-    " e",
-    " f",
-  ]);
-  t.deepEqual(diffRanges, []);
-});
-
-test("getDiffRanges: diff thunk with single update range", async (t) => {
-  const diffRanges = runGetDiffRanges(2, [
-    "@@ -30,7 +50,7 @@",
-    " a",
-    " b",
-    " c",
-    "-1",
-    "+2",
-    " d",
-    " e",
-    " f",
-  ]);
-  t.deepEqual(diffRanges, [
-    {
-      path: "/checkout/path/test.txt",
-      startLine: 53,
-      endLine: 53,
-    },
-  ]);
-});
-
-test("getDiffRanges: diff thunk with addition ranges", async (t) => {
-  const diffRanges = runGetDiffRanges(2, [
-    "@@ -30,7 +50,9 @@",
-    " a",
-    " b",
-    " c",
-    "+1",
-    " c",
-    "+2",
-    " d",
-    " e",
-    " f",
-  ]);
-  t.deepEqual(diffRanges, [
-    {
-      path: "/checkout/path/test.txt",
-      startLine: 53,
-      endLine: 53,
-    },
-    {
-      path: "/checkout/path/test.txt",
-      startLine: 55,
-      endLine: 55,
-    },
-  ]);
-});
-
-test("getDiffRanges: diff thunk with mixed ranges", async (t) => {
-  const diffRanges = runGetDiffRanges(2, [
-    "@@ -30,7 +50,7 @@",
-    " a",
-    " b",
-    " c",
-    "-1",
-    " d",
-    "-2",
-    "+3",
-    " e",
-    " f",
-    "+4",
-    "+5",
-    " g",
-    " h",
-    " i",
-  ]);
-  t.deepEqual(diffRanges, [
-    {
-      path: "/checkout/path/test.txt",
-      startLine: 54,
-      endLine: 54,
-    },
-    {
-      path: "/checkout/path/test.txt",
-      startLine: 57,
-      endLine: 58,
-    },
-  ]);
-});
-
-test("getDiffRanges: multiple diff thunks", async (t) => {
-  const diffRanges = runGetDiffRanges(2, [
-    "@@ -30,6 +50,8 @@",
-    " a",
-    " b",
-    " c",
-    "+1",
-    "+2",
-    " d",
-    " e",
-    " f",
-    "@@ -130,6 +150,8 @@",
-    " a",
-    " b",
-    " c",
-    "+1",
-    "+2",
-    " d",
-    " e",
-    " f",
-  ]);
-  t.deepEqual(diffRanges, [
-    {
-      path: "/checkout/path/test.txt",
-      startLine: 53,
-      endLine: 54,
-    },
-    {
-      path: "/checkout/path/test.txt",
-      startLine: 153,
-      endLine: 154,
-    },
-  ]);
-});
-
-test("getDiffRanges: no diff context lines", async (t) => {
-  const diffRanges = runGetDiffRanges(2, ["@@ -30 +50,2 @@", "+1", "+2"]);
-  t.deepEqual(diffRanges, [
-    {
-      path: "/checkout/path/test.txt",
-      startLine: 50,
-      endLine: 51,
-    },
-  ]);
-});
-
-test("getDiffRanges: malformed thunk header", async (t) => {
-  const diffRanges = runGetDiffRanges(2, ["@@ 30 +50,2 @@", "+1", "+2"]);
-  t.deepEqual(diffRanges, undefined);
-});
-
 test("resolveQuerySuiteAlias", (t) => {
   // default query suite names should resolve to something language-specific ending in `.qls`.
   for (const suite of defaultSuites) {

src/analyze.ts

@@ -3,16 +3,10 @@ import * as path from "path";
 import { performance } from "perf_hooks";
 
 import * as io from "@actions/io";
-import * as del from "del";
 import * as yaml from "js-yaml";
 
-import {
-  getRequiredInput,
-  getTemporaryDirectory,
-  PullRequestBranches,
-} from "./actions-util";
+import { getTemporaryDirectory, PullRequestBranches } from "./actions-util";
 import * as analyses from "./analyses";
-import { getApiClient } from "./api-client";
 import { setupCppAutobuild } from "./autobuild";
 import { type CodeQL } from "./codeql";
 import * as configUtils from "./config-utils";
@@ -21,13 +15,13 @@ import { addDiagnostic, makeDiagnostic } from "./diagnostics";
 import {
   DiffThunkRange,
   writeDiffRangesJsonFile,
+  getPullRequestEditedDiffRanges,
 } from "./diff-informed-analysis-utils";
 import { EnvVar } from "./environment";
 import { FeatureEnablement, Feature } from "./feature-flags";
 import { KnownLanguage, Language } from "./languages";
 import { Logger, withGroupAsync } from "./logging";
 import { OverlayDatabaseMode } from "./overlay-database-utils";
-import { getRepositoryNwoFromEnv } from "./repository";
 import { DatabaseCreationTimings, EventReport } from "./status-report";
 import { endTracingForCluster } from "./tracer-config";
 import * as util from "./util";
@@ -44,89 +38,26 @@ export class CodeQLAnalysisError extends Error {
   }
 }
 
-export interface QueriesStatusReport {
-  /**
-   * Time taken in ms to run queries for actions (or undefined if this language was not analyzed).
-   *
-   * The "builtin" designation is now outdated with the move to CLI config parsing: this is the time
-   * taken to run _all_ the queries.
-   */
-  analyze_builtin_queries_actions_duration_ms?: number;
-  /**
-   * Time taken in ms to run queries for cpp (or undefined if this language was not analyzed).
-   *
-   * The "builtin" designation is now outdated with the move to CLI config parsing: this is the time
-   * taken to run _all_ the queries.
-   */
-  analyze_builtin_queries_cpp_duration_ms?: number;
-  /**
-   * Time taken in ms to run queries for csharp (or undefined if this language was not analyzed).
-   *
-   * The "builtin" designation is now outdated with the move to CLI config parsing: this is the time
-   * taken to run _all_ the queries.
-   */
-  analyze_builtin_queries_csharp_duration_ms?: number;
-  /**
-   * Time taken in ms to run queries for go (or undefined if this language was not analyzed).
-   *
-   * The "builtin" designation is now outdated with the move to CLI config parsing: this is the time
-   * taken to run _all_ the queries.
-   */
-  analyze_builtin_queries_go_duration_ms?: number;
-  /**
-   * Time taken in ms to run queries for java (or undefined if this language was not analyzed).
-   *
-   * The "builtin" designation is now outdated with the move to CLI config parsing: this is the time
-   * taken to run _all_ the queries.
-   */
-  analyze_builtin_queries_java_duration_ms?: number;
-  /**
-   * Time taken in ms to run queries for javascript (or undefined if this language was not analyzed).
-   *
-   * The "builtin" designation is now outdated with the move to CLI config parsing: this is the time
-   * taken to run _all_ the queries.
-   */
-  analyze_builtin_queries_javascript_duration_ms?: number;
-  /**
-   * Time taken in ms to run queries for python (or undefined if this language was not analyzed).
-   *
-   * The "builtin" designation is now outdated with the move to CLI config parsing: this is the time
-   * taken to run _all_ the queries.
-   */
-  analyze_builtin_queries_python_duration_ms?: number;
-  /**
-   * Time taken in ms to run queries for ruby (or undefined if this language was not analyzed).
-   *
-   * The "builtin" designation is now outdated with the move to CLI config parsing: this is the time
-   * taken to run _all_ the queries.
-   */
-  analyze_builtin_queries_ruby_duration_ms?: number;
-  /** Time taken in ms to run queries for swift (or undefined if this language was not analyzed).
-   *
-   * The "builtin" designation is now outdated with the move to CLI config parsing: this is the time
-   * taken to run _all_ the queries.
-   */
-  analyze_builtin_queries_swift_duration_ms?: number;
+type KnownLanguageKey = keyof typeof KnownLanguage;
 
-  /** Time taken in ms to interpret results for actions (or undefined if this language was not analyzed). */
-  interpret_results_actions_duration_ms?: number;
-  /** Time taken in ms to interpret results for cpp (or undefined if this language was not analyzed). */
-  interpret_results_cpp_duration_ms?: number;
-  /** Time taken in ms to interpret results for csharp (or undefined if this language was not analyzed). */
-  interpret_results_csharp_duration_ms?: number;
-  /** Time taken in ms to interpret results for go (or undefined if this language was not analyzed). */
-  interpret_results_go_duration_ms?: number;
-  /** Time taken in ms to interpret results for java (or undefined if this language was not analyzed). */
-  interpret_results_java_duration_ms?: number;
-  /** Time taken in ms to interpret results for javascript (or undefined if this language was not analyzed). */
-  interpret_results_javascript_duration_ms?: number;
-  /** Time taken in ms to interpret results for python (or undefined if this language was not analyzed). */
-  interpret_results_python_duration_ms?: number;
-  /** Time taken in ms to interpret results for ruby (or undefined if this language was not analyzed). */
-  interpret_results_ruby_duration_ms?: number;
-  /** Time taken in ms to interpret results for swift (or undefined if this language was not analyzed). */
-  interpret_results_swift_duration_ms?: number;
+type RunQueriesDurationStatusReport = {
+  /**
+   * Time taken in ms to run queries for the language (or undefined if this language was not analyzed).
+   *
+   * The "builtin" designation is now outdated with the move to CLI config parsing: this is the time
+   * taken to run _all_ the queries.
+   */
+  [L in KnownLanguageKey as `analyze_builtin_queries_${L}_duration_ms`]?: number;
+};
 
+type InterpretResultsDurationStatusReport = {
+  /** Time taken in ms to interpret results for the language (or undefined if this language was not analyzed). */
+  [L in KnownLanguageKey as `interpret_results_${L}_duration_ms`]?: number;
+};
+
+export interface QueriesStatusReport
+  extends RunQueriesDurationStatusReport,
+    InterpretResultsDurationStatusReport {
   /**
    * Whether the analysis is diff-informed (in the sense that the action generates a diff-range data
    * extension for the analysis, regardless of whether the data extension is actually used by queries).
@@ -313,185 +244,6 @@ export async function setupDiffInformedQueryRun(
   );
 }
 
-/**
- * Return the file line ranges that were added or modified in the pull request.
- *
- * @param branches The base and head branches of the pull request.
- * @param logger
- * @returns An array of tuples, where each tuple contains the absolute path of a
- * file, the start line and the end line (both 1-based and inclusive) of an
- * added or modified range in that file. Returns `undefined` if the action was
- * not triggered by a pull request or if there was an error.
- */
-async function getPullRequestEditedDiffRanges(
-  branches: PullRequestBranches,
-  logger: Logger,
-): Promise<DiffThunkRange[] | undefined> {
-  const fileDiffs = await getFileDiffsWithBasehead(branches, logger);
-  if (fileDiffs === undefined) {
-    return undefined;
-  }
-  if (fileDiffs.length >= 300) {
-    // The "compare two commits" API returns a maximum of 300 changed files. If
-    // we see that many changed files, it is possible that there could be more,
-    // with the rest being truncated. In this case, we should not attempt to
-    // compute the diff ranges, as the result would be incomplete.
-    logger.warning(
-      `Cannot retrieve the full diff because there are too many ` +
-        `(${fileDiffs.length}) changed files in the pull request.`,
-    );
-    return undefined;
-  }
-  const results: DiffThunkRange[] = [];
-  for (const filediff of fileDiffs) {
-    const diffRanges = getDiffRanges(filediff, logger);
-    if (diffRanges === undefined) {
-      return undefined;
-    }
-    results.push(...diffRanges);
-  }
-  return results;
-}
-
-/**
- * This interface is an abbreviated version of the file diff object returned by
- * the GitHub API.
- */
-interface FileDiff {
-  filename: string;
-  changes: number;
-  // A patch may be absent if the file is binary, if the file diff is too large,
-  // or if the file is unchanged.
-  patch?: string | undefined;
-}
-
-async function getFileDiffsWithBasehead(
-  branches: PullRequestBranches,
-  logger: Logger,
-): Promise<FileDiff[] | undefined> {
-  // Check CODE_SCANNING_REPOSITORY first. If it is empty or not set, fall back
-  // to GITHUB_REPOSITORY.
-  const repositoryNwo = getRepositoryNwoFromEnv(
-    "CODE_SCANNING_REPOSITORY",
-    "GITHUB_REPOSITORY",
-  );
-  const basehead = `${branches.base}...${branches.head}`;
-  try {
-    const response = await getApiClient().rest.repos.compareCommitsWithBasehead(
-      {
-        owner: repositoryNwo.owner,
-        repo: repositoryNwo.repo,
-        basehead,
-        per_page: 1,
-      },
-    );
-    logger.debug(
-      `Response from compareCommitsWithBasehead(${basehead}):` +
-        `\n${JSON.stringify(response, null, 2)}`,
-    );
-    return response.data.files;
-  } catch (error: any) {
-    if (error.status) {
-      logger.warning(`Error retrieving diff ${basehead}: ${error.message}`);
-      logger.debug(
-        `Error running compareCommitsWithBasehead(${basehead}):` +
-          `\nRequest: ${JSON.stringify(error.request, null, 2)}` +
-          `\nError Response: ${JSON.stringify(error.response, null, 2)}`,
-      );
-      return undefined;
-    } else {
-      throw error;
-    }
-  }
-}
-
-function getDiffRanges(
-  fileDiff: FileDiff,
-  logger: Logger,
-): DiffThunkRange[] | undefined {
-  // Diff-informed queries expect the file path to be absolute. CodeQL always
-  // uses forward slashes as the path separator, so on Windows we need to
-  // replace any backslashes with forward slashes.
-  const filename = path
-    .join(getRequiredInput("checkout_path"), fileDiff.filename)
-    .replaceAll(path.sep, "/");
-
-  if (fileDiff.patch === undefined) {
-    if (fileDiff.changes === 0) {
-      // There are situations where a changed file legitimately has no diff.
-      // For example, the file may be a binary file, or that the file may have
-      // been renamed with no changes to its contents. In these cases, the
-      // file would be reported as having 0 changes, and we can return an empty
-      // array to indicate no diff range in this file.
-      return [];
-    }
-    // If a file is reported to have nonzero changes but no patch, that may be
-    // due to the file diff being too large. In this case, we should fall back
-    // to a special diff range that covers the entire file.
-    return [
-      {
-        path: filename,
-        startLine: 0,
-        endLine: 0,
-      },
-    ];
-  }
-
-  // The 1-based file line number of the current line
-  let currentLine = 0;
-  // The 1-based file line number that starts the current range of added lines
-  let additionRangeStartLine: number | undefined = undefined;
-  const diffRanges: DiffThunkRange[] = [];
-
-  const diffLines = fileDiff.patch.split("\n");
-  // Adding a fake context line at the end ensures that the following loop will
-  // always terminate the last range of added lines.
-  diffLines.push(" ");
-
-  for (const diffLine of diffLines) {
-    if (diffLine.startsWith("-")) {
-      // Ignore deletions completely -- we do not even want to consider them when
-      // calculating consecutive ranges of added lines.
-      continue;
-    }
-    if (diffLine.startsWith("+")) {
-      if (additionRangeStartLine === undefined) {
-        additionRangeStartLine = currentLine;
-      }
-      currentLine++;
-      continue;
-    }
-    if (additionRangeStartLine !== undefined) {
-      // Any line that does not start with a "+" or "-" terminates the current
-      // range of added lines.
-      diffRanges.push({
-        path: filename,
-        startLine: additionRangeStartLine,
-        endLine: currentLine - 1,
-      });
-      additionRangeStartLine = undefined;
-    }
-    if (diffLine.startsWith("@@ ")) {
-      // A new hunk header line resets the current line number.
-      const match = diffLine.match(/^@@ -\d+(?:,\d+)? \+(\d+)(?:,\d+)? @@/);
-      if (match === null) {
-        logger.warning(
-          `Cannot parse diff hunk header for ${fileDiff.filename}: ${diffLine}`,
-        );
-        return undefined;
-      }
-      currentLine = parseInt(match[1], 10);
-      continue;
-    }
-    if (diffLine.startsWith(" ")) {
-      // An unchanged context line advances the current line number.
-      currentLine++;
-      continue;
-    }
-  }
-  return diffRanges;
-}
-
 /**
  * Create an extension pack in the temporary directory that contains the file
  * line ranges that were added or modified in the pull request.
@@ -621,7 +373,6 @@ export function addSarifExtension(
 export async function runQueries(
   sarifFolder: string,
   memoryFlag: string,
-  addSnippetsFlag: string,
   threadsFlag: string,
   diffRangePackDir: string | undefined,
   automationDetailsId: string | undefined,
@@ -811,7 +562,6 @@ export async function runQueries(
       databasePath,
       queries,
       sarifFile,
-      addSnippetsFlag,
       threadsFlag,
       enableDebugLogging ? "-vv" : "-v",
       sarifRunPropertyFlag,
@@ -855,7 +605,7 @@ export async function runFinalize(
   logger: Logger,
 ): Promise<DatabaseCreationTimings> {
   try {
-    await del.deleteAsync(outputDir, { force: true });
+    await fs.promises.rm(outputDir, { force: true, recursive: true });
   } catch (error: any) {
     if (error?.code !== "ENOENT") {
       throw error;
@@ -922,7 +672,3 @@ export async function warnIfGoInstalledAfterInit(
     }
   }
 }
-
-export const exportedForTesting = {
-  getDiffRanges,
-};

src/api-client.test.ts

@@ -169,4 +169,32 @@ test("wrapApiConfigurationError correctly wraps specific configuration errors",
     res,
     new util.ConfigurationError("Resource not accessible by integration"),
   );
+
+  // Enablement errors.
+  const enablementErrorMessages = [
+    "Code Security must be enabled for this repository to use code scanning",
+    "Advanced Security must be enabled for this repository to use code scanning",
+    "Code Scanning is not enabled for this repository. Please enable code scanning in the repository settings.",
+  ];
+  const transforms = [
+    (msg: string) => msg,
+    (msg: string) => msg.toLowerCase(),
+    (msg: string) => msg.toLocaleUpperCase(),
+  ];
+
+  for (const enablementErrorMessage of enablementErrorMessages) {
+    for (const transform of transforms) {
+      const enablementError = new util.HTTPError(
+        transform(enablementErrorMessage),
+        403,
+      );
+      res = api.wrapApiConfigurationError(enablementError);
+      t.deepEqual(
+        res,
+        new util.ConfigurationError(
+          api.getFeatureEnablementError(enablementError.message),
+        ),
+      );
+    }
+  }
 });

src/api-client.ts

@@ -1,18 +1,17 @@
 import * as core from "@actions/core";
 import * as githubUtils from "@actions/github/lib/utils";
 import * as retry from "@octokit/plugin-retry";
-import consoleLogLevel from "console-log-level";
 
 import { getActionVersion, getRequiredInput } from "./actions-util";
 import { Logger } from "./logging";
 import { getRepositoryNwo, RepositoryNwo } from "./repository";
 import {
+  asHTTPError,
   ConfigurationError,
   getRequiredEnvParam,
   GITHUB_DOTCOM_URL,
   GitHubVariant,
   GitHubVersion,
-  isHTTPError,
   parseGitHubUrl,
   parseMatrixInput,
 } from "./util";
@@ -50,7 +49,12 @@ function createApiClientWithDetails(
     githubUtils.getOctokitOptions(auth, {
       baseUrl: apiDetails.apiURL,
       userAgent: `CodeQL-Action/${getActionVersion()}`,
-      log: consoleLogLevel({ level: "debug" }),
+      log: {
+        debug: core.debug,
+        info: core.info,
+        warn: core.warning,
+        error: core.error,
+      },
     }),
   );
 }
@@ -279,23 +283,49 @@ export async function getRepositoryProperties(repositoryNwo: RepositoryNwo) {
   });
 }
 
+function isEnablementError(msg: string) {
+  return [
+    /Code Security must be enabled/i,
+    /Advanced Security must be enabled/i,
+    /Code Scanning is not enabled/i,
+  ].some((pattern) => pattern.test(msg));
+}
+
+// TODO: Move to `error-messages.ts` after refactoring import order to avoid cycle
+// since `error-messages.ts` currently depends on this file.
+export function getFeatureEnablementError(message: string): string {
+  return `Please verify that the necessary features are enabled: ${message}`;
+}
+
 export function wrapApiConfigurationError(e: unknown) {
-  if (isHTTPError(e)) {
+  const httpError = asHTTPError(e);
+  if (httpError !== undefined) {
     if (
-      e.message.includes("API rate limit exceeded for installation") ||
-      e.message.includes("commit not found") ||
-      e.message.includes("Resource not accessible by integration") ||
-      /ref .* not found in this repository/.test(e.message)
+      [
+        /API rate limit exceeded/,
+        /commit not found/,
+        /Resource not accessible by integration/,
+        /ref .* not found in this repository/,
+      ].some((pattern) => pattern.test(httpError.message))
     ) {
-      return new ConfigurationError(e.message);
-    } else if (
-      e.message.includes("Bad credentials") ||
-      e.message.includes("Not Found")
+      return new ConfigurationError(httpError.message);
+    }
+    if (
+      httpError.message.includes("Bad credentials") ||
+      httpError.message.includes("Not Found")
     ) {
       return new ConfigurationError(
         "Please check that your token is valid and has the required permissions: contents: read, security-events: write",
       );
     }
+    if (httpError.status === 403 && isEnablementError(httpError.message)) {
+      return new ConfigurationError(
+        getFeatureEnablementError(httpError.message),
+      );
+    }
+    if (httpError.status === 429) {
+      return new ConfigurationError("API rate limit exceeded");
+    }
   }
   return e;
 }

src/caching-utils.ts

@@ -1,3 +1,5 @@
+import * as crypto from "crypto";
+
 import * as core from "@actions/core";
 
 import { getOptionalInput, isDefaultSetup } from "./actions-util";
@@ -71,6 +73,33 @@ export function getCachingKind(input: string | undefined): CachingKind {
   }
 }
 
+// The length to which `createCacheKeyHash` truncates hash strings.
+export const cacheKeyHashLength = 16;
+
+/**
+ * Creates a SHA-256 hash of the cache key components to ensure uniqueness
+ * while keeping the cache key length manageable.
+ *
+ * @param components Object containing all components that should influence cache key uniqueness
+ * @returns A short SHA-256 hash (first 16 characters) of the components
+ */
+export function createCacheKeyHash(components: Record<string, any>): string {
+  // From https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/JSON/stringify
+  //
+  // "Properties are visited using the same algorithm as Object.keys(), which
+  // has a well-defined order and is stable across implementations. For example,
+  // JSON.stringify on the same object will always produce the same string, and
+  // JSON.parse(JSON.stringify(obj)) would produce an object with the same key
+  // ordering as the original (assuming the object is completely
+  // JSON-serializable)."
+  const componentsJson = JSON.stringify(components);
+  return crypto
+    .createHash("sha256")
+    .update(componentsJson)
+    .digest("hex")
+    .substring(0, cacheKeyHashLength);
+}
+
 /** Determines whether dependency caching is enabled. */
 export function getDependencyCachingEnabled(): CachingKind {
   // If the workflow specified something always respect that

src/cli-errors.test.ts

@@ -310,6 +310,20 @@ test("wrapCliConfigurationError - pack cannot be found", (t) => {
   t.true(wrappedError instanceof ConfigurationError);
 });
 
+test("wrapCliConfigurationError - unknown query file", (t) => {
+  const commandError = new CommandInvocationError(
+    "codeql",
+    ["database", "init"],
+    2,
+    "my-query-file is not a .ql file, .qls file, a directory, or a query pack specification. See the logs for more details.",
+  );
+  const cliError = new CliError(commandError);
+
+  const wrappedError = wrapCliConfigurationError(cliError);
+
+  t.true(wrappedError instanceof ConfigurationError);
+});
+
 test("wrapCliConfigurationError - pack missing auth", (t) => {
   const commandError = new CommandInvocationError(
     "codeql",

src/cli-errors.ts

@@ -264,6 +264,9 @@ export const cliErrorsConfig: Record<
       new RegExp(
         "Query pack .* cannot be found\\. Check the spelling of the pack\\.",
       ),
+      new RegExp(
+        "is not a .ql file, .qls file, a directory, or a query pack specification.",
+      ),
     ],
   },
   [CliConfigErrorCategory.PackMissingAuth]: {