Merge pull request #2961 from github/koesie10/disable-combine-sarif-files-ghes

Unconditionally disable combining SARIF files for GHES 3.18
Merge pull request #2945 from github/cklin/overlay-analysis
2026-10-18 00:11:34 +03:00 · 2025-07-08 10:01:06 +02:00 · 2025-07-07 08:41:24 -07:00 · 2025-07-07 08:15:20 -07:00 · 2025-07-07 08:14:41 -07:00 · 2025-07-07 08:13:06 -07:00
61 changed files with 2144 additions and 251 deletions
@@ -2,6 +2,10 @@

 See the [releases page](https://github.com/github/codeql-action/releases) for the relevant changes to the CodeQL CLI and language packs.

+## [UNRELEASED]
+
+No user facing changes.
+
 ## 3.29.2 - 30 Jun 2025

 - Experimental: When the `quality-queries` input for the `init` action is provided with an argument, separate `.quality.sarif` files are produced and uploaded for each language with the results of the specified queries. Do not use this in production as it is part of an internal experiment and subject to change at any time. [#2935](https://github.com/github/codeql-action/pull/2935)
@@ -49,10 +49,13 @@ exports.isDefaultSetup = isDefaultSetup;
 exports.prettyPrintInvocation = prettyPrintInvocation;
 exports.ensureEndsInPeriod = ensureEndsInPeriod;
 exports.runTool = runTool;
+exports.getPullRequestBranches = getPullRequestBranches;
+exports.isAnalyzingPullRequest = isAnalyzingPullRequest;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const core = __importStar(require("@actions/core"));
 const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
+const github = __importStar(require("@actions/github"));
 const io = __importStar(require("@actions/io"));
 const util_1 = require("./util");
 // eslint-disable-next-line import/no-commonjs, @typescript-eslint/no-require-imports
@@ -352,4 +355,41 @@ const restoreInputs = function () {
    }
 };
 exports.restoreInputs = restoreInputs;
+/**
+ * Returns the base and head branches of the pull request being analyzed.
+ *
+ * @returns the base and head branches of the pull request, or undefined if
+ * we are not analyzing a pull request.
+ */
+function getPullRequestBranches() {
+    const pullRequest = github.context.payload.pull_request;
+    if (pullRequest) {
+        return {
+            base: pullRequest.base.ref,
+            // We use the head label instead of the head ref here, because the head
+            // ref lacks owner information and by itself does not uniquely identify
+            // the head branch (which may be in a forked repository).
+            head: pullRequest.head.label,
+        };
+    }
+    // PR analysis under Default Setup does not have the pull_request context,
+    // but it should set CODE_SCANNING_REF and CODE_SCANNING_BASE_BRANCH.
+    const codeScanningRef = process.env.CODE_SCANNING_REF;
+    const codeScanningBaseBranch = process.env.CODE_SCANNING_BASE_BRANCH;
+    if (codeScanningRef && codeScanningBaseBranch) {
+        return {
+            base: codeScanningBaseBranch,
+            // PR analysis under Default Setup analyzes the PR head commit instead of
+            // the merge commit, so we can use the provided ref directly.
+            head: codeScanningRef,
+        };
+    }
+    return undefined;
+}
+/**
+ * Returns whether we are analyzing a pull request.
+ */
+function isAnalyzingPullRequest() {
+    return getPullRequestBranches() !== undefined;
+}
 //# sourceMappingURL=actions-util.js.map
@@ -1 +1 @@
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@@ -1,14 +1,78 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 var __importDefault = (this && this.__importDefault) || function (mod) {
    return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+const github = __importStar(require("@actions/github"));
 const ava_1 = __importDefault(require("ava"));
+const actions_util_1 = require("./actions-util");
 const api_client_1 = require("./api-client");
 const environment_1 = require("./environment");
 const testing_utils_1 = require("./testing-utils");
 const util_1 = require("./util");
 (0, testing_utils_1.setupTests)(ava_1.default);
+function withMockedContext(mockPayload, testFn) {
+    const originalPayload = github.context.payload;
+    github.context.payload = mockPayload;
+    try {
+        return testFn();
+    }
+    finally {
+        github.context.payload = originalPayload;
+    }
+}
+function withMockedEnv(envVars, testFn) {
+    const originalEnv = { ...process.env };
+    // Apply environment changes
+    for (const [key, value] of Object.entries(envVars)) {
+        if (value === undefined) {
+            delete process.env[key];
+        }
+        else {
+            process.env[key] = value;
+        }
+    }
+    try {
+        return testFn();
+    }
+    finally {
+        // Restore original environment
+        process.env = originalEnv;
+    }
+}
 (0, ava_1.default)("computeAutomationID()", async (t) => {
    let actualAutomationID = (0, api_client_1.computeAutomationID)(".github/workflows/codeql-analysis.yml:analyze", '{"language": "javascript", "os": "linux"}');
    t.deepEqual(actualAutomationID, ".github/workflows/codeql-analysis.yml:analyze/language:javascript/os:linux/");
@@ -25,6 +89,78 @@ const util_1 = require("./util");
    actualAutomationID = (0, api_client_1.computeAutomationID)(".github/workflows/codeql-analysis.yml:analyze", undefined);
    t.deepEqual(actualAutomationID, ".github/workflows/codeql-analysis.yml:analyze/");
 });
+(0, ava_1.default)("getPullRequestBranches() with pull request context", (t) => {
+    withMockedContext({
+        pull_request: {
+            number: 123,
+            base: { ref: "main" },
+            head: { label: "user:feature-branch" },
+        },
+    }, () => {
+        t.deepEqual((0, actions_util_1.getPullRequestBranches)(), {
+            base: "main",
+            head: "user:feature-branch",
+        });
+        t.is((0, actions_util_1.isAnalyzingPullRequest)(), true);
+    });
+});
+(0, ava_1.default)("getPullRequestBranches() returns undefined with push context", (t) => {
+    withMockedContext({
+        push: {
+            ref: "refs/heads/main",
+        },
+    }, () => {
+        t.is((0, actions_util_1.getPullRequestBranches)(), undefined);
+        t.is((0, actions_util_1.isAnalyzingPullRequest)(), false);
+    });
+});
+(0, ava_1.default)("getPullRequestBranches() with Default Setup environment variables", (t) => {
+    withMockedContext({}, () => {
+        withMockedEnv({
+            CODE_SCANNING_REF: "refs/heads/feature-branch",
+            CODE_SCANNING_BASE_BRANCH: "main",
+        }, () => {
+            t.deepEqual((0, actions_util_1.getPullRequestBranches)(), {
+                base: "main",
+                head: "refs/heads/feature-branch",
+            });
+            t.is((0, actions_util_1.isAnalyzingPullRequest)(), true);
+        });
+    });
+});
+(0, ava_1.default)("getPullRequestBranches() returns undefined when only CODE_SCANNING_REF is set", (t) => {
+    withMockedContext({}, () => {
+        withMockedEnv({
+            CODE_SCANNING_REF: "refs/heads/feature-branch",
+            CODE_SCANNING_BASE_BRANCH: undefined,
+        }, () => {
+            t.is((0, actions_util_1.getPullRequestBranches)(), undefined);
+            t.is((0, actions_util_1.isAnalyzingPullRequest)(), false);
+        });
+    });
+});
+(0, ava_1.default)("getPullRequestBranches() returns undefined when only CODE_SCANNING_BASE_BRANCH is set", (t) => {
+    withMockedContext({}, () => {
+        withMockedEnv({
+            CODE_SCANNING_REF: undefined,
+            CODE_SCANNING_BASE_BRANCH: "main",
+        }, () => {
+            t.is((0, actions_util_1.getPullRequestBranches)(), undefined);
+            t.is((0, actions_util_1.isAnalyzingPullRequest)(), false);
+        });
+    });
+});
+(0, ava_1.default)("getPullRequestBranches() returns undefined when no PR context", (t) => {
+    withMockedContext({}, () => {
+        withMockedEnv({
+            CODE_SCANNING_REF: undefined,
+            CODE_SCANNING_BASE_BRANCH: undefined,
+        }, () => {
+            t.is((0, actions_util_1.getPullRequestBranches)(), undefined);
+            t.is((0, actions_util_1.isAnalyzingPullRequest)(), false);
+        });
+    });
+});
 (0, ava_1.default)("initializeEnvironment", (t) => {
    (0, util_1.initializeEnvironment)("1.2.3");
    t.deepEqual(process.env[environment_1.EnvVar.VERSION], "1.2.3");
@@ -1 +1 @@
-{"version":3,"file":"actions-util.test.js","sourceRoot":"","sources":["../src/actions-util.test.ts"],"names":[],"mappings":";;;;;AAAA,8CAAuB;AAEvB,6CAAmD;AACnD,+CAAuC;AACvC,mDAA6C;AAC7C,iCAA+C;AAE/C,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,IAAA,aAAI,EAAC,uBAAuB,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACxC,IAAI,kBAAkB,GAAG,IAAA,gCAAmB,EAC1C,+CAA+C,EAC/C,2CAA2C,CAC5C,CAAC;IACF,CAAC,CAAC,SAAS,CACT,kBAAkB,EAClB,6EAA6E,CAC9E,CAAC;IAEF,gCAAgC;IAChC,kBAAkB,GAAG,IAAA,gCAAmB,EACtC,+CAA+C,EAC/C,2CAA2C,CAC5C,CAAC;IACF,CAAC,CAAC,SAAS,CACT,kBAAkB,EAClB,6EAA6E,CAC9E,CAAC;IAEF,6DAA6D;IAC7D,kBAAkB,GAAG,IAAA,gCAAmB,EACtC,+CAA+C,EAC/C,IAAI,CACL,CAAC;IACF,CAAC,CAAC,SAAS,CACT,kBAAkB,EAClB,gDAAgD,CACjD,CAAC;IAEF,sCAAsC;IACtC,kBAAkB,GAAG,IAAA,gCAAmB,EACtC,+CAA+C,EAC/C,qDAAqD,CACtD,CAAC;IACF,CAAC,CAAC,SAAS,CACT,kBAAkB,EAClB,gEAAgE,CACjE,CAAC;IAEF,8BAA8B;IAC9B,kBAAkB,GAAG,IAAA,gCAAmB,EACtC,+CAA+C,EAC/C,SAAS,CACV,CAAC;IACF,CAAC,CAAC,SAAS,CACT,kBAAkB,EAClB,gDAAgD,CACjD,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,uBAAuB,EAAE,CAAC,CAAC,EAAE,EAAE;IAClC,IAAA,4BAAqB,EAAC,OAAO,CAAC,CAAC;IAC/B,CAAC,CAAC,SAAS,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAM,CAAC,OAAO,CAAC,EAAE,OAAO,CAAC,CAAC;AACpD,CAAC,CAAC,CAAC"}
+{"version":3,"file":"actions-util.test.js","sourceRoot":"","sources":["../src/actions-util.test.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,wDAA0C;AAC1C,8CAAuB;AAEvB,iDAAgF;AAChF,6CAAmD;AACnD,+CAAuC;AACvC,mDAA6C;AAC7C,iCAA+C;AAE/C,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,SAAS,iBAAiB,CAAI,WAAgB,EAAE,MAAe;IAC7D,MAAM,eAAe,GAAG,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC;IAC/C,MAAM,CAAC,OAAO,CAAC,OAAO,GAAG,WAAW,CAAC;IACrC,IAAI,CAAC;QACH,OAAO,MAAM,EAAE,CAAC;IAClB,CAAC;YAAS,CAAC;QACT,MAAM,CAAC,OAAO,CAAC,OAAO,GAAG,eAAe,CAAC;IAC3C,CAAC;AACH,CAAC;AAED,SAAS,aAAa,CACpB,OAA2C,EAC3C,MAAe;IAEf,MAAM,WAAW,GAAG,EAAE,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC;IAEvC,4BAA4B;IAC5B,KAAK,MAAM,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,CAAC;QACnD,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;YACxB,OAAO,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;QAC1B,CAAC;aAAM,CAAC;YACN,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC;QAC3B,CAAC;IACH,CAAC;IAED,IAAI,CAAC;QACH,OAAO,MAAM,EAAE,CAAC;IAClB,CAAC;YAAS,CAAC;QACT,+BAA+B;QAC/B,OAAO,CAAC,GAAG,GAAG,WAAW,CAAC;IAC5B,CAAC;AACH,CAAC;AAED,IAAA,aAAI,EAAC,uBAAuB,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACxC,IAAI,kBAAkB,GAAG,IAAA,gCAAmB,EAC1C,+CAA+C,EAC/C,2CAA2C,CAC5C,CAAC;IACF,CAAC,CAAC,SAAS,CACT,kBAAkB,EAClB,6EAA6E,CAC9E,CAAC;IAEF,gCAAgC;IAChC,kBAAkB,GAAG,IAAA,gCAAmB,EACtC,+CAA+C,EAC/C,2CAA2C,CAC5C,CAAC;IACF,CAAC,CAAC,SAAS,CACT,kBAAkB,EAClB,6EAA6E,CAC9E,CAAC;IAEF,6DAA6D;IAC7D,kBAAkB,GAAG,IAAA,gCAAmB,EACtC,+CAA+C,EAC/C,IAAI,CACL,CAAC;IACF,CAAC,CAAC,SAAS,CACT,kBAAkB,EAClB,gDAAgD,CACjD,CAAC;IAEF,sCAAsC;IACtC,kBAAkB,GAAG,IAAA,gCAAmB,EACtC,+CAA+C,EAC/C,qDAAqD,CACtD,CAAC;IACF,CAAC,CAAC,SAAS,CACT,kBAAkB,EAClB,gEAAgE,CACjE,CAAC;IAEF,8BAA8B;IAC9B,kBAAkB,GAAG,IAAA,gCAAmB,EACtC,+CAA+C,EAC/C,SAAS,CACV,CAAC;IACF,CAAC,CAAC,SAAS,CACT,kBAAkB,EAClB,gDAAgD,CACjD,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,oDAAoD,EAAE,CAAC,CAAC,EAAE,EAAE;IAC/D,iBAAiB,CACf;QACE,YAAY,EAAE;YACZ,MAAM,EAAE,GAAG;YACX,IAAI,EAAE,EAAE,GAAG,EAAE,MAAM,EAAE;YACrB,IAAI,EAAE,EAAE,KAAK,EAAE,qBAAqB,EAAE;SACvC;KACF,EACD,GAAG,EAAE;QACH,CAAC,CAAC,SAAS,CAAC,IAAA,qCAAsB,GAAE,EAAE;YACpC,IAAI,EAAE,MAAM;YACZ,IAAI,EAAE,qBAAqB;SAC5B,CAAC,CAAC;QACH,CAAC,CAAC,EAAE,CAAC,IAAA,qCAAsB,GAAE,EAAE,IAAI,CAAC,CAAC;IACvC,CAAC,CACF,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,8DAA8D,EAAE,CAAC,CAAC,EAAE,EAAE;IACzE,iBAAiB,CACf;QACE,IAAI,EAAE;YACJ,GAAG,EAAE,iBAAiB;SACvB;KACF,EACD,GAAG,EAAE;QACH,CAAC,CAAC,EAAE,CAAC,IAAA,qCAAsB,GAAE,EAAE,SAAS,CAAC,CAAC;QAC1C,CAAC,CAAC,EAAE,CAAC,IAAA,qCAAsB,GAAE,EAAE,KAAK,CAAC,CAAC;IACxC,CAAC,CACF,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,mEAAmE,EAAE,CAAC,CAAC,EAAE,EAAE;IAC9E,iBAAiB,CAAC,EAAE,EAAE,GAAG,EAAE;QACzB,aAAa,CACX;YACE,iBAAiB,EAAE,2BAA2B;YAC9C,yBAAyB,EAAE,MAAM;SAClC,EACD,GAAG,EAAE;YACH,CAAC,CAAC,SAAS,CAAC,IAAA,qCAAsB,GAAE,EAAE;gBACpC,IAAI,EAAE,MAAM;gBACZ,IAAI,EAAE,2BAA2B;aAClC,CAAC,CAAC;YACH,CAAC,CAAC,EAAE,CAAC,IAAA,qCAAsB,GAAE,EAAE,IAAI,CAAC,CAAC;QACvC,CAAC,CACF,CAAC;IACJ,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,+EAA+E,EAAE,CAAC,CAAC,EAAE,EAAE;IAC1F,iBAAiB,CAAC,EAAE,EAAE,GAAG,EAAE;QACzB,aAAa,CACX;YACE,iBAAiB,EAAE,2BAA2B;YAC9C,yBAAyB,EAAE,SAAS;SACrC,EACD,GAAG,EAAE;YACH,CAAC,CAAC,EAAE,CAAC,IAAA,qCAAsB,GAAE,EAAE,SAAS,CAAC,CAAC;YAC1C,CAAC,CAAC,EAAE,CAAC,IAAA,qCAAsB,GAAE,EAAE,KAAK,CAAC,CAAC;QACxC,CAAC,CACF,CAAC;IACJ,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,uFAAuF,EAAE,CAAC,CAAC,EAAE,EAAE;IAClG,iBAAiB,CAAC,EAAE,EAAE,GAAG,EAAE;QACzB,aAAa,CACX;YACE,iBAAiB,EAAE,SAAS;YAC5B,yBAAyB,EAAE,MAAM;SAClC,EACD,GAAG,EAAE;YACH,CAAC,CAAC,EAAE,CAAC,IAAA,qCAAsB,GAAE,EAAE,SAAS,CAAC,CAAC;YAC1C,CAAC,CAAC,EAAE,CAAC,IAAA,qCAAsB,GAAE,EAAE,KAAK,CAAC,CAAC;QACxC,CAAC,CACF,CAAC;IACJ,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,+DAA+D,EAAE,CAAC,CAAC,EAAE,EAAE;IAC1E,iBAAiB,CAAC,EAAE,EAAE,GAAG,EAAE;QACzB,aAAa,CACX;YACE,iBAAiB,EAAE,SAAS;YAC5B,yBAAyB,EAAE,SAAS;SACrC,EACD,GAAG,EAAE;YACH,CAAC,CAAC,EAAE,CAAC,IAAA,qCAAsB,GAAE,EAAE,SAAS,CAAC,CAAC;YAC1C,CAAC,CAAC,EAAE,CAAC,IAAA,qCAAsB,GAAE,EAAE,KAAK,CAAC,CAAC;QACxC,CAAC,CACF,CAAC;IACJ,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,uBAAuB,EAAE,CAAC,CAAC,EAAE,EAAE;IAClC,IAAA,4BAAqB,EAAC,OAAO,CAAC,CAAC;IAC/B,CAAC,CAAC,SAAS,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAM,CAAC,OAAO,CAAC,EAAE,OAAO,CAAC,CAAC;AACpD,CAAC,CAAC,CAAC"}
@@ -68,6 +68,7 @@ const util = __importStar(require("./util"));
        };
        sinon.stub(configUtils, "getConfig").resolves({
            gitHubVersion,
+            augmentationProperties: {},
            languages: [],
            packs: [],
            trapCaches: {},
@@ -1 +1 @@
-{"version":3,"file":"analyze-action-env.test.js","sourceRoot":"","sources":["../src/analyze-action-env.test.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,8CAAuB;AACvB,6CAA+B;AAE/B,4DAA8C;AAC9C,mDAAqC;AACrC,kDAAoC;AACpC,4DAA8C;AAC9C,sDAAwC;AACxC,8DAAgD;AAChD,mDAIyB;AACzB,6CAA+B;AAE/B,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,4EAA4E;AAC5E,4EAA4E;AAC5E,+EAA+E;AAC/E,+EAA+E;AAC/E,gFAAgF;AAChF,iCAAiC;AAEjC,IAAA,aAAI,EAAC,8DAA8D,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAC/E,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QACrC,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,IAAI,CAAC,iBAAiB,CAAC;QAC1D,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,sCAAsC,CAAC;QAC1E,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,wBAAwB,CAAC;QACzD,KAAK;aACF,IAAI,CAAC,YAAY,EAAE,wBAAwB,CAAC;aAC5C,QAAQ,CAAC,EAAmC,CAAC,CAAC;QACjD,KAAK,CAAC,IAAI,CAAC,YAAY,EAAE,kBAAkB,CAAC,CAAC,QAAQ,EAAE,CAAC;QACxD,KAAK,CAAC,IAAI,CAAC,QAAQ,EAAE,0BAA0B,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;QAEhE,MAAM,aAAa,GAAuB;YACxC,IAAI,EAAE,IAAI,CAAC,aAAa,CAAC,MAAM;SAChC,CAAC;QACF,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC,QAAQ,CAAC;YAC5C,aAAa;YACb,SAAS,EAAE,EAAE;YACb,KAAK,EAAE,EAAE;YACT,UAAU,EAAE,EAAE;SACkB,CAAC,CAAC;QACpC,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC;QACtE,iBAAiB,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;QAC1D,iBAAiB,CAAC,QAAQ,CAAC,iBAAiB,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC/D,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC;QACtE,iBAAiB,CAAC,QAAQ,CAAC,eAAe,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;QAC5D,iBAAiB,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC5D,KAAK,CAAC,IAAI,CAAC,GAAG,EAAE,kBAAkB,CAAC,CAAC,QAAQ,CAAC,aAAa,CAAC,CAAC;QAC5D,IAAA,gCAAgB,EAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACjC,IAAA,0CAA0B,EAAC,GAAG,EAAE,EAAE,CAAC,CAAC;QAEpC,uEAAuE;QACvE,0EAA0E;QAC1E,iBAAiB;QACjB,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,IAAI,CAAC;QACrC,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,GAAG,MAAM,CAAC;QAEnC,MAAM,eAAe,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,aAAa,CAAC,CAAC;QAC3D,MAAM,cAAc,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QACzD,iEAAiE;QACjE,MAAM,aAAa,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAAC;QAElD,uEAAuE;QACvE,oEAAoE;QACpE,4EAA4E;QAC5E,wEAAwE;QACxE,MAAM,aAAa,CAAC,UAAU,CAAC;QAE/B,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;QAC/D,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC;QAC7D,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;QAC9D,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC;IAC9D,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}
+{"version":3,"file":"analyze-action-env.test.js","sourceRoot":"","sources":["../src/analyze-action-env.test.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,8CAAuB;AACvB,6CAA+B;AAE/B,4DAA8C;AAC9C,mDAAqC;AACrC,kDAAoC;AACpC,4DAA8C;AAC9C,sDAAwC;AACxC,8DAAgD;AAChD,mDAIyB;AACzB,6CAA+B;AAE/B,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,4EAA4E;AAC5E,4EAA4E;AAC5E,+EAA+E;AAC/E,+EAA+E;AAC/E,gFAAgF;AAChF,iCAAiC;AAEjC,IAAA,aAAI,EAAC,8DAA8D,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAC/E,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QACrC,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,IAAI,CAAC,iBAAiB,CAAC;QAC1D,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,sCAAsC,CAAC;QAC1E,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,wBAAwB,CAAC;QACzD,KAAK;aACF,IAAI,CAAC,YAAY,EAAE,wBAAwB,CAAC;aAC5C,QAAQ,CAAC,EAAmC,CAAC,CAAC;QACjD,KAAK,CAAC,IAAI,CAAC,YAAY,EAAE,kBAAkB,CAAC,CAAC,QAAQ,EAAE,CAAC;QACxD,KAAK,CAAC,IAAI,CAAC,QAAQ,EAAE,0BAA0B,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;QAEhE,MAAM,aAAa,GAAuB;YACxC,IAAI,EAAE,IAAI,CAAC,aAAa,CAAC,MAAM;SAChC,CAAC;QACF,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC,QAAQ,CAAC;YAC5C,aAAa;YACb,sBAAsB,EAAE,EAAE;YAC1B,SAAS,EAAE,EAAE;YACb,KAAK,EAAE,EAAE;YACT,UAAU,EAAE,EAAE;SACkB,CAAC,CAAC;QACpC,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC;QACtE,iBAAiB,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;QAC1D,iBAAiB,CAAC,QAAQ,CAAC,iBAAiB,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC/D,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC;QACtE,iBAAiB,CAAC,QAAQ,CAAC,eAAe,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;QAC5D,iBAAiB,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC5D,KAAK,CAAC,IAAI,CAAC,GAAG,EAAE,kBAAkB,CAAC,CAAC,QAAQ,CAAC,aAAa,CAAC,CAAC;QAC5D,IAAA,gCAAgB,EAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACjC,IAAA,0CAA0B,EAAC,GAAG,EAAE,EAAE,CAAC,CAAC;QAEpC,uEAAuE;QACvE,0EAA0E;QAC1E,iBAAiB;QACjB,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,IAAI,CAAC;QACrC,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,GAAG,MAAM,CAAC;QAEnC,MAAM,eAAe,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,aAAa,CAAC,CAAC;QAC3D,MAAM,cAAc,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QACzD,iEAAiE;QACjE,MAAM,aAAa,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAAC;QAElD,uEAAuE;QACvE,oEAAoE;QACpE,4EAA4E;QAC5E,wEAAwE;QACxE,MAAM,aAAa,CAAC,UAAU,CAAC;QAE/B,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;QAC/D,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC;QAC7D,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;QAC9D,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC;IAC9D,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}
@@ -67,6 +67,7 @@ const util = __importStar(require("./util"));
        };
        sinon.stub(configUtils, "getConfig").resolves({
            gitHubVersion,
+            augmentationProperties: {},
            languages: [],
            packs: [],
            trapCaches: {},
@@ -1 +1 @@
-{"version":3,"file":"analyze-action-input.test.js","sourceRoot":"","sources":["../src/analyze-action-input.test.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,8CAAuB;AACvB,6CAA+B;AAE/B,4DAA8C;AAC9C,mDAAqC;AACrC,kDAAoC;AACpC,4DAA8C;AAC9C,sDAAwC;AACxC,8DAAgD;AAChD,mDAIyB;AACzB,6CAA+B;AAE/B,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,4EAA4E;AAC5E,4EAA4E;AAC5E,+EAA+E;AAC/E,+EAA+E;AAC/E,gFAAgF;AAChF,iCAAiC;AAEjC,IAAA,aAAI,EAAC,sDAAsD,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACvE,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QACrC,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,IAAI,CAAC,iBAAiB,CAAC;QAC1D,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,sCAAsC,CAAC;QAC1E,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,wBAAwB,CAAC;QACzD,KAAK;aACF,IAAI,CAAC,YAAY,EAAE,wBAAwB,CAAC;aAC5C,QAAQ,CAAC,EAAmC,CAAC,CAAC;QACjD,KAAK,CAAC,IAAI,CAAC,YAAY,EAAE,kBAAkB,CAAC,CAAC,QAAQ,EAAE,CAAC;QACxD,MAAM,aAAa,GAAuB;YACxC,IAAI,EAAE,IAAI,CAAC,aAAa,CAAC,MAAM;SAChC,CAAC;QACF,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC,QAAQ,CAAC;YAC5C,aAAa;YACb,SAAS,EAAE,EAAE;YACb,KAAK,EAAE,EAAE;YACT,UAAU,EAAE,EAAE;SACkB,CAAC,CAAC;QACpC,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC;QACtE,iBAAiB,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;QAC1D,iBAAiB,CAAC,QAAQ,CAAC,iBAAiB,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC/D,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC;QACtE,iBAAiB,CAAC,QAAQ,CAAC,eAAe,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;QAC5D,iBAAiB,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC5D,KAAK,CAAC,IAAI,CAAC,GAAG,EAAE,kBAAkB,CAAC,CAAC,QAAQ,CAAC,aAAa,CAAC,CAAC;QAC5D,KAAK,CAAC,IAAI,CAAC,QAAQ,EAAE,0BAA0B,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;QAChE,IAAA,gCAAgB,EAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACjC,IAAA,0CAA0B,EAAC,GAAG,EAAE,EAAE,CAAC,CAAC;QAEpC,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,GAAG,CAAC;QACpC,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,GAAG,MAAM,CAAC;QAEnC,4DAA4D;QAC5D,iBAAiB,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;QACpD,iBAAiB,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;QAElD,MAAM,eAAe,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,aAAa,CAAC,CAAC;QAC3D,MAAM,cAAc,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QACzD,iEAAiE;QACjE,MAAM,aAAa,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAAC;QAElD,uEAAuE;QACvE,oEAAoE;QACpE,4EAA4E;QAC5E,wEAAwE;QACxE,MAAM,aAAa,CAAC,UAAU,CAAC;QAE/B,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;QAC/D,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC;QAC7D,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;QAC9D,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC;IAC9D,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}
+{"version":3,"file":"analyze-action-input.test.js","sourceRoot":"","sources":["../src/analyze-action-input.test.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,8CAAuB;AACvB,6CAA+B;AAE/B,4DAA8C;AAC9C,mDAAqC;AACrC,kDAAoC;AACpC,4DAA8C;AAC9C,sDAAwC;AACxC,8DAAgD;AAChD,mDAIyB;AACzB,6CAA+B;AAE/B,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,4EAA4E;AAC5E,4EAA4E;AAC5E,+EAA+E;AAC/E,+EAA+E;AAC/E,gFAAgF;AAChF,iCAAiC;AAEjC,IAAA,aAAI,EAAC,sDAAsD,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACvE,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QACrC,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,IAAI,CAAC,iBAAiB,CAAC;QAC1D,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,sCAAsC,CAAC;QAC1E,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,wBAAwB,CAAC;QACzD,KAAK;aACF,IAAI,CAAC,YAAY,EAAE,wBAAwB,CAAC;aAC5C,QAAQ,CAAC,EAAmC,CAAC,CAAC;QACjD,KAAK,CAAC,IAAI,CAAC,YAAY,EAAE,kBAAkB,CAAC,CAAC,QAAQ,EAAE,CAAC;QACxD,MAAM,aAAa,GAAuB;YACxC,IAAI,EAAE,IAAI,CAAC,aAAa,CAAC,MAAM;SAChC,CAAC;QACF,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC,QAAQ,CAAC;YAC5C,aAAa;YACb,sBAAsB,EAAE,EAAE;YAC1B,SAAS,EAAE,EAAE;YACb,KAAK,EAAE,EAAE;YACT,UAAU,EAAE,EAAE;SACkB,CAAC,CAAC;QACpC,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC;QACtE,iBAAiB,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;QAC1D,iBAAiB,CAAC,QAAQ,CAAC,iBAAiB,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC/D,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC;QACtE,iBAAiB,CAAC,QAAQ,CAAC,eAAe,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;QAC5D,iBAAiB,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC5D,KAAK,CAAC,IAAI,CAAC,GAAG,EAAE,kBAAkB,CAAC,CAAC,QAAQ,CAAC,aAAa,CAAC,CAAC;QAC5D,KAAK,CAAC,IAAI,CAAC,QAAQ,EAAE,0BAA0B,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;QAChE,IAAA,gCAAgB,EAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACjC,IAAA,0CAA0B,EAAC,GAAG,EAAE,EAAE,CAAC,CAAC;QAEpC,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,GAAG,CAAC;QACpC,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,GAAG,MAAM,CAAC;QAEnC,4DAA4D;QAC5D,iBAAiB,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;QACpD,iBAAiB,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;QAElD,MAAM,eAAe,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,aAAa,CAAC,CAAC;QAC3D,MAAM,cAAc,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QACzD,iEAAiE;QACjE,MAAM,aAAa,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAAC;QAElD,uEAAuE;QACvE,oEAAoE;QACpE,4EAA4E;QAC5E,wEAAwE;QACxE,MAAM,aAAa,CAAC,UAAU,CAAC;QAE/B,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;QAC/D,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC;QAC7D,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;QAC9D,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC;IAC9D,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}
@@ -55,6 +55,7 @@ const environment_1 = require("./environment");
 const feature_flags_1 = require("./feature-flags");
 const languages_1 = require("./languages");
 const logging_1 = require("./logging");
+const overlay_database_utils_1 = require("./overlay-database-utils");
 const repository_1 = require("./repository");
 const statusReport = __importStar(require("./status-report"));
 const status_report_1 = require("./status-report");
@@ -201,7 +202,14 @@ async function run() {
        await (0, analyze_1.warnIfGoInstalledAfterInit)(config, logger);
        await runAutobuildIfLegacyGoWorkflow(config, logger);
        dbCreationTimings = await (0, analyze_1.runFinalize)(outputDir, threads, memory, codeql, config, logger);
-        const cleanupLevel = actionsUtil.getOptionalInput("cleanup-level") || "brutal";
+        // An overlay-base database should always use the 'overlay' cleanup level
+        // to preserve the cached intermediate results.
+        //
+        // Note that we may be overriding the 'cleanup-level' input parameter.
+        const cleanupLevel = config.augmentationProperties.overlayDatabaseMode ===
+            overlay_database_utils_1.OverlayDatabaseMode.OverlayBase
+            ? "overlay"
+            : actionsUtil.getOptionalInput("cleanup-level") || "brutal";
        if (actionsUtil.getRequiredInput("skip-queries") !== "true") {
            runStats = await (0, analyze_1.runQueries)(outputDir, memory, util.getAddSnippetsFlag(actionsUtil.getRequiredInput("add-snippets")), threads, cleanupLevel, diffRangePackDir, actionsUtil.getOptionalInput("category"), config, logger, features);
        }
@@ -228,6 +236,8 @@ async function run() {
        }
        // Possibly upload the database bundles for remote queries
        await (0, database_upload_1.uploadDatabases)(repositoryNwo, config, apiDetails, logger);
+        // Possibly upload the overlay-base database to actions cache
+        await (0, overlay_database_utils_1.uploadOverlayBaseDatabaseToCache)(codeql, config, logger);
        // Possibly upload the TRAP caches for later re-use
        const trapCacheUploadStartTime = perf_hooks_1.performance.now();
        didUploadTrapCaches = await (0, trap_caching_1.uploadTrapCaches)(codeql, config, logger);
@@ -1 +1 @@
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@@ -51,7 +51,7 @@ const perf_hooks_1 = require("perf_hooks");
 const io = __importStar(require("@actions/io"));
 const del_1 = __importDefault(require("del"));
 const yaml = __importStar(require("js-yaml"));
-const actionsUtil = __importStar(require("./actions-util"));
+const actions_util_1 = require("./actions-util");
 const api_client_1 = require("./api-client");
 const autobuild_1 = require("./autobuild");
 const codeql_1 = require("./codeql");
@@ -62,6 +62,7 @@ const environment_1 = require("./environment");
 const feature_flags_1 = require("./feature-flags");
 const languages_1 = require("./languages");
 const logging_1 = require("./logging");
+const overlay_database_utils_1 = require("./overlay-database-utils");
 const repository_1 = require("./repository");
 const tracer_config_1 = require("./tracer-config");
 const util = __importStar(require("./util"));
@@ -246,7 +247,7 @@ function getDiffRanges(fileDiff, logger) {
    // uses forward slashes as the path separator, so on Windows we need to
    // replace any backslashes with forward slashes.
    const filename = path
-        .join(actionsUtil.getRequiredInput("checkout_path"), fileDiff.filename)
+        .join((0, actions_util_1.getRequiredInput)("checkout_path"), fileDiff.filename)
        .replaceAll(path.sep, "/");
    if (fileDiff.patch === undefined) {
        if (fileDiff.changes === 0) {
@@ -340,7 +341,7 @@ function writeDiffRangeDataExtensionPack(logger, ranges) {
        // range to a non-empty list that cannot match any alert location.
        ranges = [{ path: "", startLine: 0, endLine: 0 }];
    }
-    const diffRangeDir = path.join(actionsUtil.getTemporaryDirectory(), "pr-diff-range");
+    const diffRangeDir = path.join((0, actions_util_1.getTemporaryDirectory)(), "pr-diff-range");
    // We expect the Actions temporary directory to already exist, so are mainly
    // using `recursive: true` to avoid errors if the directory already exists,
    // for example if the analyze Action is run multiple times in the same job.
@@ -412,6 +413,7 @@ function resolveQuerySuiteAlias(language, maybeSuite) {
 async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag, cleanupLevel, diffRangePackDir, automationDetailsId, config, logger, features) {
    const statusReport = {};
    const queryFlags = [memoryFlag, threadsFlag];
+    const incrementalMode = [];
    if (cleanupLevel !== "overlay") {
        queryFlags.push("--expect-discarded-cache");
    }
@@ -419,9 +421,14 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
    if (diffRangePackDir) {
        queryFlags.push(`--additional-packs=${diffRangePackDir}`);
        queryFlags.push("--extension-packs=codeql-action/pr-diff-range");
+        incrementalMode.push("diff-informed");
    }
-    const sarifRunPropertyFlag = diffRangePackDir
-        ? "--sarif-run-property=incrementalMode=diff-informed"
+    if (config.augmentationProperties.overlayDatabaseMode ===
+        overlay_database_utils_1.OverlayDatabaseMode.Overlay) {
+        incrementalMode.push("overlay");
+    }
+    const sarifRunPropertyFlag = incrementalMode.length > 0
+        ? `--sarif-run-property=incrementalMode=${incrementalMode.join(",")}`
        : undefined;
    const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
    for (const language of config.languages) {
@@ -1 +1 @@
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truncated
@@ -254,7 +254,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
        async supportsFeature(feature) {
            return (0, tools_features_1.isSupportedToolsFeature)(await this.getVersion(), feature);
        },
-        async databaseInitCluster(config, sourceRoot, processName, qlconfigFile, overlayDatabaseMode, logger) {
+        async databaseInitCluster(config, sourceRoot, processName, qlconfigFile, logger) {
            const extraArgs = config.languages.map((language) => `--language=${language}`);
            if (await (0, tracer_config_1.shouldEnableIndirectTracing)(codeql, config)) {
                extraArgs.push("--begin-tracing");
@@ -276,6 +276,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
            const overwriteFlag = (0, tools_features_1.isSupportedToolsFeature)(await this.getVersion(), tools_features_1.ToolsFeature.ForceOverwrite)
                ? "--force-overwrite"
                : "--overwrite";
+            const overlayDatabaseMode = config.augmentationProperties.overlayDatabaseMode;
            if (overlayDatabaseMode === overlay_database_utils_1.OverlayDatabaseMode.Overlay) {
                const overlayChangesFile = await (0, overlay_database_utils_1.writeOverlayChangesFile)(config, sourceRoot, logger);
                extraArgs.push(`--overlay-changes=${overlayChangesFile}`);
@@ -1 +1 @@
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+{"version":3,"file":"codeql.js","sourceRoot":"","sources":["../src/codeql.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AA6UA,kCAqEC;AAKD,8BAKC;AAyBD,8BAyDC;AAQD,0CAMC;AAOD,kDAIC;AAUD,0CAslBC;AAqDD,0CAeC;AAmGD,8EASC;AAED,4FAYC;AAOD,gFAEC;AA9yCD,uCAAyB;AACzB,2CAA6B;AAE7B,oDAAsC;AACtC,yEAA2D;AAC3D,8CAAgC;AAEhC,iDAKwB;AAExB,6CAAmE;AAEnE,uCAAmC;AACnC,+CAAuC;AACvC,mDAIyB;AACzB,2CAAuD;AAGvD,qEAIkC;AAClC,4DAA8C;AAG9C,qDAAyE;AACzE,mDAA8D;AAC9D,6CAA+B;AAC/B,iCAAiE;AA4OjE;;;GAGG;AACH,IAAI,YAAY,GAAuB,SAAS,CAAC;AAEjD;;;;;;;GAOG;AACH,MAAM,sBAAsB,GAAG,QAAQ,CAAC;AAExC;;GAEG;AACH,MAAM,2BAA2B,GAAG,QAAQ,CAAC;AAE7C;;GAEG;AACH,MAAM,qCAAqC,GAAG,MAAM,CAAC;AAErD;;GAEG;AACH,MAAM,iCAAiC,GAAG,YAAY,CAAC;AAEvD,mEAAmE;AACnE,MAAM,+BAA+B,GAAG,YAAY,CAAC;AAErD;;;;;;GAMG;AAEH;;GAEG;AACH,MAAM,4BAA4B,GAAG,QAAQ,CAAC;AAE9C;;;;;;;;;;;;GAYG;AACI,KAAK,UAAU,WAAW,CAC/B,UAA8B,EAC9B,UAAgC,EAChC,OAAe,EACf,OAA2B,EAC3B,iBAA2C,EAC3C,MAAc,EACd,QAA2B,EAC3B,YAAqB;IAQrB,IAAI,CAAC;QACH,MAAM,EACJ,YAAY,EACZ,yBAAyB,EACzB,WAAW,EACX,YAAY,EACZ,gBAAgB,GACjB,GAAG,MAAM,WAAW,CAAC,iBAAiB,CACrC,UAAU,EACV,UAAU,EACV,OAAO,EACP,OAAO,EACP,QAAQ,EACR,iBAAiB,EACjB,MAAM,CACP,CAAC;QAEF,MAAM,CAAC,KAAK,CACV,kCAAkC,IAAI,CAAC,SAAS,CAC9C,yBAAyB,CAC1B,EAAE,CACJ,CAAC;QAEF,IAAI,SAAS,GAAG,IAAI,CAAC,IAAI,CAAC,YAAY,EAAE,QAAQ,EAAE,QAAQ,CAAC,CAAC;QAC5D,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,EAAE,CAAC;YACjC,SAAS,IAAI,MAAM,CAAC;QACtB,CAAC;aAAM,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,IAAI,OAAO,CAAC,QAAQ,KAAK,QAAQ,EAAE,CAAC;YACzE,MAAM,IAAI,IAAI,CAAC,kBAAkB,CAC/B,yBAAyB,OAAO,CAAC,QAAQ,EAAE,CAC5C,CAAC;QACJ,CAAC;QAED,YAAY,GAAG,MAAM,eAAe,CAAC,SAAS,EAAE,YAAY,CAAC,CAAC;QAC9D,OAAO;YACL,MAAM,EAAE,YAAY;YACpB,yBAAyB;YACzB,WAAW;YACX,YAAY;YACZ,gBAAgB;SACjB,CAAC;IACJ,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,MAAM,UAAU,GACd,CAAC,YAAY,IAAI,CAAC,kBAAkB;YACpC,CAAC,CAAC,YAAY,KAAK,IAAI,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC,CAAC,oBAAoB;YACvE,CAAC,CAAC,IAAI,CAAC,kBAAkB;YACzB,CAAC,CAAC,KAAK,CAAC;QAEZ,MAAM,IAAI,UAAU,CAClB,8CAA8C,IAAA,sBAAe,EAAC,CAAC,CAAC,GAC9D,CAAC,YAAY,KAAK,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,gBAAgB,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,EAC9D,EAAE,CACH,CAAC;IACJ,CAAC;AACH,CAAC;AAED;;GAEG;AACI,KAAK,UAAU,SAAS,CAAC,GAAW;IACzC,IAAI,YAAY,KAAK,SAAS,EAAE,CAAC;QAC/B,YAAY,GAAG,MAAM,eAAe,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;IAClD,CAAC;IACD,OAAO,YAAY,CAAC;AACtB,CAAC;AAED,SAAS,eAAe,CACtB,aAA8B,EAC9B,UAAkB,EAClB,qBAAyB;IAEzB,IAAI,OAAO,aAAa,CAAC,UAAU,CAAC,KAAK,UAAU,EAAE,CAAC;QACpD,IAAI,qBAAqB,KAAK,SAAS,EAAE,CAAC;YACxC,OAAO,qBAAqB,CAAC;QAC/B,CAAC;QACD,MAAM,WAAW,GAAG,GAAG,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,UAAU,UAAU,+BAA+B,CAAC,CAAC;QACvE,CAAC,CAAC;QACF,OAAO,WAAgB,CAAC;IAC1B,CAAC;IACD,OAAO,aAAa,CAAC,UAAU,CAAM,CAAC;AACxC,CAAC;AAED;;;;;GAKG;AACH,SAAgB,SAAS,CAAC,aAA8B;IACtD,YAAY,GAAG;QACb,OAAO,EAAE,eAAe,CAAC,aAAa,EAAE,SAAS,EAAE,GAAG,EAAE,CAAC,iBAAiB,CAAC;QAC3E,UAAU,EAAE,eAAe,CAAC,aAAa,EAAE,YAAY,EAAE,KAAK,IAAI,EAAE,CAAC,CAAC;YACpE,OAAO,EAAE,OAAO;SACjB,CAAC,CAAC;QACH,YAAY,EAAE,eAAe,CAAC,aAAa,EAAE,cAAc,CAAC;QAC5D,eAAe,EAAE,eAAe,CAC9B,aAAa,EACb,iBAAiB,EACjB,KAAK,EAAE,OAAO,EAAE,EAAE,CAChB,CAAC,CAAC,aAAa,CAAC,UAAU;YAC1B,IAAA,wCAAuB,EAAC,MAAM,aAAa,CAAC,UAAU,EAAE,EAAE,OAAO,CAAC,CACrE;QACD,mBAAmB,EAAE,eAAe,CAAC,aAAa,EAAE,qBAAqB,CAAC;QAC1E,YAAY,EAAE,eAAe,CAAC,aAAa,EAAE,cAAc,CAAC;QAC5D,sBAAsB,EAAE,eAAe,CACrC,aAAa,EACb,wBAAwB,CACzB;QACD,qBAAqB,EAAE,eAAe,CACpC,aAAa,EACb,uBAAuB,CACxB;QACD,gBAAgB,EAAE,eAAe,CAAC,aAAa,EAAE,kBAAkB,CAAC;QACpE,gBAAgB,EAAE,eAAe,CAAC,aAAa,EAAE,kBAAkB,CAAC;QACpE,sBAAsB,EAAE,eAAe,CACrC,aAAa,EACb,wBAAwB,EACxB,KAAK,IAAI,EAAE,CAAC,CAAC,EAAE,OAAO,EAAE,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE,CAAC,CAC9C;QACD,cAAc,EAAE,eAAe,CAAC,aAAa,EAAE,gBAAgB,CAAC;QAChE,uBAAuB,EAAE,eAAe,CACtC,aAAa,EACb,yBAAyB,CAC1B;QACD,YAAY,EAAE,eAAe,CAAC,aAAa,EAAE,cAAc,CAAC;QAC5D,eAAe,EAAE,eAAe,CAAC,aAAa,EAAE,iBAAiB,CAAC;QAClE,cAAc,EAAE,eAAe,CAAC,aAAa,EAAE,gBAAgB,CAAC;QAChE,kBAAkB,EAAE,eAAe,CAAC,aAAa,EAAE,oBAAoB,CAAC;QACxE,wBAAwB,EAAE,eAAe,CACvC,aAAa,EACb,0BAA0B,CAC3B;QACD,qBAAqB,EAAE,eAAe,CACpC,aAAa,EACb,uBAAuB,CACxB;QACD,yBAAyB,EAAE,eAAe,CACxC,aAAa,EACb,2BAA2B,CAC5B;QACD,iBAAiB,EAAE,eAAe,CAAC,aAAa,EAAE,mBAAmB,CAAC;QACtE,gBAAgB,EAAE,eAAe,CAAC,aAAa,EAAE,kBAAkB,CAAC;QACpE,YAAY,EAAE,eAAe,CAAC,aAAa,EAAE,cAAc,CAAC;KAC7D,CAAC;IACF,OAAO,YAAY,CAAC;AACtB,CAAC;AAED;;;;;GAKG;AACH,SAAgB,eAAe;IAC7B,IAAI,YAAY,KAAK,SAAS,EAAE,CAAC;QAC/B,yEAAyE;QACzE,MAAM,IAAI,KAAK,CAAC,wBAAwB,CAAC,CAAC;IAC5C,CAAC;IACD,OAAO,YAAY,CAAC;AACtB,CAAC;AAED;;;;GAIG;AACI,KAAK,UAAU,mBAAmB,CACvC,GAAG,GAAG,oBAAoB;IAE1B,OAAO,eAAe,CAAC,GAAG,EAAE,KAAK,CAAC,CAAC;AACrC,CAAC;AAED;;;;;;;GAOG;AACI,KAAK,UAAU,eAAe,CACnC,GAAW,EACX,YAAqB;IAErB,MAAM,MAAM,GAAW;QACrB,OAAO;YACL,OAAO,GAAG,CAAC;QACb,CAAC;QACD,KAAK,CAAC,UAAU;YACd,IAAI,MAAM,GAAG,IAAI,CAAC,sBAAsB,EAAE,CAAC;YAC3C,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;gBACzB,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,GAAG,EAAE,CAAC,SAAS,EAAE,eAAe,CAAC,EAAE;oBAC7D,cAAc,EAAE,IAAI;iBACrB,CAAC,CAAC;gBACH,IAAI,CAAC;oBACH,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,CAAgB,CAAC;gBAC7C,CAAC;gBAAC,MAAM,CAAC;oBACP,MAAM,KAAK,CACT,uDAAuD,MAAM,EAAE,CAChE,CAAC;gBACJ,CAAC;gBACD,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAC;YAClC,CAAC;YACD,OAAO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truncated
@@ -54,7 +54,6 @@ const defaults = __importStar(require("./defaults.json"));
 const doc_url_1 = require("./doc-url");
 const languages_1 = require("./languages");
 const logging_1 = require("./logging");
-const overlay_database_utils_1 = require("./overlay-database-utils");
 const setup_codeql_1 = require("./setup-codeql");
 const testing_utils_1 = require("./testing-utils");
 const tools_features_1 = require("./tools-features");
@@ -337,7 +336,7 @@ const injectedConfigMacro = ava_1.default.macro({
                tempDir,
                augmentationProperties,
            };
-            await codeqlObject.databaseInitCluster(thisStubConfig, "", undefined, undefined, overlay_database_utils_1.OverlayDatabaseMode.None, (0, logging_1.getRunnerLogger)(true));
+            await codeqlObject.databaseInitCluster(thisStubConfig, "", undefined, undefined, (0, logging_1.getRunnerLogger)(true));
            const args = runnerConstructorStub.firstCall.args[1];
            // should have used an config file
            const configArg = args.find((arg) => arg.startsWith("--codescanning-config="));
@@ -470,7 +469,7 @@ const injectedConfigMacro = ava_1.default.macro({
        const runnerConstructorStub = stubToolRunnerConstructor();
        const codeqlObject = await codeql.getCodeQLForTesting();
        sinon.stub(codeqlObject, "getVersion").resolves((0, testing_utils_1.makeVersionInfo)("2.17.6"));
-        await codeqlObject.databaseInitCluster({ ...stubConfig, tempDir }, "", undefined, "/path/to/qlconfig.yml", overlay_database_utils_1.OverlayDatabaseMode.None, (0, logging_1.getRunnerLogger)(true));
+        await codeqlObject.databaseInitCluster({ ...stubConfig, tempDir }, "", undefined, "/path/to/qlconfig.yml", (0, logging_1.getRunnerLogger)(true));
        const args = runnerConstructorStub.firstCall.args[1];
        // should have used a config file
        const hasCodeScanningConfigArg = args.some((arg) => arg.startsWith("--codescanning-config="));
@@ -486,7 +485,7 @@ const injectedConfigMacro = ava_1.default.macro({
        const codeqlObject = await codeql.getCodeQLForTesting();
        sinon.stub(codeqlObject, "getVersion").resolves((0, testing_utils_1.makeVersionInfo)("2.17.6"));
        await codeqlObject.databaseInitCluster({ ...stubConfig, tempDir }, "", undefined, undefined, // undefined qlconfigFile
-        overlay_database_utils_1.OverlayDatabaseMode.None, (0, logging_1.getRunnerLogger)(true));
+        (0, logging_1.getRunnerLogger)(true));
        const args = runnerConstructorStub.firstCall.args[1];
        const hasQlconfigArg = args.some((arg) => arg.startsWith("--qlconfig-file="));
        t.false(hasQlconfigArg, "should NOT have injected a qlconfig");
@@ -637,7 +636,7 @@ for (const { codeqlVersion, flagPassed, githubVersion, negativeFlagPassed, } of
    sinon.stub(io, "which").resolves("");
    process.env["CODEQL_ACTION_EXTRA_OPTIONS"] =
        '{ "database": { "init": ["--overwrite"] } }';
-    await codeqlObject.databaseInitCluster(stubConfig, "sourceRoot", undefined, undefined, overlay_database_utils_1.OverlayDatabaseMode.None, (0, logging_1.getRunnerLogger)(false));
+    await codeqlObject.databaseInitCluster(stubConfig, "sourceRoot", undefined, undefined, (0, logging_1.getRunnerLogger)(false));
    t.true(runnerConstructorStub.calledOnce);
    const args = runnerConstructorStub.firstCall.args[1];
    t.is(args.filter((option) => option === "--overwrite").length, 1, "--overwrite should only be passed once");
@@ -1 +1 @@
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truncated
+{"version":3,"file":"codeql.test.js","sourceRoot":"","sources":["../src/codeql.test.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAogCA,8DAqBC;AAzhCD,uCAAyB;AAGzB,yEAA2D;AAC3D,gDAAkC;AAClC,+DAAiD;AACjD,8CAA6C;AAC7C,8CAAsB;AACtB,8CAAgC;AAChC,gDAAwB;AACxB,6CAA+B;AAE/B,4DAA8C;AAE9C,6CAAwC;AACxC,iDAAmC;AACnC,iDAIwB;AACxB,0DAA4C;AAC5C,uCAAmC;AAEnC,2CAAuC;AACvC,uCAA4C;AAC5C,iDAA6C;AAC7C,mDASyB;AAEzB,qDAAgD;AAChD,6CAA+B;AAC/B,iCAA+C;AAE/C,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,IAAI,UAAkB,CAAC;AAEvB,MAAM,WAAW,GAAsB,IAAA,8BAAc,EAAC,EAAE,CAAC,CAAC;AAE1D,aAAI,CAAC,UAAU,CAAC,GAAG,EAAE;IACnB,IAAA,4BAAqB,EAAC,OAAO,CAAC,CAAC;IAE/B,UAAU,GAAG,IAAA,gCAAgB,EAAC;QAC5B,SAAS,EAAE,CAAC,oBAAQ,CAAC,GAAG,CAAC;KAC1B,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,KAAK,UAAU,oBAAoB,CAAC,EAClC,UAAU,GAAG,yCAAyB,EACtC,UAAU,EACV,QAAQ,EACR,OAAO,EACP,MAAM,GAOP;IACC,MAAM,GAAG,GAAG,IAAA,qCAAqB,EAAC,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAC,CAAC;IACrE,MAAM,MAAM,CAAC,WAAW,CACtB,UAAU,KAAK,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,GAAG,EAC1C,UAAU,EACV,MAAM,EACN,IAAI,CAAC,aAAa,CAAC,IAAI,EACvB,UAAU,KAAK,SAAS;QACtB,CAAC,CAAC,EAAE,UAAU,EAAE,OAAO,EAAE;QACzB,CAAC,CAAC,0CAA0B,EAC9B,IAAA,yBAAe,EAAC,IAAI,CAAC,EACrB,WAAW,EACX,KAAK,CACN,CAAC;AACJ,CAAC;AAED,SAAS,cAAc,CAAC,EACtB,UAAU,GAAG,yCAAyB,EACtC,UAAU,EACV,OAAO,GAKR;IACC,OAAO,IAAA,cAAI,EAAC,UAAU,CAAC,MAAO,CAAC;SAC5B,GAAG,CAAC,6CAA6C,OAAO,EAAE,CAAC;SAC3D,KAAK,CAAC,GAAG,EAAE;QACV,MAAM,EAAE,UAAU,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;YAChC,IAAI;SACL,CAAC,CAAC;QACH,QAAQ,EAAE,OAAO;KAClB,CAAC,CAAC;AACP,CAAC;AAED,SAAS,cAAc,CAAC,UAA4B;IAClD,6FAA6F;IAC7F,oFAAoF;IACpF,gFAAgF;IAChF,kDAAkD;IAClD,KAAK;SACF,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC;SACrC,QAAQ,CAAC,OAAO,CAAC;SACjB,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;IAC5B,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,UAAU,CAAC,GAAG,CAAC;IAClD,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,UAAU,CAAC,MAAM,IAAI,EAAE,CAAC;AAC1D,CAAC;AAED,IAAA,aAAI,EAAC,gFAAgF,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACjG,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QACrC,IAAA,gCAAgB,EAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QAEjC,MAAM,QAAQ,GAAG,CAAC,UAAU,EAAE,UAAU,CAAC,CAAC;QAE1C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YACzC,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;YAE5B,MAAM,GAAG,GAAG,IAAA,qCAAqB,EAAC;gBAChC,OAAO,EAAE,iBAAiB,OAAO,EAAE;gBACnC,QAAQ,EAAE,KAAK;aAChB,CAAC,CAAC;YACH,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,WAAW,CACrC,GAAG,EACH,yCAAyB,EACzB,MAAM,EACN,IAAI,CAAC,aAAa,CAAC,MAAM,EACzB,0CAA0B,EAC1B,IAAA,yBAAe,EAAC,IAAI,CAAC,EACrB,WAAW,EACX,KAAK,CACN,CAAC;YAEF,CAAC,CAAC,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,EAAE,SAAS,OAAO,EAAE,CAAC,CAAC,CAAC;YACvD,CAAC,CAAC,EAAE,CAAC,MAAM,CAAC,YAAY,EAAE,SAAS,OAAO,EAAE,CAAC,CAAC;YAC9C,CAAC,CAAC,EAAE,CAAC,MAAM,CAAC,WAAW,EAAE,0BAAW,CAAC,QAAQ,CAAC,CAAC;QACjD,CAAC;QAED,CAAC,CAAC,EAAE,CAAC,SAAS,CAAC,eAAe,CAAC,QAAQ,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;IACtD,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,2EAA2E,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAC5F,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QACrC,IAAA,gCAAgB,EAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACjC,MAAM,GAAG,GAAG,IAAA,qCAAqB,EAAC;YAChC,OAAO,EAAE,uBAAuB;YAChC,QAAQ,EAAE,KAAK;SAChB,CAAC,CAAC;QACH,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,WAAW,CACrC,GAAG,EACH,yCAAyB,EACzB,MAAM,EACN,IAAI,CAAC,aAAa,CAAC,MAAM,EACzB,0CAA0B,EAC1B,IAAA,yBAAe,EAAC,IAAI,CAAC,EACrB,WAAW,EACX,KAAK,CACN,CAAC;QAEF,CAAC,CAAC,EAAE,CAAC,SAAS,CAAC,eAAe,CAAC,QAAQ,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;QACpD,CAAC,CAAC,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC,CAAC;QAC7C,CAAC,CAAC,EAAE,CAAC,MAAM,CAAC,YAAY,EAAE,QAAQ,CAAC,CAAC;QACpC,CAAC,CAAC,EAAE,CAAC,MAAM,CAAC,WAAW,EAAE,0BAAW,CAAC,QAAQ,CAAC,CAAC;QAC/C,IAAI,MAAM,CAAC,yBAAyB,EAAE,CAAC;YACrC,sBAAsB,CAAC,CAAC,EAAE,MAAM,CAAC,yBAAyB,CAAC,CAAC;QAC9D,CAAC;IACH,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,gFAAgF,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACjG,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QACrC,IAAA,gCAAgB,EAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QAEjC,MAAM,oBAAoB,CAAC;YACzB,OAAO,EAAE,wBAAwB;YACjC,QAAQ,EAAE,IAAI;YACd,MAAM;SACP,CAAC,CAAC;QAEH,MAAM,GAAG,GAAG,IAAA,qCAAqB,EAAC;YAChC,OAAO,EAAE,wBAAwB;SAClC,CAAC,CAAC;QACH,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,WAAW,CACrC,GAAG,EACH,yCAAyB,EACzB,MAAM,EACN,IAAI,CAAC,aAAa,CAAC,MAAM,EACzB,0CAA0B,EAC1B,IAAA,yBAAe,EAAC,IAAI,CAAC,EACrB,WAAW,EACX,KAAK,CACN,CAAC;QACF,CAAC,CAAC,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,EAAE,gBAAgB,CAAC,CAAC,CAAC;QACrD,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,YAAY,EAAE,gBAAgB,CAAC,CAAC;QACnD,CAAC,CAAC,EAAE,CAAC,MAAM,CAAC,WAAW,EAAE,0BAAW,CAAC,QAAQ,CAAC,CAAC;QAC/C,IAAI,MAAM,CAAC,yBAAyB,EAAE,CAAC;YACrC,sBAAsB,CAAC,CAAC,EAAE,MAAM,CAAC,yBAAyB,CAAC,CAAC;QAC9D,CAAC;IACH,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,MAAM,sCAAsC,GAAG;IAC7C;QACE,OAAO,EAAE,sBAAsB;QAC/B,wBAAwB,EAAE,QAAQ;KACnC;IACD;QACE,OAAO,EAAE,wBAAwB;QACjC,wBAAwB,EAAE,gBAAgB;KAC3C;CACF,CAAC;AAEF,KAAK,MAAM,EACT,OAAO,EACP,wBAAwB,GACzB,IAAI,sCAAsC,EAAE,CAAC;IAC5C,IAAA,aAAI,EAAC,sCAAsC,OAAO,OAAO,wBAAwB,EAAE,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;QAC/F,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;YACrC,IAAA,gCAAgB,EAAC,MAAM,EAAE,Line truncated
@@ -47,6 +47,7 @@ exports.getLanguages = getLanguages;
 exports.getRawLanguages = getRawLanguages;
 exports.getDefaultConfig = getDefaultConfig;
 exports.calculateAugmentation = calculateAugmentation;
+exports.getOverlayDatabaseMode = getOverlayDatabaseMode;
 exports.parsePacksFromInput = parsePacksFromInput;
 exports.parsePacksSpecification = parsePacksSpecification;
 exports.validatePackSpecification = validatePackSpecification;
@@ -62,11 +63,14 @@ const path = __importStar(require("path"));
 const perf_hooks_1 = require("perf_hooks");
 const yaml = __importStar(require("js-yaml"));
 const semver = __importStar(require("semver"));
+const actions_util_1 = require("./actions-util");
 const api = __importStar(require("./api-client"));
 const caching_utils_1 = require("./caching-utils");
 const diff_informed_analysis_utils_1 = require("./diff-informed-analysis-utils");
 const feature_flags_1 = require("./feature-flags");
+const git_utils_1 = require("./git-utils");
 const languages_1 = require("./languages");
+const overlay_database_utils_1 = require("./overlay-database-utils");
 const trap_caching_1 = require("./trap-caching");
 const util_1 = require("./util");
 // Property names from the user-supplied config file.
@@ -82,6 +86,8 @@ exports.defaultAugmentationProperties = {
    queriesInput: undefined,
    qualityQueriesInput: undefined,
    extraQueryExclusions: [],
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
 };
 function getPacksStrInvalid(packStr, configFile) {
    return configFile
@@ -227,10 +233,10 @@ async function getRawLanguages(languagesInput, repository, logger) {
 /**
 * Get the default config for when the user has not supplied one.
 */
-async function getDefaultConfig({ languagesInput, queriesInput, qualityQueriesInput, packsInput, buildModeInput, dbLocation, trapCachingEnabled, dependencyCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeql, githubVersion, features, logger, }) {
+async function getDefaultConfig({ languagesInput, queriesInput, qualityQueriesInput, packsInput, buildModeInput, dbLocation, trapCachingEnabled, dependencyCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeql, sourceRoot, githubVersion, features, logger, }) {
    const languages = await getLanguages(codeql, languagesInput, repository, logger);
    const buildMode = await parseBuildModeInput(buildModeInput, languages, features, logger);
-    const augmentationProperties = await calculateAugmentation(codeql, features, packsInput, queriesInput, qualityQueriesInput, languages, logger);
+    const augmentationProperties = await calculateAugmentation(codeql, repository, features, packsInput, queriesInput, qualityQueriesInput, languages, sourceRoot, buildMode, logger);
    const { trapCaches, trapCacheDownloadTime } = await downloadCacheWithTime(trapCachingEnabled, codeql, languages, logger);
    return {
        languages,
@@ -262,7 +268,7 @@ async function downloadCacheWithTime(trapCachingEnabled, codeQL, languages, logg
 /**
 * Load the config from the given file.
 */
-async function loadConfig({ languagesInput, queriesInput, qualityQueriesInput, packsInput, buildModeInput, configFile, dbLocation, trapCachingEnabled, dependencyCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeql, workspacePath, githubVersion, apiDetails, features, logger, }) {
+async function loadConfig({ languagesInput, queriesInput, qualityQueriesInput, packsInput, buildModeInput, configFile, dbLocation, trapCachingEnabled, dependencyCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeql, workspacePath, sourceRoot, githubVersion, apiDetails, features, logger, }) {
    let parsedYAML;
    if (isLocal(configFile)) {
        if (configFile !== userConfigFromActionPath(tempDir)) {
@@ -280,7 +286,7 @@ async function loadConfig({ languagesInput, queriesInput, qualityQueriesInput, p
    }
    const languages = await getLanguages(codeql, languagesInput, repository, logger);
    const buildMode = await parseBuildModeInput(buildModeInput, languages, features, logger);
-    const augmentationProperties = await calculateAugmentation(codeql, features, packsInput, queriesInput, qualityQueriesInput, languages, logger);
+    const augmentationProperties = await calculateAugmentation(codeql, repository, features, packsInput, queriesInput, qualityQueriesInput, languages, sourceRoot, buildMode, logger);
    const { trapCaches, trapCacheDownloadTime } = await downloadCacheWithTime(trapCachingEnabled, codeql, languages, logger);
    return {
        languages,
@@ -307,12 +313,15 @@ async function loadConfig({ languagesInput, queriesInput, qualityQueriesInput, p
 * the config file sent to the CLI.
 *
 * @param codeql The CodeQL object.
+ * @param repository The repository to analyze.
 * @param features The feature enablement object.
 * @param rawPacksInput The packs input from the action configuration.
 * @param rawQueriesInput The queries input from the action configuration.
 * @param languages The languages that the config file is for. If the packs input
 *    is non-empty, then there must be exactly one language. Otherwise, an
 *    error is thrown.
+ * @param sourceRoot The source root of the repository.
+ * @param buildMode The build mode to use.
 * @param logger The logger to use for logging.
 *
 * @returns The properties that need to be augmented in the config file.
@@ -321,11 +330,14 @@ async function loadConfig({ languagesInput, queriesInput, qualityQueriesInput, p
 *     not have exactly one language.
 */
 // exported for testing.
-async function calculateAugmentation(codeql, features, rawPacksInput, rawQueriesInput, rawQualityQueriesInput, languages, logger) {
+async function calculateAugmentation(codeql, repository, features, rawPacksInput, rawQueriesInput, rawQualityQueriesInput, languages, sourceRoot, buildMode, logger) {
    const packsInputCombines = shouldCombine(rawPacksInput);
    const packsInput = parsePacksFromInput(rawPacksInput, languages, packsInputCombines);
    const queriesInputCombines = shouldCombine(rawQueriesInput);
    const queriesInput = parseQueriesFromInput(rawQueriesInput, queriesInputCombines);
+    const { overlayDatabaseMode, useOverlayDatabaseCaching } = await getOverlayDatabaseMode(codeql, repository, features, languages, sourceRoot, buildMode, logger);
+    logger.info(`Using overlay database mode: ${overlayDatabaseMode} ` +
+        `${useOverlayDatabaseCaching ? "with" : "without"} caching.`);
    const qualityQueriesInput = parseQueriesFromInput(rawQualityQueriesInput, false);
    const extraQueryExclusions = [];
    if (await (0, diff_informed_analysis_utils_1.shouldPerformDiffInformedAnalysis)(codeql, features, logger)) {
@@ -340,6 +352,8 @@ async function calculateAugmentation(codeql, features, rawPacksInput, rawQueries
        queriesInputCombines,
        qualityQueriesInput,
        extraQueryExclusions,
+        overlayDatabaseMode,
+        useOverlayDatabaseCaching,
    };
 }
 function parseQueriesFromInput(rawQueriesInput, queriesInputCombines) {
@@ -354,6 +368,88 @@ function parseQueriesFromInput(rawQueriesInput, queriesInputCombines) {
    }
    return trimmedInput.split(",").map((query) => ({ uses: query.trim() }));
 }
+/**
+ * Calculate and validate the overlay database mode and caching to use.
+ *
+ * - If the environment variable `CODEQL_OVERLAY_DATABASE_MODE` is set, use it.
+ *   In this case, the workflow is responsible for managing database storage and
+ *   retrieval, and the action will not perform overlay database caching. Think
+ *   of it as a "manual control" mode where the calling workflow is responsible
+ *   for making sure that everything is set up correctly.
+ * - Otherwise, if `Feature.OverlayAnalysis` is enabled, calculate the mode
+ *   based on what we are analyzing. Think of it as a "automatic control" mode
+ *   where the action will do the right thing by itself.
+ *   - If we are analyzing a pull request, use `Overlay` with caching.
+ *   - If we are analyzing the default branch, use `OverlayBase` with caching.
+ * - Otherwise, use `None`.
+ *
+ * For `Overlay` and `OverlayBase`, the function performs further checks and
+ * reverts to `None` if any check should fail.
+ *
+ * @returns An object containing the overlay database mode and whether the
+ * action should perform overlay-base database caching.
+ */
+async function getOverlayDatabaseMode(codeql, repository, features, languages, sourceRoot, buildMode, logger) {
+    let overlayDatabaseMode = overlay_database_utils_1.OverlayDatabaseMode.None;
+    let useOverlayDatabaseCaching = false;
+    const modeEnv = process.env.CODEQL_OVERLAY_DATABASE_MODE;
+    // Any unrecognized CODEQL_OVERLAY_DATABASE_MODE value will be ignored and
+    // treated as if the environment variable was not set.
+    if (modeEnv === overlay_database_utils_1.OverlayDatabaseMode.Overlay ||
+        modeEnv === overlay_database_utils_1.OverlayDatabaseMode.OverlayBase ||
+        modeEnv === overlay_database_utils_1.OverlayDatabaseMode.None) {
+        overlayDatabaseMode = modeEnv;
+        logger.info(`Setting overlay database mode to ${overlayDatabaseMode} ` +
+            "from the CODEQL_OVERLAY_DATABASE_MODE environment variable.");
+    }
+    else if (
+    // TODO: Remove the repository owner check once support for overlay analysis
+    // stabilizes, and no more backward-incompatible changes are expected.
+    ["github", "dsp-testing"].includes(repository.owner) &&
+        (await features.getValue(feature_flags_1.Feature.OverlayAnalysis, codeql))) {
+        if ((0, actions_util_1.isAnalyzingPullRequest)()) {
+            overlayDatabaseMode = overlay_database_utils_1.OverlayDatabaseMode.Overlay;
+            useOverlayDatabaseCaching = true;
+            logger.info(`Setting overlay database mode to ${overlayDatabaseMode} ` +
+                "with caching because we are analyzing a pull request.");
+        }
+        else if (await (0, git_utils_1.isAnalyzingDefaultBranch)()) {
+            overlayDatabaseMode = overlay_database_utils_1.OverlayDatabaseMode.OverlayBase;
+            useOverlayDatabaseCaching = true;
+            logger.info(`Setting overlay database mode to ${overlayDatabaseMode} ` +
+                "with caching because we are analyzing the default branch.");
+        }
+    }
+    const nonOverlayAnalysis = {
+        overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.None,
+        useOverlayDatabaseCaching: false,
+    };
+    if (overlayDatabaseMode === overlay_database_utils_1.OverlayDatabaseMode.None) {
+        return nonOverlayAnalysis;
+    }
+    if (buildMode !== util_1.BuildMode.None && languages.some(languages_1.isTracedLanguage)) {
+        logger.warning(`Cannot build an ${overlayDatabaseMode} database because ` +
+            `build-mode is set to "${buildMode}" instead of "none". ` +
+            "Falling back to creating a normal full database instead.");
+        return nonOverlayAnalysis;
+    }
+    if (!(await (0, util_1.codeQlVersionAtLeast)(codeql, overlay_database_utils_1.CODEQL_OVERLAY_MINIMUM_VERSION))) {
+        logger.warning(`Cannot build an ${overlayDatabaseMode} database because ` +
+            `the CodeQL CLI is older than ${overlay_database_utils_1.CODEQL_OVERLAY_MINIMUM_VERSION}. ` +
+            "Falling back to creating a normal full database instead.");
+        return nonOverlayAnalysis;
+    }
+    if ((await (0, git_utils_1.getGitRoot)(sourceRoot)) === undefined) {
+        logger.warning(`Cannot build an ${overlayDatabaseMode} database because ` +
+            `the source root "${sourceRoot}" is not inside a git repository. ` +
+            "Falling back to creating a normal full database instead.");
+        return nonOverlayAnalysis;
+    }
+    return {
+        overlayDatabaseMode,
+        useOverlayDatabaseCaching,
+    };
+}
 /**
 * Pack names must be in the form of `scope/name`, with only alpha-numeric characters,
 * and `-` allowed as long as not the first or last char.
@@ -1 +1 @@
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truncated
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Line truncated
@@ -42,13 +42,16 @@ const github = __importStar(require("@actions/github"));
 const ava_1 = __importDefault(require("ava"));
 const yaml = __importStar(require("js-yaml"));
 const sinon = __importStar(require("sinon"));
+const actionsUtil = __importStar(require("./actions-util"));
 const api = __importStar(require("./api-client"));
 const caching_utils_1 = require("./caching-utils");
 const codeql_1 = require("./codeql");
 const configUtils = __importStar(require("./config-utils"));
 const feature_flags_1 = require("./feature-flags");
+const gitUtils = __importStar(require("./git-utils"));
 const languages_1 = require("./languages");
 const logging_1 = require("./logging");
+const overlay_database_utils_1 = require("./overlay-database-utils");
 const repository_1 = require("./repository");
 const testing_utils_1 = require("./testing-utils");
 const util_1 = require("./util");
@@ -73,6 +76,7 @@ function createTestInitConfigInputs(overrides) {
        tempDir: "",
        codeql: {},
        workspacePath: "",
+        sourceRoot: "",
        githubVersion,
        apiDetails: {
            auth: "token",
@@ -625,7 +629,9 @@ const packSpecPrettyPrintingMacro = ava_1.default.macro({
 const mockLogger = (0, logging_1.getRunnerLogger)(true);
 const calculateAugmentationMacro = ava_1.default.macro({
    exec: async (t, _title, rawPacksInput, rawQueriesInput, rawQualityQueriesInput, languages, expectedAugmentationProperties) => {
-        const actualAugmentationProperties = await configUtils.calculateAugmentation((0, codeql_1.getCachedCodeQL)(), (0, testing_utils_1.createFeatures)([]), rawPacksInput, rawQueriesInput, rawQualityQueriesInput, languages, mockLogger);
+        const actualAugmentationProperties = await configUtils.calculateAugmentation((0, codeql_1.getCachedCodeQL)(), { owner: "github", repo: "repo" }, (0, testing_utils_1.createFeatures)([]), rawPacksInput, rawQueriesInput, rawQualityQueriesInput, languages, "", // sourceRoot
+        undefined, // buildMode
+        mockLogger);
        t.deepEqual(actualAugmentationProperties, expectedAugmentationProperties);
    },
    title: (_, title) => `Calculate Augmentation: ${title}`,
@@ -672,7 +678,9 @@ const calculateAugmentationMacro = ava_1.default.macro({
 });
 const calculateAugmentationErrorMacro = ava_1.default.macro({
    exec: async (t, _title, rawPacksInput, rawQueriesInput, rawQualityQueriesInput, languages, expectedError) => {
-        await t.throwsAsync(() => configUtils.calculateAugmentation((0, codeql_1.getCachedCodeQL)(), (0, testing_utils_1.createFeatures)([]), rawPacksInput, rawQueriesInput, rawQualityQueriesInput, languages, mockLogger), { message: expectedError });
+        await t.throwsAsync(() => configUtils.calculateAugmentation((0, codeql_1.getCachedCodeQL)(), { owner: "github", repo: "repo" }, (0, testing_utils_1.createFeatures)([]), rawPacksInput, rawQueriesInput, rawQualityQueriesInput, languages, "", // sourceRoot
+        undefined, // buildMode
+        mockLogger), { message: expectedError });
    },
    title: (_, title) => `Calculate Augmentation Error: ${title}`,
 });
@@ -824,4 +832,182 @@ for (const { displayName, language, feature } of [
        ]);
    });
 }
+const defaultOverlayDatabaseModeTestSetup = {
+    overlayDatabaseEnvVar: undefined,
+    isFeatureEnabled: false,
+    isPullRequest: false,
+    isDefaultBranch: false,
+    repositoryOwner: "github",
+    buildMode: util_1.BuildMode.None,
+    languages: [languages_1.Language.javascript],
+    codeqlVersion: "2.21.0",
+    gitRoot: "/some/git/root",
+};
+const getOverlayDatabaseModeMacro = ava_1.default.macro({
+    exec: async (t, _title, setupOverrides, expected) => {
+        return await (0, util_1.withTmpDir)(async (tempDir) => {
+            const messages = [];
+            const logger = (0, testing_utils_1.getRecordingLogger)(messages);
+            // Save the original environment
+            const originalEnv = { ...process.env };
+            try {
+                const setup = {
+                    ...defaultOverlayDatabaseModeTestSetup,
+                    ...setupOverrides,
+                };
+                // Set up environment variable if specified
+                delete process.env.CODEQL_OVERLAY_DATABASE_MODE;
+                if (setup.overlayDatabaseEnvVar !== undefined) {
+                    process.env.CODEQL_OVERLAY_DATABASE_MODE =
+                        setup.overlayDatabaseEnvVar;
+                }
+                // Mock feature flags
+                const features = (0, testing_utils_1.createFeatures)(setup.isFeatureEnabled ? [feature_flags_1.Feature.OverlayAnalysis] : []);
+                // Mock isAnalyzingPullRequest function
+                sinon
+                    .stub(actionsUtil, "isAnalyzingPullRequest")
+                    .returns(setup.isPullRequest);
+                // Mock repository owner
+                const repository = {
+                    owner: setup.repositoryOwner,
+                    repo: "test-repo",
+                };
+                // Set up CodeQL mock
+                const codeql = (0, testing_utils_1.mockCodeQLVersion)(setup.codeqlVersion);
+                // Mock git root detection
+                if (setup.gitRoot !== undefined) {
+                    sinon.stub(gitUtils, "getGitRoot").resolves(setup.gitRoot);
+                }
+                // Mock default branch detection
+                sinon
+                    .stub(gitUtils, "isAnalyzingDefaultBranch")
+                    .resolves(setup.isDefaultBranch);
+                const result = await configUtils.getOverlayDatabaseMode(codeql, repository, features, setup.languages, tempDir, // sourceRoot
+                setup.buildMode, logger);
+                t.deepEqual(result, expected);
+            }
+            finally {
+                // Restore the original environment
+                process.env = originalEnv;
+            }
+        });
+    },
+    title: (_, title) => `getOverlayDatabaseMode: ${title}`,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Environment variable override - Overlay", {
+    overlayDatabaseEnvVar: "overlay",
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.Overlay,
+    useOverlayDatabaseCaching: false,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Environment variable override - OverlayBase", {
+    overlayDatabaseEnvVar: "overlay-base",
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.OverlayBase,
+    useOverlayDatabaseCaching: false,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Environment variable override - None", {
+    overlayDatabaseEnvVar: "none",
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Ignore invalid environment variable", {
+    overlayDatabaseEnvVar: "invalid-mode",
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Ignore feature flag when analyzing non-default branch", {
+    isFeatureEnabled: true,
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Overlay-base database on default branch when feature enabled", {
+    isFeatureEnabled: true,
+    isDefaultBranch: true,
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.OverlayBase,
+    useOverlayDatabaseCaching: true,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "No overlay-base database on default branch when feature disabled", {
+    isDefaultBranch: true,
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Overlay analysis on PR when feature enabled", {
+    isFeatureEnabled: true,
+    isPullRequest: true,
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.Overlay,
+    useOverlayDatabaseCaching: true,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "No overlay analysis on PR when feature disabled", {
+    isPullRequest: true,
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Overlay PR analysis by env for dsp-testing", {
+    overlayDatabaseEnvVar: "overlay",
+    repositoryOwner: "dsp-testing",
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.Overlay,
+    useOverlayDatabaseCaching: false,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Overlay PR analysis by env for other-org", {
+    overlayDatabaseEnvVar: "overlay",
+    repositoryOwner: "other-org",
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.Overlay,
+    useOverlayDatabaseCaching: false,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Overlay PR analysis by feature flag for dsp-testing", {
+    isFeatureEnabled: true,
+    isPullRequest: true,
+    repositoryOwner: "dsp-testing",
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.Overlay,
+    useOverlayDatabaseCaching: true,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "No overlay PR analysis by feature flag for other-org", {
+    isFeatureEnabled: true,
+    isPullRequest: true,
+    repositoryOwner: "other-org",
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Fallback due to autobuild with traced language", {
+    overlayDatabaseEnvVar: "overlay",
+    buildMode: util_1.BuildMode.Autobuild,
+    languages: [languages_1.Language.java],
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Fallback due to no build mode with traced language", {
+    overlayDatabaseEnvVar: "overlay",
+    buildMode: undefined,
+    languages: [languages_1.Language.java],
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Fallback due to old CodeQL version", {
+    overlayDatabaseEnvVar: "overlay",
+    codeqlVersion: "2.14.0",
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+});
+(0, ava_1.default)(getOverlayDatabaseModeMacro, "Fallback due to missing git root", {
+    overlayDatabaseEnvVar: "overlay",
+    gitRoot: undefined,
+}, {
+    overlayDatabaseMode: overlay_database_utils_1.OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+});
 //# sourceMappingURL=config-utils.test.js.map
@@ -1 +1 @@
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@@ -39,34 +39,8 @@ exports.writeDiffRangesJsonFile = writeDiffRangesJsonFile;
 exports.readDiffRangesJsonFile = readDiffRangesJsonFile;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
-const github = __importStar(require("@actions/github"));
 const actionsUtil = __importStar(require("./actions-util"));
 const feature_flags_1 = require("./feature-flags");
-function getPullRequestBranches() {
-    const pullRequest = github.context.payload.pull_request;
-    if (pullRequest) {
-        return {
-            base: pullRequest.base.ref,
-            // We use the head label instead of the head ref here, because the head
-            // ref lacks owner information and by itself does not uniquely identify
-            // the head branch (which may be in a forked repository).
-            head: pullRequest.head.label,
-        };
-    }
-    // PR analysis under Default Setup does not have the pull_request context,
-    // but it should set CODE_SCANNING_REF and CODE_SCANNING_BASE_BRANCH.
-    const codeScanningRef = process.env.CODE_SCANNING_REF;
-    const codeScanningBaseBranch = process.env.CODE_SCANNING_BASE_BRANCH;
-    if (codeScanningRef && codeScanningBaseBranch) {
-        return {
-            base: codeScanningBaseBranch,
-            // PR analysis under Default Setup analyzes the PR head commit instead of
-            // the merge commit, so we can use the provided ref directly.
-            head: codeScanningRef,
-        };
-    }
-    return undefined;
-}
 /**
 * Check if the action should perform diff-informed analysis.
 */
@@ -85,7 +59,7 @@ async function getDiffInformedAnalysisBranches(codeql, features, logger) {
    if (!(await features.getValue(feature_flags_1.Feature.DiffInformedQueries, codeql))) {
        return undefined;
    }
-    const branches = getPullRequestBranches();
+    const branches = actionsUtil.getPullRequestBranches();
    if (!branches) {
        logger.info("Not performing diff-informed analysis " +
            "because we are not analyzing a pull request.");
@@ -1 +1 @@
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@@ -39,6 +39,7 @@ const path = __importStar(require("path"));
 const semver = __importStar(require("semver"));
 const api_client_1 = require("./api-client");
 const defaults = __importStar(require("./defaults.json"));
+const overlay_database_utils_1 = require("./overlay-database-utils");
 const tools_features_1 = require("./tools-features");
 const util = __importStar(require("./util"));
 const DEFAULT_VERSION_FEATURE_FLAG_PREFIX = "default_codeql_version_";
@@ -61,11 +62,13 @@ var Feature;
    Feature["CppBuildModeNone"] = "cpp_build_mode_none";
    Feature["CppDependencyInstallation"] = "cpp_dependency_installation_enabled";
    Feature["DiffInformedQueries"] = "diff_informed_queries";
+    Feature["DisableCombineSarifFiles"] = "disable_combine_sarif_files";
    Feature["DisableCsharpBuildless"] = "disable_csharp_buildless";
    Feature["DisableJavaBuildlessEnabled"] = "disable_java_buildless_enabled";
    Feature["DisableKotlinAnalysisEnabled"] = "disable_kotlin_analysis_enabled";
    Feature["ExportDiagnosticsEnabled"] = "export_diagnostics_enabled";
    Feature["ExtractToToolcache"] = "extract_to_toolcache";
+    Feature["OverlayAnalysis"] = "overlay_analysis";
    Feature["PythonDefaultIsToNotExtractStdlib"] = "python_default_is_to_not_extract_stdlib";
    Feature["QaTelemetryEnabled"] = "qa_telemetry_enabled";
    Feature["RustAnalysis"] = "rust_analysis";
@@ -98,6 +101,11 @@ exports.featureConfig = {
        envVar: "CODEQL_ACTION_DIFF_INFORMED_QUERIES",
        minimumVersion: "2.21.0",
    },
+    [Feature.DisableCombineSarifFiles]: {
+        defaultValue: false,
+        envVar: "CODEQL_ACTION_DISABLE_COMBINE_SARIF_FILES",
+        minimumVersion: undefined,
+    },
    [Feature.DisableCsharpBuildless]: {
        defaultValue: false,
        envVar: "CODEQL_ACTION_DISABLE_CSHARP_BUILDLESS",
@@ -126,6 +134,11 @@ exports.featureConfig = {
        envVar: "CODEQL_ACTION_EXTRACT_TOOLCACHE",
        minimumVersion: undefined,
    },
+    [Feature.OverlayAnalysis]: {
+        defaultValue: false,
+        envVar: "CODEQL_ACTION_OVERLAY_ANALYSIS",
+        minimumVersion: overlay_database_utils_1.CODEQL_OVERLAY_MINIMUM_VERSION,
+    },
    [Feature.PythonDefaultIsToNotExtractStdlib]: {
        defaultValue: false,
        envVar: "CODEQL_ACTION_DISABLE_PYTHON_STANDARD_LIBRARY_EXTRACTION",
@@ -1 +1 @@
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truncated
@@ -167,6 +167,10 @@ async function run() {
    core.exportVariable(environment_1.EnvVar.JOB_RUN_UUID, jobRunUuid);
    core.exportVariable(environment_1.EnvVar.INIT_ACTION_HAS_RUN, "true");
    const configFile = (0, actions_util_1.getOptionalInput)("config-file");
+    // path.resolve() respects the intended semantics of source-root. If
+    // source-root is relative, it is relative to the GITHUB_WORKSPACE. If
+    // source-root is absolute, it is used as given.
+    const sourceRoot = path.resolve((0, util_1.getRequiredEnvParam)("GITHUB_WORKSPACE"), (0, actions_util_1.getOptionalInput)("source-root") || "");
    try {
        const statusReportBase = await (0, status_report_1.createStatusReportBase)(status_report_1.ActionName.Init, "starting", startedAt, config, await (0, util_1.checkDiskUsage)(logger), logger);
        if (statusReportBase !== undefined) {
@@ -211,6 +215,7 @@ async function run() {
            tempDir: (0, actions_util_1.getTemporaryDirectory)(),
            codeql,
            workspacePath: (0, util_1.getRequiredEnvParam)("GITHUB_WORKSPACE"),
+            sourceRoot,
            githubVersion: gitHubVersion,
            apiDetails,
            features,
@@ -228,10 +233,30 @@ async function run() {
        return;
    }
    try {
-        const sourceRoot = path.resolve((0, util_1.getRequiredEnvParam)("GITHUB_WORKSPACE"), (0, actions_util_1.getOptionalInput)("source-root") || "");
-        const overlayDatabaseMode = await (0, init_1.getOverlayDatabaseMode)((await codeql.getVersion()).version, config, sourceRoot, logger);
-        logger.info(`Using overlay database mode: ${overlayDatabaseMode}`);
-        if (overlayDatabaseMode !== overlay_database_utils_1.OverlayDatabaseMode.Overlay) {
+        if (config.augmentationProperties.overlayDatabaseMode ===
+            overlay_database_utils_1.OverlayDatabaseMode.Overlay &&
+            config.augmentationProperties.useOverlayDatabaseCaching) {
+            // OverlayDatabaseMode.Overlay comes in two flavors: with database
+            // caching, or without. The flavor with database caching is intended to be
+            // an "automatic control" mode, which is supposed to be fail-safe. If we
+            // cannot download an overlay-base database, we revert to
+            // OverlayDatabaseMode.None so that the workflow can continue to run.
+            //
+            // The flavor without database caching is intended to be a "manual
+            // control" mode, where the workflow is supposed to make all the
+            // necessary preparations. So, in that mode, we would assume that
+            // everything is in order and let the analysis fail if that turns out not
+            // to be the case.
+            const overlayDatabaseDownloaded = await (0, overlay_database_utils_1.downloadOverlayBaseDatabaseFromCache)(codeql, config, logger);
+            if (!overlayDatabaseDownloaded) {
+                config.augmentationProperties.overlayDatabaseMode =
+                    overlay_database_utils_1.OverlayDatabaseMode.None;
+                logger.info("No overlay-base database found in cache, " +
+                    `reverting overlay database mode to ${overlay_database_utils_1.OverlayDatabaseMode.None}.`);
+            }
+        }
+        if (config.augmentationProperties.overlayDatabaseMode !==
+            overlay_database_utils_1.OverlayDatabaseMode.Overlay) {
            (0, init_1.cleanupDatabaseClusterDirectory)(config, logger);
        }
        if (zstdAvailability) {
@@ -402,7 +427,7 @@ async function run() {
                core.exportVariable("CODEQL_EXTRACTOR_PYTHON_EXTRACT_STDLIB", "true");
            }
        }
-        const tracerConfig = await (0, init_1.runInit)(codeql, config, sourceRoot, "Runner.Worker.exe", (0, actions_util_1.getOptionalInput)("registries"), apiDetails, overlayDatabaseMode, logger);
+        const tracerConfig = await (0, init_1.runInit)(codeql, config, sourceRoot, "Runner.Worker.exe", (0, actions_util_1.getOptionalInput)("registries"), apiDetails, logger);
        if (tracerConfig !== undefined) {
            for (const [key, value] of Object.entries(tracerConfig.env)) {
                core.exportVariable(key, value);
@@ -1 +1 @@
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@@ -35,7 +35,6 @@ var __importStar = (this && this.__importStar) || (function () {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.initCodeQL = initCodeQL;
 exports.initConfig = initConfig;
-exports.getOverlayDatabaseMode = getOverlayDatabaseMode;
 exports.runInit = runInit;
 exports.checkInstallPython311 = checkInstallPython311;
 exports.cleanupDatabaseClusterDirectory = cleanupDatabaseClusterDirectory;
@@ -43,14 +42,11 @@ const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
 const io = __importStar(require("@actions/io"));
-const semver = __importStar(require("semver"));
 const actions_util_1 = require("./actions-util");
 const codeql_1 = require("./codeql");
 const configUtils = __importStar(require("./config-utils"));
-const git_utils_1 = require("./git-utils");
 const languages_1 = require("./languages");
 const logging_1 = require("./logging");
-const overlay_database_utils_1 = require("./overlay-database-utils");
 const tracer_config_1 = require("./tracer-config");
 const util = __importStar(require("./util"));
 async function initCodeQL(toolsInput, apiDetails, tempDir, variant, defaultCliVersion, features, logger) {
@@ -71,33 +67,7 @@ async function initConfig(inputs) {
        return await configUtils.initConfig(inputs);
    });
 }
-async function getOverlayDatabaseMode(codeqlVersion, config, sourceRoot, logger) {
-    const overlayDatabaseMode = process.env.CODEQL_OVERLAY_DATABASE_MODE;
-    if (overlayDatabaseMode === overlay_database_utils_1.OverlayDatabaseMode.Overlay ||
-        overlayDatabaseMode === overlay_database_utils_1.OverlayDatabaseMode.OverlayBase) {
-        if (config.buildMode !== util.BuildMode.None) {
-            logger.warning(`Cannot build an ${overlayDatabaseMode} database because ` +
-                `build-mode is set to "${config.buildMode}" instead of "none". ` +
-                "Falling back to creating a normal full database instead.");
-            return overlay_database_utils_1.OverlayDatabaseMode.None;
-        }
-        if (semver.lt(codeqlVersion, overlay_database_utils_1.CODEQL_OVERLAY_MINIMUM_VERSION)) {
-            logger.warning(`Cannot build an ${overlayDatabaseMode} database because ` +
-                `the CodeQL CLI is older than ${overlay_database_utils_1.CODEQL_OVERLAY_MINIMUM_VERSION}. ` +
-                "Falling back to creating a normal full database instead.");
-            return overlay_database_utils_1.OverlayDatabaseMode.None;
-        }
-        if ((await (0, git_utils_1.getGitRoot)(sourceRoot)) === undefined) {
-            logger.warning(`Cannot build an ${overlayDatabaseMode} database because ` +
-                `the source root "${sourceRoot}" is not inside a git repository. ` +
-                "Falling back to creating a normal full database instead.");
-            return overlay_database_utils_1.OverlayDatabaseMode.None;
-        }
-        return overlayDatabaseMode;
-    }
-    return overlay_database_utils_1.OverlayDatabaseMode.None;
-}
-async function runInit(codeql, config, sourceRoot, processName, registriesInput, apiDetails, overlayDatabaseMode, logger) {
+async function runInit(codeql, config, sourceRoot, processName, registriesInput, apiDetails, logger) {
    fs.mkdirSync(config.dbLocation, { recursive: true });
    const { registriesAuthTokens, qlconfigFile } = await configUtils.generateRegistries(registriesInput, config.tempDir, logger);
    await configUtils.wrapEnvironment({
@@ -105,7 +75,7 @@ async function runInit(codeql, config, sourceRoot, processName, registriesInput,
        CODEQL_REGISTRIES_AUTH: registriesAuthTokens,
    }, 
    // Init a database cluster
-    async () => await codeql.databaseInitCluster(config, sourceRoot, processName, qlconfigFile, overlayDatabaseMode, logger));
+    async () => await codeql.databaseInitCluster(config, sourceRoot, processName, qlconfigFile, logger));
    return await (0, tracer_config_1.getCombinedTracerConfig)(codeql, config);
 }
 /**
@@ -1 +1 @@
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@@ -36,10 +36,15 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.CODEQL_OVERLAY_MINIMUM_VERSION = exports.OverlayDatabaseMode = void 0;
 exports.writeBaseDatabaseOidsFile = writeBaseDatabaseOidsFile;
 exports.writeOverlayChangesFile = writeOverlayChangesFile;
+exports.checkOverlayBaseDatabase = checkOverlayBaseDatabase;
+exports.uploadOverlayBaseDatabaseToCache = uploadOverlayBaseDatabaseToCache;
+exports.downloadOverlayBaseDatabaseFromCache = downloadOverlayBaseDatabaseFromCache;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
+const actionsCache = __importStar(require("@actions/cache"));
 const actions_util_1 = require("./actions-util");
 const git_utils_1 = require("./git-utils");
+const util_1 = require("./util");
 var OverlayDatabaseMode;
 (function (OverlayDatabaseMode) {
    OverlayDatabaseMode["Overlay"] = "overlay";
@@ -126,4 +131,149 @@ function computeChangedFiles(baseFileOids, overlayFileOids) {
    }
    return changes;
 }
+// Constants for database caching
+const CACHE_VERSION = 1;
+const CACHE_PREFIX = "codeql-overlay-base-database";
+const MAX_CACHE_OPERATION_MS = 120_000; // Two minutes
+/**
+ * Checks that the overlay-base database is valid by checking for the
+ * existence of the base database OIDs file.
+ *
+ * @param config The configuration object
+ * @param logger The logger instance
+ * @param warningPrefix Prefix for the check failure warning message
+ * @returns True if the verification succeeded, false otherwise
+ */
+function checkOverlayBaseDatabase(config, logger, warningPrefix) {
+    // An overlay-base database should contain the base database OIDs file.
+    const baseDatabaseOidsFilePath = getBaseDatabaseOidsFilePath(config);
+    if (!fs.existsSync(baseDatabaseOidsFilePath)) {
+        logger.warning(`${warningPrefix}: ${baseDatabaseOidsFilePath} does not exist`);
+        return false;
+    }
+    return true;
+}
+/**
+ * Uploads the overlay-base database to the GitHub Actions cache. If conditions
+ * for uploading are not met, the function does nothing and returns false.
+ *
+ * This function uses the `checkout_path` input to determine the repository path
+ * and works only when called from `analyze` or `upload-sarif`.
+ *
+ * @param codeql The CodeQL instance
+ * @param config The configuration object
+ * @param logger The logger instance
+ * @returns A promise that resolves to true if the upload was performed and
+ * successfully completed, or false otherwise
+ */
+async function uploadOverlayBaseDatabaseToCache(codeql, config, logger) {
+    const overlayDatabaseMode = config.augmentationProperties.overlayDatabaseMode;
+    if (overlayDatabaseMode !== OverlayDatabaseMode.OverlayBase) {
+        logger.debug(`Overlay database mode is ${overlayDatabaseMode}. ` +
+            "Skip uploading overlay-base database to cache.");
+        return false;
+    }
+    if (!config.augmentationProperties.useOverlayDatabaseCaching) {
+        logger.debug("Overlay database caching is disabled. " +
+            "Skip uploading overlay-base database to cache.");
+        return false;
+    }
+    if ((0, util_1.isInTestMode)()) {
+        logger.debug("In test mode. Skip uploading overlay-base database to cache.");
+        return false;
+    }
+    const databaseIsValid = checkOverlayBaseDatabase(config, logger, "Abort uploading overlay-base database to cache");
+    if (!databaseIsValid) {
+        return false;
+    }
+    const dbLocation = config.dbLocation;
+    const codeQlVersion = (await codeql.getVersion()).version;
+    const checkoutPath = (0, actions_util_1.getRequiredInput)("checkout_path");
+    const cacheKey = await generateCacheKey(config, codeQlVersion, checkoutPath);
+    logger.info(`Uploading overlay-base database to Actions cache with key ${cacheKey}`);
+    try {
+        const cacheId = await (0, util_1.withTimeout)(MAX_CACHE_OPERATION_MS, actionsCache.saveCache([dbLocation], cacheKey), () => { });
+        if (cacheId === undefined) {
+            logger.warning("Timed out while uploading overlay-base database");
+            return false;
+        }
+    }
+    catch (error) {
+        logger.warning("Failed to upload overlay-base database to cache: " +
+            `${error instanceof Error ? error.message : String(error)}`);
+        return false;
+    }
+    logger.info(`Successfully uploaded overlay-base database from ${dbLocation}`);
+    return true;
+}
+/**
+ * Downloads the overlay-base database from the GitHub Actions cache. If conditions
+ * for downloading are not met, the function does nothing and returns false.
+ *
+ * @param codeql The CodeQL instance
+ * @param config The configuration object
+ * @param logger The logger instance
+ * @returns A promise that resolves to true if the download was performed and
+ * successfully completed, or false otherwise
+ */
+async function downloadOverlayBaseDatabaseFromCache(codeql, config, logger) {
+    const overlayDatabaseMode = config.augmentationProperties.overlayDatabaseMode;
+    if (overlayDatabaseMode !== OverlayDatabaseMode.Overlay) {
+        logger.debug(`Overlay database mode is ${overlayDatabaseMode}. ` +
+            "Skip downloading overlay-base database from cache.");
+        return false;
+    }
+    if (!config.augmentationProperties.useOverlayDatabaseCaching) {
+        logger.debug("Overlay database caching is disabled. " +
+            "Skip downloading overlay-base database from cache.");
+        return false;
+    }
+    if ((0, util_1.isInTestMode)()) {
+        logger.debug("In test mode. Skip downloading overlay-base database from cache.");
+        return false;
+    }
+    const dbLocation = config.dbLocation;
+    const codeQlVersion = (await codeql.getVersion()).version;
+    const restoreKey = getCacheRestoreKey(config, codeQlVersion);
+    logger.info(`Looking in Actions cache for overlay-base database with restore key ${restoreKey}`);
+    try {
+        const foundKey = await (0, util_1.withTimeout)(MAX_CACHE_OPERATION_MS, actionsCache.restoreCache([dbLocation], restoreKey), () => {
+            logger.info("Timed out downloading overlay-base database from cache");
+        });
+        if (foundKey === undefined) {
+            logger.info("No overlay-base database found in Actions cache");
+            return false;
+        }
+        logger.info(`Downloaded overlay-base database in cache with key ${foundKey}`);
+    }
+    catch (error) {
+        logger.warning("Failed to download overlay-base database from cache: " +
+            `${error instanceof Error ? error.message : String(error)}`);
+        return false;
+    }
+    const databaseIsValid = checkOverlayBaseDatabase(config, logger, "Downloaded overlay-base database is invalid");
+    if (!databaseIsValid) {
+        logger.warning("Downloaded overlay-base database failed validation");
+        return false;
+    }
+    logger.info(`Successfully downloaded overlay-base database to ${dbLocation}`);
+    return true;
+}
+async function generateCacheKey(config, codeQlVersion, checkoutPath) {
+    const sha = await (0, git_utils_1.getCommitOid)(checkoutPath);
+    return `${getCacheRestoreKey(config, codeQlVersion)}${sha}`;
+}
+function getCacheRestoreKey(config, codeQlVersion) {
+    // The restore key (prefix) specifies which cached overlay-base databases are
+    // compatible with the current analysis: the cached database must have the
+    // same cache version and the same CodeQL bundle version.
+    //
+    // Actions cache supports using multiple restore keys to indicate preference.
+    // Technically we prefer a cached overlay-base database with the same SHA as
+    // we are analyzing. However, since overlay-base databases are built from the
+    // default branch and used in PR analysis, it is exceedingly unlikely that
+    // the commit SHA will ever be the same, so we can just leave it out.
+    const languages = [...config.languages].sort().join("_");
+    return `${CACHE_PREFIX}-${CACHE_VERSION}-${languages}-${codeQlVersion}-`;
+}
 //# sourceMappingURL=overlay-database-utils.js.map
@@ -1 +1 @@
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Line truncated
@@ -50,6 +50,14 @@ const LANGUAGE_TO_REGISTRY_TYPE = {
    cpp: "",
    swift: "",
 };
+/**
+ * Checks that `value` is neither `undefined` nor `null`.
+ * @param value The value to test.
+ * @returns Narrows the type of `value` to exclude `undefined` and `null`.
+ */
+function isDefined(value) {
+    return value !== undefined && value !== null;
+}
 // getCredentials returns registry credentials from action inputs.
 // It prefers `registries_credentials` over `registry_secrets`.
 // If neither is set, it returns an empty array.
@@ -81,16 +89,23 @@ function getCredentials(logger, registrySecrets, registriesCredentials, language
        logger.error("Failed to parse the credentials data.");
        throw new util_1.ConfigurationError("Invalid credentials format.");
    }
+    // Check that the parsed data is indeed an array.
+    if (!Array.isArray(parsed)) {
+        throw new util_1.ConfigurationError("Expected credentials data to be an array of configurations, but it is not.");
+    }
    const out = [];
    for (const e of parsed) {
+        if (e === null || typeof e !== "object") {
+            throw new util_1.ConfigurationError("Invalid credentials - must be an object");
+        }
        // Mask credentials to reduce chance of accidental leakage in logs.
-        if (e.password !== undefined) {
+        if (isDefined(e.password)) {
            core.setSecret(e.password);
        }
-        if (e.token !== undefined) {
+        if (isDefined(e.token)) {
            core.setSecret(e.token);
        }
-        if (e.url === undefined && e.host === undefined) {
+        if (!isDefined(e.url) && !isDefined(e.host)) {
            // The proxy needs one of these to work. If both are defined, the url has the precedence.
            throw new util_1.ConfigurationError("Invalid credentials - must specify host or url");
        }
@@ -1 +1 @@
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+{"version":3,"file":"start-proxy.js","sourceRoot":"","sources":["../src/start-proxy.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAyCA,wCA8FC;AAvID,oDAAsC;AAEtC,2CAAsD;AAEtD,iCAA4C;AAW5C,MAAM,yBAAyB,GAA6B;IAC1D,IAAI,EAAE,kBAAkB;IACxB,MAAM,EAAE,YAAY;IACpB,UAAU,EAAE,cAAc;IAC1B,MAAM,EAAE,cAAc;IACtB,IAAI,EAAE,iBAAiB;IACvB,IAAI,EAAE,gBAAgB;IACtB,EAAE,EAAE,gBAAgB;IACpB,oFAAoF;IACpF,OAAO,EAAE,EAAE;IACX,GAAG,EAAE,EAAE;IACP,KAAK,EAAE,EAAE;CACD,CAAC;AAEX;;;;GAIG;AACH,SAAS,SAAS,CAAI,KAA2B;IAC/C,OAAO,KAAK,KAAK,SAAS,IAAI,KAAK,KAAK,IAAI,CAAC;AAC/C,CAAC;AAED,kEAAkE;AAClE,+DAA+D;AAC/D,gDAAgD;AAChD,SAAgB,cAAc,CAC5B,MAAc,EACd,eAAmC,EACnC,qBAAyC,EACzC,cAAkC;IAElC,MAAM,QAAQ,GAAG,cAAc,CAAC,CAAC,CAAC,IAAA,yBAAa,EAAC,cAAc,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;IAC5E,MAAM,uBAAuB,GAAG,QAAQ;QACtC,CAAC,CAAC,yBAAyB,CAAC,QAAQ,CAAC;QACrC,CAAC,CAAC,SAAS,CAAC;IAEd,IAAI,cAAsB,CAAC;IAC3B,IAAI,qBAAqB,KAAK,SAAS,EAAE,CAAC;QACxC,MAAM,CAAC,IAAI,CAAC,qCAAqC,CAAC,CAAC;QACnD,cAAc,GAAG,MAAM,CAAC,IAAI,CAAC,qBAAqB,EAAE,QAAQ,CAAC,CAAC,QAAQ,EAAE,CAAC;IAC3E,CAAC;SAAM,IAAI,eAAe,KAAK,SAAS,EAAE,CAAC;QACzC,MAAM,CAAC,IAAI,CAAC,+BAA+B,CAAC,CAAC;QAC7C,cAAc,GAAG,eAAe,CAAC;IACnC,CAAC;SAAM,CAAC;QACN,MAAM,CAAC,IAAI,CAAC,yBAAyB,CAAC,CAAC;QACvC,OAAO,EAAE,CAAC;IACZ,CAAC;IAED,qCAAqC;IACrC,IAAI,MAAoB,CAAC;IACzB,IAAI,CAAC;QACH,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,cAAc,CAAiB,CAAC;IACtD,CAAC;IAAC,MAAM,CAAC;QACP,oEAAoE;QACpE,MAAM,CAAC,KAAK,CAAC,uCAAuC,CAAC,CAAC;QACtD,MAAM,IAAI,yBAAkB,CAAC,6BAA6B,CAAC,CAAC;IAC9D,CAAC;IAED,iDAAiD;IACjD,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE,CAAC;QAC3B,MAAM,IAAI,yBAAkB,CAC1B,4EAA4E,CAC7E,CAAC;IACJ,CAAC;IAED,MAAM,GAAG,GAAiB,EAAE,CAAC;IAC7B,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;QACvB,IAAI,CAAC,KAAK,IAAI,IAAI,OAAO,CAAC,KAAK,QAAQ,EAAE,CAAC;YACxC,MAAM,IAAI,yBAAkB,CAAC,yCAAyC,CAAC,CAAC;QAC1E,CAAC;QAED,mEAAmE;QACnE,IAAI,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC1B,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC;QAC7B,CAAC;QACD,IAAI,SAAS,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC;YACvB,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;QAC1B,CAAC;QAED,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC;YAC5C,yFAAyF;YACzF,MAAM,IAAI,yBAAkB,CAC1B,gDAAgD,CACjD,CAAC;QACJ,CAAC;QAED,kFAAkF;QAClF,iEAAiE;QACjE,IAAI,uBAAuB,IAAI,CAAC,CAAC,IAAI,KAAK,uBAAuB,EAAE,CAAC;YAClE,SAAS;QACX,CAAC;QAED,MAAM,WAAW,GAAG,CAAC,GAAuB,EAAW,EAAE;YACvD,OAAO,GAAG,CAAC,CAAC,CAAC,gBAAgB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;QACjD,CAAC,CAAC;QAEF,IACE,CAAC,WAAW,CAAC,CAAC,CAAC,IAAI,CAAC;YACpB,CAAC,WAAW,CAAC,CAAC,CAAC,IAAI,CAAC;YACpB,CAAC,WAAW,CAAC,CAAC,CAAC,GAAG,CAAC;YACnB,CAAC,WAAW,CAAC,CAAC,CAAC,QAAQ,CAAC;YACxB,CAAC,WAAW,CAAC,CAAC,CAAC,QAAQ,CAAC;YACxB,CAAC,WAAW,CAAC,CAAC,CAAC,KAAK,CAAC,EACrB,CAAC;YACD,MAAM,IAAI,yBAAkB,CAC1B,qEAAqE,CACtE,CAAC;QACJ,CAAC;QAED,GAAG,CAAC,IAAI,CAAC;YACP,IAAI,EAAE,CAAC,CAAC,IAAI;YACZ,IAAI,EAAE,CAAC,CAAC,IAAI;YACZ,GAAG,EAAE,CAAC,CAAC,GAAG;YACV,QAAQ,EAAE,CAAC,CAAC,QAAQ;YACpB,QAAQ,EAAE,CAAC,CAAC,QAAQ;YACpB,KAAK,EAAE,CAAC,CAAC,KAAK;SACf,CAAC,CAAC;IACL,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC"}
@@ -41,6 +41,7 @@ const logging_1 = require("./logging");
 const startProxyExports = __importStar(require("./start-proxy"));
 const testing_utils_1 = require("./testing-utils");
 (0, testing_utils_1.setupTests)(ava_1.default);
+const toEncodedJSON = (data) => Buffer.from(JSON.stringify(data)).toString("base64");
 (0, ava_1.default)("getCredentials prefers registriesCredentials over registrySecrets", async (t) => {
    const registryCredentials = Buffer.from(JSON.stringify([
        { type: "npm_registry", host: "npm.pkg.github.com", token: "abc" },
@@ -52,19 +53,40 @@ const testing_utils_1 = require("./testing-utils");
    t.is(credentials.length, 1);
    t.is(credentials[0].host, "npm.pkg.github.com");
 });
-(0, ava_1.default)("getCredentials throws error when credential missing host and url", async (t) => {
-    const registryCredentials = Buffer.from(JSON.stringify([{ type: "npm_registry", token: "abc" }])).toString("base64");
+(0, ava_1.default)("getCredentials throws an error when configurations are not an array", async (t) => {
+    const registryCredentials = Buffer.from(JSON.stringify({ type: "npm_registry", token: "abc" })).toString("base64");
    t.throws(() => startProxyExports.getCredentials((0, logging_1.getRunnerLogger)(true), undefined, registryCredentials, undefined), {
-        message: "Invalid credentials - must specify host or url",
+        message: "Expected credentials data to be an array of configurations, but it is not.",
    });
 });
+(0, ava_1.default)("getCredentials throws error when credential is not an object", async (t) => {
+    const testCredentials = [["foo"], [null]].map(toEncodedJSON);
+    for (const testCredential of testCredentials) {
+        t.throws(() => startProxyExports.getCredentials((0, logging_1.getRunnerLogger)(true), undefined, testCredential, undefined), {
+            message: "Invalid credentials - must be an object",
+        });
+    }
+});
+(0, ava_1.default)("getCredentials throws error when credential missing host and url", async (t) => {
+    const testCredentials = [
+        [{ type: "npm_registry", token: "abc" }],
+        [{ type: "npm_registry", token: "abc", host: null }],
+        [{ type: "npm_registry", token: "abc", url: null }],
+    ].map(toEncodedJSON);
+    for (const testCredential of testCredentials) {
+        t.throws(() => startProxyExports.getCredentials((0, logging_1.getRunnerLogger)(true), undefined, testCredential, undefined), {
+            message: "Invalid credentials - must specify host or url",
+        });
+    }
+});
 (0, ava_1.default)("getCredentials filters by language when specified", async (t) => {
    const mixedCredentials = [
        { type: "npm_registry", host: "npm.pkg.github.com", token: "abc" },
        { type: "maven_repository", host: "maven.pkg.github.com", token: "def" },
        { type: "nuget_feed", host: "nuget.pkg.github.com", token: "ghi" },
+        { type: "goproxy_server", host: "goproxy.example.com", token: "jkl" },
    ];
-    const credentials = startProxyExports.getCredentials((0, logging_1.getRunnerLogger)(true), undefined, Buffer.from(JSON.stringify(mixedCredentials)).toString("base64"), "java");
+    const credentials = startProxyExports.getCredentials((0, logging_1.getRunnerLogger)(true), undefined, toEncodedJSON(mixedCredentials), "java");
    t.is(credentials.length, 1);
    t.is(credentials[0].type, "maven_repository");
 });
@@ -73,10 +95,11 @@ const testing_utils_1 = require("./testing-utils");
        { type: "npm_registry", host: "npm.pkg.github.com", token: "abc" },
        { type: "maven_repository", host: "maven.pkg.github.com", token: "def" },
        { type: "nuget_feed", host: "nuget.pkg.github.com", token: "ghi" },
+        { type: "goproxy_server", host: "goproxy.example.com", token: "jkl" },
    ];
-    const credentialsInput = Buffer.from(JSON.stringify(mixedCredentials)).toString("base64");
+    const credentialsInput = toEncodedJSON(mixedCredentials);
    const credentials = startProxyExports.getCredentials((0, logging_1.getRunnerLogger)(true), undefined, credentialsInput, undefined);
-    t.is(credentials.length, 3);
+    t.is(credentials.length, mixedCredentials.length);
 });
 (0, ava_1.default)("getCredentials throws an error when non-printable characters are used", async (t) => {
    const invalidCredentials = [
@@ -1 +1 @@
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+{"version":3,"file":"start-proxy.test.js","sourceRoot":"","sources":["../src/start-proxy.test.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,8CAAuB;AAEvB,uCAA4C;AAC5C,iEAAmD;AACnD,mDAA6C;AAE7C,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,MAAM,aAAa,GAAG,CAAC,IAAS,EAAE,EAAE,CAClC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC;AAEvD,IAAA,aAAI,EAAC,mEAAmE,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACpF,MAAM,mBAAmB,GAAG,MAAM,CAAC,IAAI,CACrC,IAAI,CAAC,SAAS,CAAC;QACb,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,oBAAoB,EAAE,KAAK,EAAE,KAAK,EAAE;KACnE,CAAC,CACH,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC;IACrB,MAAM,eAAe,GAAG,IAAI,CAAC,SAAS,CAAC;QACrC,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,oBAAoB,EAAE,KAAK,EAAE,KAAK,EAAE;KACnE,CAAC,CAAC;IAEH,MAAM,WAAW,GAAG,iBAAiB,CAAC,cAAc,CAClD,IAAA,yBAAe,EAAC,IAAI,CAAC,EACrB,eAAe,EACf,mBAAmB,EACnB,SAAS,CACV,CAAC;IACF,CAAC,CAAC,EAAE,CAAC,WAAW,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;IAC5B,CAAC,CAAC,EAAE,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,oBAAoB,CAAC,CAAC;AAClD,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,qEAAqE,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACtF,MAAM,mBAAmB,GAAG,MAAM,CAAC,IAAI,CACrC,IAAI,CAAC,SAAS,CAAC,EAAE,IAAI,EAAE,cAAc,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC,CACvD,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC;IAErB,CAAC,CAAC,MAAM,CACN,GAAG,EAAE,CACH,iBAAiB,CAAC,cAAc,CAC9B,IAAA,yBAAe,EAAC,IAAI,CAAC,EACrB,SAAS,EACT,mBAAmB,EACnB,SAAS,CACV,EACH;QACE,OAAO,EACL,4EAA4E;KAC/E,CACF,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,8DAA8D,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAC/E,MAAM,eAAe,GAAG,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC;IAE7D,KAAK,MAAM,cAAc,IAAI,eAAe,EAAE,CAAC;QAC7C,CAAC,CAAC,MAAM,CACN,GAAG,EAAE,CACH,iBAAiB,CAAC,cAAc,CAC9B,IAAA,yBAAe,EAAC,IAAI,CAAC,EACrB,SAAS,EACT,cAAc,EACd,SAAS,CACV,EACH;YACE,OAAO,EAAE,yCAAyC;SACnD,CACF,CAAC;IACJ,CAAC;AACH,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,kEAAkE,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACnF,MAAM,eAAe,GAAG;QACtB,CAAC,EAAE,IAAI,EAAE,cAAc,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC;QACxC,CAAC,EAAE,IAAI,EAAE,cAAc,EAAE,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC;QACpD,CAAC,EAAE,IAAI,EAAE,cAAc,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,EAAE,CAAC;KACpD,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC;IAErB,KAAK,MAAM,cAAc,IAAI,eAAe,EAAE,CAAC;QAC7C,CAAC,CAAC,MAAM,CACN,GAAG,EAAE,CACH,iBAAiB,CAAC,cAAc,CAC9B,IAAA,yBAAe,EAAC,IAAI,CAAC,EACrB,SAAS,EACT,cAAc,EACd,SAAS,CACV,EACH;YACE,OAAO,EAAE,gDAAgD;SAC1D,CACF,CAAC;IACJ,CAAC;AACH,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,mDAAmD,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACpE,MAAM,gBAAgB,GAAG;QACvB,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,oBAAoB,EAAE,KAAK,EAAE,KAAK,EAAE;QAClE,EAAE,IAAI,EAAE,kBAAkB,EAAE,IAAI,EAAE,sBAAsB,EAAE,KAAK,EAAE,KAAK,EAAE;QACxE,EAAE,IAAI,EAAE,YAAY,EAAE,IAAI,EAAE,sBAAsB,EAAE,KAAK,EAAE,KAAK,EAAE;QAClE,EAAE,IAAI,EAAE,gBAAgB,EAAE,IAAI,EAAE,qBAAqB,EAAE,KAAK,EAAE,KAAK,EAAE;KACtE,CAAC;IAEF,MAAM,WAAW,GAAG,iBAAiB,CAAC,cAAc,CAClD,IAAA,yBAAe,EAAC,IAAI,CAAC,EACrB,SAAS,EACT,aAAa,CAAC,gBAAgB,CAAC,EAC/B,MAAM,CACP,CAAC;IACF,CAAC,CAAC,EAAE,CAAC,WAAW,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;IAC5B,CAAC,CAAC,EAAE,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAC;AAChD,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,mEAAmE,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACpF,MAAM,gBAAgB,GAAG;QACvB,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,oBAAoB,EAAE,KAAK,EAAE,KAAK,EAAE;QAClE,EAAE,IAAI,EAAE,kBAAkB,EAAE,IAAI,EAAE,sBAAsB,EAAE,KAAK,EAAE,KAAK,EAAE;QACxE,EAAE,IAAI,EAAE,YAAY,EAAE,IAAI,EAAE,sBAAsB,EAAE,KAAK,EAAE,KAAK,EAAE;QAClE,EAAE,IAAI,EAAE,gBAAgB,EAAE,IAAI,EAAE,qBAAqB,EAAE,KAAK,EAAE,KAAK,EAAE;KACtE,CAAC;IACF,MAAM,gBAAgB,GAAG,aAAa,CAAC,gBAAgB,CAAC,CAAC;IAEzD,MAAM,WAAW,GAAG,iBAAiB,CAAC,cAAc,CAClD,IAAA,yBAAe,EAAC,IAAI,CAAC,EACrB,SAAS,EACT,gBAAgB,EAChB,SAAS,CACV,CAAC;IACF,CAAC,CAAC,EAAE,CAAC,WAAW,CAAC,MAAM,EAAE,gBAAgB,CAAC,MAAM,CAAC,CAAC;AACpD,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,uEAAuE,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACxF,MAAM,kBAAkB,GAAG;QACzB,EAAE,IAAI,EAAE,YAAY,EAAE,IAAI,EAAE,uBAAuB,EAAE,KAAK,EAAE,WAAW,EAAE,EAAE,mCAAmC;QAC9G,EAAE,IAAI,EAAE,YAAY,EAAE,IAAI,EAAE,6BAA6B,EAAE,EAAE,kCAAkC;QAC/F;YACE,IAAI,EAAE,YAAY;YAClB,IAAI,EAAE,uBAAuB;YAC7B,QAAQ,EAAE,WAAW;SACtB,EAAE,sCAAsC;QACzC,EAAE,IAAI,EAAE,YAAY,EAAE,IAAI,EAAE,uBAAuB,EAAE,QAAQ,EAAE,SAAS,EAAE,EAAE,sCAAsC;KACnH,CAAC;IAEF,KAAK,MAAM,iBAAiB,IAAI,kBAAkB,EAAE,CAAC;QACnD,MAAM,gBAAgB,GAAG,MAAM,CAAC,IAAI,CAClC,IAAI,CAAC,SAAS,CAAC,CAAC,iBAAiB,CAAC,CAAC,CACpC,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC;QAErB,CAAC,CAAC,MAAM,CACN,GAAG,EAAE,CACH,iBAAiB,CAAC,cAAc,CAC9B,IAAA,yBAAe,EAAC,IAAI,CAAC,EACrB,SAAS,EACT,gBAAgB,EAChB,SAAS,CACV,EACH;YACE,OAAO,EACL,qEAAqE;SACxE,CACF,CAAC;IACJ,CAAC;AACH,CAAC,CAAC,CAAC"}
@@ -38,6 +38,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.InvalidSarifUploadError = exports.CodeQualityTarget = exports.CodeScanningTarget = exports.SARIF_UPLOAD_ENDPOINT = void 0;
 exports.shouldShowCombineSarifFilesDeprecationWarning = shouldShowCombineSarifFilesDeprecationWarning;
+exports.throwIfCombineSarifFilesDisabled = throwIfCombineSarifFilesDisabled;
 exports.populateRunAutomationDetails = populateRunAutomationDetails;
 exports.findSarifFilesInDir = findSarifFilesInDir;
 exports.getSarifFilePaths = getSarifFilePaths;
@@ -65,6 +66,7 @@ const codeql_1 = require("./codeql");
 const config_utils_1 = require("./config-utils");
 const diff_informed_analysis_utils_1 = require("./diff-informed-analysis-utils");
 const environment_1 = require("./environment");
+const feature_flags_1 = require("./feature-flags");
 const fingerprints = __importStar(require("./fingerprints"));
 const gitUtils = __importStar(require("./git-utils"));
 const init_1 = require("./init");
@@ -146,6 +148,36 @@ async function shouldShowCombineSarifFilesDeprecationWarning(sarifObjects, githu
    return (!areAllRunsUnique(sarifObjects) &&
        !process.env.CODEQL_MERGE_SARIF_DEPRECATION_WARNING);
 }
+async function throwIfCombineSarifFilesDisabled(sarifObjects, features, githubVersion) {
+    if (!(await shouldDisableCombineSarifFiles(sarifObjects, features, githubVersion))) {
+        return;
+    }
+    // TODO: Update this changelog URL to the correct one when it's published.
+    const deprecationMoreInformationMessage = "For more information, see https://github.blog/changelog/2024-05-06-code-scanning-will-stop-combining-runs-from-a-single-upload";
+    throw new util_1.ConfigurationError(`The CodeQL Action does not support uploading multiple SARIF runs with the same category. Please update your workflow to upload a single run per category. ${deprecationMoreInformationMessage}`);
+}
+// Checks whether combining SARIF files should be disabled.
+async function shouldDisableCombineSarifFiles(sarifObjects, features, githubVersion) {
+    if (githubVersion.type === util_1.GitHubVariant.GHES) {
+        // Never block on GHES versions before 3.18.
+        if (semver.lt(githubVersion.version, "3.18.0-0")) {
+            return false;
+        }
+    }
+    else {
+        // Never block when the feature flag is disabled.
+        if (!(await features.getValue(feature_flags_1.Feature.DisableCombineSarifFiles))) {
+            return false;
+        }
+    }
+    if (areAllRunsUnique(sarifObjects)) {
+        // If all runs are unique, we can safely combine them.
+        return false;
+    }
+    // Combining SARIF files is not supported and Code Scanning will return an
+    // error if multiple runs with the same category are uploaded.
+    return true;
+}
 // Takes a list of paths to sarif files and combines them together using the
 // CLI `github merge-results` command when all SARIF files are produced by
 // CodeQL. Otherwise, it will fall back to combining the files in the action.
@@ -160,9 +192,10 @@ async function combineSarifFilesUsingCLI(sarifFiles, gitHubVersion, features, lo
    });
    const deprecationWarningMessage = gitHubVersion.type === util_1.GitHubVariant.GHES
        ? "and will be removed in GitHub Enterprise Server 3.18"
-        : "and will be removed on June 4, 2025";
+        : "and will be removed in July 2025";
    const deprecationMoreInformationMessage = "For more information, see https://github.blog/changelog/2024-05-06-code-scanning-will-stop-combining-runs-from-a-single-upload";
    if (!areAllRunsProducedByCodeQL(sarifObjects)) {
+        await throwIfCombineSarifFilesDisabled(sarifObjects, features, gitHubVersion);
        logger.debug("Not all SARIF files were produced by CodeQL. Merging files in the action.");
        if (await shouldShowCombineSarifFilesDeprecationWarning(sarifObjects, gitHubVersion)) {
            logger.warning(`Uploading multiple SARIF runs with the same category is deprecated ${deprecationWarningMessage}. Please update your workflow to upload a single run per category. ${deprecationMoreInformationMessage}`);
@@ -194,6 +227,7 @@ async function combineSarifFilesUsingCLI(sarifFiles, gitHubVersion, features, lo
        codeQL = initCodeQLResult.codeql;
    }
    if (!(await codeQL.supportsFeature(tools_features_1.ToolsFeature.SarifMergeRunsFromEqualCategory))) {
+        await throwIfCombineSarifFilesDisabled(sarifObjects, features, gitHubVersion);
        logger.warning("The CodeQL CLI does not support merging SARIF files. Merging files in the action.");
        if (await shouldShowCombineSarifFilesDeprecationWarning(sarifObjects, gitHubVersion)) {
            logger.warning(`Uploading multiple CodeQL runs with the same category is deprecated ${deprecationWarningMessage} for CodeQL CLI 2.16.6 and earlier. Please update your CodeQL CLI version or update your workflow to set a distinct category for each CodeQL run. ${deprecationMoreInformationMessage}`);
@@ -1 +1 @@
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@@ -39,6 +39,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const ava_1 = __importDefault(require("ava"));
+const feature_flags_1 = require("./feature-flags");
 const logging_1 = require("./logging");
 const testing_utils_1 = require("./testing-utils");
 const uploadLib = __importStar(require("./upload-lib"));
@@ -256,6 +257,67 @@ ava_1.default.beforeEach(() => {
        type: util_1.GitHubVariant.DOTCOM,
    }));
 });
+(0, ava_1.default)("throwIfCombineSarifFilesDisabled when on dotcom with feature flag", async (t) => {
+    await t.throwsAsync(uploadLib.throwIfCombineSarifFilesDisabled([createMockSarif("abc", "def"), createMockSarif("abc", "def")], (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.DisableCombineSarifFiles]), {
+        type: util_1.GitHubVariant.DOTCOM,
+    }));
+});
+(0, ava_1.default)("throwIfCombineSarifFilesDisabled when on dotcom without feature flag", async (t) => {
+    await t.notThrowsAsync(uploadLib.throwIfCombineSarifFilesDisabled([createMockSarif("abc", "def"), createMockSarif("abc", "def")], (0, testing_utils_1.createFeatures)([]), {
+        type: util_1.GitHubVariant.DOTCOM,
+    }));
+});
+(0, ava_1.default)("throwIfCombineSarifFilesDisabled when on GHES 3.13", async (t) => {
+    await t.notThrowsAsync(uploadLib.throwIfCombineSarifFilesDisabled([createMockSarif("abc", "def"), createMockSarif("abc", "def")], (0, testing_utils_1.createFeatures)([]), {
+        type: util_1.GitHubVariant.GHES,
+        version: "3.13.2",
+    }));
+});
+(0, ava_1.default)("throwIfCombineSarifFilesDisabled when on GHES 3.14", async (t) => {
+    await t.notThrowsAsync(uploadLib.throwIfCombineSarifFilesDisabled([createMockSarif("abc", "def"), createMockSarif("abc", "def")], (0, testing_utils_1.createFeatures)([]), {
+        type: util_1.GitHubVariant.GHES,
+        version: "3.14.0",
+    }));
+});
+(0, ava_1.default)("throwIfCombineSarifFilesDisabled when on GHES 3.17", async (t) => {
+    await t.notThrowsAsync(uploadLib.throwIfCombineSarifFilesDisabled([createMockSarif("abc", "def"), createMockSarif("abc", "def")], (0, testing_utils_1.createFeatures)([]), {
+        type: util_1.GitHubVariant.GHES,
+        version: "3.17.0",
+    }));
+});
+(0, ava_1.default)("throwIfCombineSarifFilesDisabled when on GHES 3.18 pre", async (t) => {
+    await t.throwsAsync(uploadLib.throwIfCombineSarifFilesDisabled([createMockSarif("abc", "def"), createMockSarif("abc", "def")], (0, testing_utils_1.createFeatures)([]), {
+        type: util_1.GitHubVariant.GHES,
+        version: "3.18.0.pre1",
+    }));
+});
+(0, ava_1.default)("throwIfCombineSarifFilesDisabled when on GHES 3.18 alpha", async (t) => {
+    await t.throwsAsync(uploadLib.throwIfCombineSarifFilesDisabled([createMockSarif("abc", "def"), createMockSarif("abc", "def")], (0, testing_utils_1.createFeatures)([]), {
+        type: util_1.GitHubVariant.GHES,
+        version: "3.18.0-alpha.1",
+    }));
+});
+(0, ava_1.default)("throwIfCombineSarifFilesDisabled when on GHES 3.18", async (t) => {
+    await t.throwsAsync(uploadLib.throwIfCombineSarifFilesDisabled([createMockSarif("abc", "def"), createMockSarif("abc", "def")], (0, testing_utils_1.createFeatures)([]), {
+        type: util_1.GitHubVariant.GHES,
+        version: "3.18.0",
+    }));
+});
+(0, ava_1.default)("throwIfCombineSarifFilesDisabled with only 1 run", async (t) => {
+    await t.notThrowsAsync(uploadLib.throwIfCombineSarifFilesDisabled([createMockSarif("abc", "def")], (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.DisableCombineSarifFiles]), {
+        type: util_1.GitHubVariant.DOTCOM,
+    }));
+});
+(0, ava_1.default)("throwIfCombineSarifFilesDisabled with distinct categories", async (t) => {
+    await t.notThrowsAsync(uploadLib.throwIfCombineSarifFilesDisabled([createMockSarif("abc", "def"), createMockSarif("def", "def")], (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.DisableCombineSarifFiles]), {
+        type: util_1.GitHubVariant.DOTCOM,
+    }));
+});
+(0, ava_1.default)("throwIfCombineSarifFilesDisabled with distinct tools", async (t) => {
+    await t.notThrowsAsync(uploadLib.throwIfCombineSarifFilesDisabled([createMockSarif("abc", "abc"), createMockSarif("abc", "def")], (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.DisableCombineSarifFiles]), {
+        type: util_1.GitHubVariant.DOTCOM,
+    }));
+});
 (0, ava_1.default)("shouldConsiderConfigurationError correctly detects configuration errors", (t) => {
    const error1 = [
        "CodeQL analyses from advanced configurations cannot be processed when the default setup is enabled",
@@ -1 +1 @@
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truncated
+{"version":3,"file":"upload-lib.test.js","sourceRoot":"","sources":["../src/upload-lib.test.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,uCAAyB;AACzB,2CAA6B;AAE7B,8CAAuB;AAEvB,mDAA0C;AAC1C,uCAAoD;AACpD,mDAA6D;AAC7D,wDAA0C;AAC1C,iCAA0E;AAE1E,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,aAAI,CAAC,UAAU,CAAC,GAAG,EAAE;IACnB,IAAA,4BAAqB,EAAC,OAAO,CAAC,CAAC;AACjC,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,iCAAiC,EAAE,CAAC,CAAC,EAAE,EAAE;IAC5C,MAAM,SAAS,GAAG,GAAG,SAAS,oCAAoC,CAAC;IACnE,CAAC,CAAC,SAAS,CAAC,GAAG,EAAE,CACf,SAAS,CAAC,uBAAuB,CAC/B,SAAS,CAAC,aAAa,CAAC,SAAS,CAAC,EAClC,SAAS,EACT,IAAA,yBAAe,EAAC,IAAI,CAAC,CACtB,CACF,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,mCAAmC,EAAE,CAAC,CAAC,EAAE,EAAE;IAC9C,MAAM,SAAS,GAAG,GAAG,SAAS,sCAAsC,CAAC;IACrE,CAAC,CAAC,MAAM,CAAC,GAAG,EAAE,CACZ,SAAS,CAAC,uBAAuB,CAC/B,SAAS,CAAC,aAAa,CAAC,SAAS,CAAC,EAClC,SAAS,EACT,IAAA,yBAAe,EAAC,IAAI,CAAC,CACtB,CACF,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,sEAAsE,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACvF,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,MAAM,CAAC;IAC1C,MAAM,WAAW,GAAQ,SAAS,CAAC,YAAY,CAC7C,QAAQ,EACR,mBAAmB,EACnB,KAAK,EACL,SAAS,EACT,EAAE,EACF,IAAI,EACJ,CAAC,EACD,UAAU,EACV,SAAS,EACT,CAAC,QAAQ,EAAE,QAAQ,CAAC,EACpB,iBAAiB,CAClB,CAAC;IACF,kCAAkC;IAClC,CAAC,CAAC,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,CAAC;IAC9B,CAAC,CAAC,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,CAAC;IAE9B,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,cAAc,CAAC;IAClD,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,GAAG,QAAQ,CAAC;IACrC,OAAO,CAAC,GAAG,CAAC,iBAAiB,CAAC,GAAG,QAAQ,CAAC;IAC1C,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC;QAC9B,GAAG,SAAS,oCAAoC,CAAC;IACnD,MAAM,cAAc,GAAQ,SAAS,CAAC,YAAY,CAChD,QAAQ,EACR,qBAAqB,EACrB,KAAK,EACL,SAAS,EACT,EAAE,EACF,IAAI,EACJ,CAAC,EACD,UAAU,EACV,SAAS,EACT,CAAC,QAAQ,EAAE,QAAQ,CAAC,EACpB,iBAAiB,CAClB,CAAC;IACF,gDAAgD;IAChD,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,QAAQ,EAAE,mBAAmB,CAAC,CAAC;IAC1D,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,QAAQ,EAAE,iBAAiB,CAAC,CAAC;IAExD,MAAM,aAAa,GAAQ,SAAS,CAAC,YAAY,CAC/C,YAAY,EACZ,oBAAoB,EACpB,KAAK,EACL,SAAS,EACT,EAAE,EACF,IAAI,EACJ,CAAC,EACD,UAAU,EACV,SAAS,EACT,CAAC,QAAQ,EAAE,QAAQ,CAAC,EACpB,iBAAiB,CAClB,CAAC;IACF,uCAAuC;IACvC,CAAC,CAAC,SAAS,CAAC,aAAa,CAAC,QAAQ,EAAE,mBAAmB,CAAC,CAAC;IACzD,CAAC,CAAC,SAAS,CACT,aAAa,CAAC,QAAQ,EACtB,0CAA0C,CAC3C,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,qBAAqB,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACtC,MAAM,IAAA,iBAAU,EAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QAChC,kCAAkC;QAClC,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,SAAS,CAAC,EAAE,EAAE,CAAC,CAAC;QACnD,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,SAAS,CAAC,EAAE,EAAE,CAAC,CAAC;QAEnD,2CAA2C;QAC3C,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,EAAE,CAAC,CAAC;QAEjD,+CAA+C;QAC/C,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,CAAC;QACxC,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,SAAS,CAAC,EAAE,EAAE,CAAC,CAAC;QAC3D,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC,CAAC;QAChD,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,CAAC,EAAE,EAAE,CAAC,CAAC;QAEnE,4BAA4B;QAC5B,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,CAAC;QACxC,EAAE,CAAC,WAAW,CAAC,MAAM,EAAE,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,KAAK,CAAC,CAAC;QACrE,EAAE,CAAC,WAAW,CACZ,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,SAAS,CAAC,EAC5B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,gBAAgB,CAAC,EAC3C,MAAM,CACP,CAAC;QAEF,+FAA+F;QAC/F,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,iBAAiB,CAAC,EAAE,EAAE,CAAC,CAAC;QAC3D,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,iBAAiB,CAAC,EAAE,EAAE,CAAC,CAAC;QAEnE,MAAM,UAAU,GAAG,SAAS,CAAC,mBAAmB,CAC9C,MAAM,EACN,SAAS,CAAC,kBAAkB,CAAC,cAAc,CAC5C,CAAC;QAEF,CAAC,CAAC,SAAS,CAAC,UAAU,EAAE;YACtB,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,SAAS,CAAC;YAC5B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,SAAS,CAAC;YAC5B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,SAAS,CAAC;YACpC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,CAAC;SAC7C,CAAC,CAAC;QAEH,MAAM,iBAAiB,GAAG,SAAS,CAAC,mBAAmB,CACrD,MAAM,EACN,SAAS,CAAC,iBAAiB,CAAC,cAAc,CAC3C,CAAC;QAEF,CAAC,CAAC,SAAS,CAAC,iBAAiB,EAAE;YAC7B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,iBAAiB,CAAC;YACpC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,iBAAiB,CAAC;SAC7C,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,8BAA8B,EAAE,CAAC,CAAC,EAAE,EAAE;IACzC,IAAI,KAAK,GAAG;QACV,IAAI,EAAE,CAAC,EAAE,CAAC;KACX,CAAC;IACF,MAAM,WAAW,GAAG,+CAA+C,CAAC;IAEpE,IAAI,aAAa,GAAG;QAClB,IAAI,EAAE,CAAC,EAAE,iBAAiB,EAAE,EAAE,EAAE,EAAE,+BAA+B,EAAE,EAAE,CAAC;KACvE,CAAC;IAEF,sDAAsD;IACtD,IAAI,aAAa,GAAG,SAAS,CAAC,4BAA4B,CACxD,KAAK,EACL,8BAA8B,EAC9B,WAAW,EACX,sCAAsC,CACvC,CAAC;IACF,CAAC,CAAC,SAAS,CAAC,aAAa,EAAE,aAAa,CAAC,CAAC;IAE1C,kEAAkE;IAClE,aAAa,GAAG,SAAS,CAAC,4BAA4B,CACpD,KAAK,EACL,+BAA+B,EAC/B,WAAW,EACX,EAAE,CACH,CAAC;IACF,CAAC,CAAC,SAAS,CAAC,aAAa,EAAE,aAAa,CAAC,CAAC;IAE1C,4DAA4D;IAC5D,KAAK,GAAG,EAAE,IAAI,EAAE,CAAC,EAAE,iBAAiB,EAAE,EAAE,EAAE,EAAE,OAAO,EAAE,EAAE,CAAC,EAAE,CAAC;IAC3D,aAAa,GAAG,EAAE,IAAI,EAAE,CAAC,EAAE,iBAAiB,EAAE,EAAE,EAAE,EAAE,OAAO,EAAE,EAAE,CAAC,EAAE,CAAC;IACnE,aAAa,GAAG,SAAS,CAAC,4BAA4B,CACpD,KAAK,EACL,SLine truncated
@@ -1,6 +1,6 @@
 {
  "name": "codeql",
-  "version": "3.29.2",
+  "version": "3.29.3",
  "lockfileVersion": 3,
  "requires": true,
  "packages": {
@@ -1,12 +1,12 @@
 {
  "name": "codeql",
-  "version": "3.29.2",
+  "version": "3.29.3",
  "lockfileVersion": 3,
  "requires": true,
  "packages": {
    "": {
      "name": "codeql",
-      "version": "3.29.2",
+      "version": "3.29.3",
      "license": "MIT",
      "dependencies": {
        "@actions/artifact": "^2.3.1",
@@ -1,6 +1,6 @@
 {
  "name": "codeql",
-  "version": "3.29.2",
+  "version": "3.29.3",
  "private": true,
  "description": "CodeQL action",
  "scripts": {
@@ -1,5 +1,7 @@
+import * as github from "@actions/github";
 import test from "ava";

+import { getPullRequestBranches, isAnalyzingPullRequest } from "./actions-util";
 import { computeAutomationID } from "./api-client";
 import { EnvVar } from "./environment";
 import { setupTests } from "./testing-utils";
@@ -7,6 +9,39 @@ import { initializeEnvironment } from "./util";

 setupTests(test);

+function withMockedContext<T>(mockPayload: any, testFn: () => T): T {
+  const originalPayload = github.context.payload;
+  github.context.payload = mockPayload;
+  try {
+    return testFn();
+  } finally {
+    github.context.payload = originalPayload;
+  }
+}
+
+function withMockedEnv<T>(
+  envVars: Record<string, string | undefined>,
+  testFn: () => T,
+): T {
+  const originalEnv = { ...process.env };
+
+  // Apply environment changes
+  for (const [key, value] of Object.entries(envVars)) {
+    if (value === undefined) {
+      delete process.env[key];
+    } else {
+      process.env[key] = value;
+    }
+  }
+
+  try {
+    return testFn();
+  } finally {
+    // Restore original environment
+    process.env = originalEnv;
+  }
+}
+
 test("computeAutomationID()", async (t) => {
  let actualAutomationID = computeAutomationID(
    ".github/workflows/codeql-analysis.yml:analyze",
@@ -58,6 +93,102 @@ test("computeAutomationID()", async (t) => {
  );
 });

+test("getPullRequestBranches() with pull request context", (t) => {
+  withMockedContext(
+    {
+      pull_request: {
+        number: 123,
+        base: { ref: "main" },
+        head: { label: "user:feature-branch" },
+      },
+    },
+    () => {
+      t.deepEqual(getPullRequestBranches(), {
+        base: "main",
+        head: "user:feature-branch",
+      });
+      t.is(isAnalyzingPullRequest(), true);
+    },
+  );
+});
+
+test("getPullRequestBranches() returns undefined with push context", (t) => {
+  withMockedContext(
+    {
+      push: {
+        ref: "refs/heads/main",
+      },
+    },
+    () => {
+      t.is(getPullRequestBranches(), undefined);
+      t.is(isAnalyzingPullRequest(), false);
+    },
+  );
+});
+
+test("getPullRequestBranches() with Default Setup environment variables", (t) => {
+  withMockedContext({}, () => {
+    withMockedEnv(
+      {
+        CODE_SCANNING_REF: "refs/heads/feature-branch",
+        CODE_SCANNING_BASE_BRANCH: "main",
+      },
+      () => {
+        t.deepEqual(getPullRequestBranches(), {
+          base: "main",
+          head: "refs/heads/feature-branch",
+        });
+        t.is(isAnalyzingPullRequest(), true);
+      },
+    );
+  });
+});
+
+test("getPullRequestBranches() returns undefined when only CODE_SCANNING_REF is set", (t) => {
+  withMockedContext({}, () => {
+    withMockedEnv(
+      {
+        CODE_SCANNING_REF: "refs/heads/feature-branch",
+        CODE_SCANNING_BASE_BRANCH: undefined,
+      },
+      () => {
+        t.is(getPullRequestBranches(), undefined);
+        t.is(isAnalyzingPullRequest(), false);
+      },
+    );
+  });
+});
+
+test("getPullRequestBranches() returns undefined when only CODE_SCANNING_BASE_BRANCH is set", (t) => {
+  withMockedContext({}, () => {
+    withMockedEnv(
+      {
+        CODE_SCANNING_REF: undefined,
+        CODE_SCANNING_BASE_BRANCH: "main",
+      },
+      () => {
+        t.is(getPullRequestBranches(), undefined);
+        t.is(isAnalyzingPullRequest(), false);
+      },
+    );
+  });
+});
+
+test("getPullRequestBranches() returns undefined when no PR context", (t) => {
+  withMockedContext({}, () => {
+    withMockedEnv(
+      {
+        CODE_SCANNING_REF: undefined,
+        CODE_SCANNING_BASE_BRANCH: undefined,
+      },
+      () => {
+        t.is(getPullRequestBranches(), undefined);
+        t.is(isAnalyzingPullRequest(), false);
+      },
+    );
+  });
+});
+
 test("initializeEnvironment", (t) => {
  initializeEnvironment("1.2.3");
  t.deepEqual(process.env[EnvVar.VERSION], "1.2.3");
@@ -3,6 +3,7 @@ import * as path from "path";

 import * as core from "@actions/core";
 import * as toolrunner from "@actions/exec/lib/toolrunner";
+import * as github from "@actions/github";
 import * as io from "@actions/io";
 import { JSONSchemaForNPMPackageJsonFiles } from "@schemastore/package";

@@ -363,3 +364,48 @@ export const restoreInputs = function () {
    }
  }
 };
+
+export interface PullRequestBranches {
+  base: string;
+  head: string;
+}
+
+/**
+ * Returns the base and head branches of the pull request being analyzed.
+ *
+ * @returns the base and head branches of the pull request, or undefined if
+ * we are not analyzing a pull request.
+ */
+export function getPullRequestBranches(): PullRequestBranches | undefined {
+  const pullRequest = github.context.payload.pull_request;
+  if (pullRequest) {
+    return {
+      base: pullRequest.base.ref,
+      // We use the head label instead of the head ref here, because the head
+      // ref lacks owner information and by itself does not uniquely identify
+      // the head branch (which may be in a forked repository).
+      head: pullRequest.head.label,
+    };
+  }
+
+  // PR analysis under Default Setup does not have the pull_request context,
+  // but it should set CODE_SCANNING_REF and CODE_SCANNING_BASE_BRANCH.
+  const codeScanningRef = process.env.CODE_SCANNING_REF;
+  const codeScanningBaseBranch = process.env.CODE_SCANNING_BASE_BRANCH;
+  if (codeScanningRef && codeScanningBaseBranch) {
+    return {
+      base: codeScanningBaseBranch,
+      // PR analysis under Default Setup analyzes the PR head commit instead of
+      // the merge commit, so we can use the provided ref directly.
+      head: codeScanningRef,
+    };
+  }
+  return undefined;
+}
+
+/**
+ * Returns whether we are analyzing a pull request.
+ */
+export function isAnalyzingPullRequest(): boolean {
+  return getPullRequestBranches() !== undefined;
+}
@@ -39,6 +39,7 @@ test("analyze action with RAM & threads from environment variables", async (t) =
    };
    sinon.stub(configUtils, "getConfig").resolves({
      gitHubVersion,
+      augmentationProperties: {},
      languages: [],
      packs: [],
      trapCaches: {},
@@ -37,6 +37,7 @@ test("analyze action with RAM & threads from action inputs", async (t) => {
    };
    sinon.stub(configUtils, "getConfig").resolves({
      gitHubVersion,
+      augmentationProperties: {},
      languages: [],
      packs: [],
      trapCaches: {},
@@ -27,6 +27,10 @@ import { EnvVar } from "./environment";
 import { Features } from "./feature-flags";
 import { Language } from "./languages";
 import { getActionsLogger, Logger } from "./logging";
+import {
+  OverlayDatabaseMode,
+  uploadOverlayBaseDatabaseToCache,
+} from "./overlay-database-utils";
 import { getRepositoryNwo } from "./repository";
 import * as statusReport from "./status-report";
 import {
@@ -291,8 +295,15 @@ async function run() {
      logger,
    );

+    // An overlay-base database should always use the 'overlay' cleanup level
+    // to preserve the cached intermediate results.
+    //
+    // Note that we may be overriding the 'cleanup-level' input parameter.
    const cleanupLevel =
-      actionsUtil.getOptionalInput("cleanup-level") || "brutal";
+      config.augmentationProperties.overlayDatabaseMode ===
+      OverlayDatabaseMode.OverlayBase
+        ? "overlay"
+        : actionsUtil.getOptionalInput("cleanup-level") || "brutal";

    if (actionsUtil.getRequiredInput("skip-queries") !== "true") {
      runStats = await runQueries(
@@ -349,6 +360,9 @@ async function run() {
    // Possibly upload the database bundles for remote queries
    await uploadDatabases(repositoryNwo, config, apiDetails, logger);

+    // Possibly upload the overlay-base database to actions cache
+    await uploadOverlayBaseDatabaseToCache(codeql, config, logger);
+
    // Possibly upload the TRAP caches for later re-use
    const trapCacheUploadStartTime = performance.now();
    didUploadTrapCaches = await uploadTrapCaches(codeql, config, logger);
@@ -6,7 +6,11 @@ import * as io from "@actions/io";
 import del from "del";
 import * as yaml from "js-yaml";

-import * as actionsUtil from "./actions-util";
+import {
+  getRequiredInput,
+  getTemporaryDirectory,
+  PullRequestBranches,
+} from "./actions-util";
 import { getApiClient } from "./api-client";
 import { setupCppAutobuild } from "./autobuild";
 import { CodeQL, getCodeQL } from "./codeql";
@@ -15,13 +19,13 @@ import { getJavaTempDependencyDir } from "./dependency-caching";
 import { addDiagnostic, makeDiagnostic } from "./diagnostics";
 import {
  DiffThunkRange,
-  PullRequestBranches,
  writeDiffRangesJsonFile,
 } from "./diff-informed-analysis-utils";
 import { EnvVar } from "./environment";
 import { FeatureEnablement, Feature } from "./feature-flags";
 import { isScannedLanguage, Language } from "./languages";
 import { Logger, withGroupAsync } from "./logging";
+import { OverlayDatabaseMode } from "./overlay-database-utils";
 import { getRepositoryNwoFromEnv } from "./repository";
 import { DatabaseCreationTimings, EventReport } from "./status-report";
 import { endTracingForCluster } from "./tracer-config";
@@ -392,7 +396,7 @@ function getDiffRanges(
  // uses forward slashes as the path separator, so on Windows we need to
  // replace any backslashes with forward slashes.
  const filename = path
-    .join(actionsUtil.getRequiredInput("checkout_path"), fileDiff.filename)
+    .join(getRequiredInput("checkout_path"), fileDiff.filename)
    .replaceAll(path.sep, "/");

  if (fileDiff.patch === undefined) {
@@ -498,10 +502,7 @@ function writeDiffRangeDataExtensionPack(
    ranges = [{ path: "", startLine: 0, endLine: 0 }];
  }

-  const diffRangeDir = path.join(
-    actionsUtil.getTemporaryDirectory(),
-    "pr-diff-range",
-  );
+  const diffRangeDir = path.join(getTemporaryDirectory(), "pr-diff-range");

  // We expect the Actions temporary directory to already exist, so are mainly
  // using `recursive: true` to avoid errors if the directory already exists,
@@ -604,6 +605,7 @@ export async function runQueries(
 ): Promise<QueriesStatusReport> {
  const statusReport: QueriesStatusReport = {};
  const queryFlags = [memoryFlag, threadsFlag];
+  const incrementalMode: string[] = [];

  if (cleanupLevel !== "overlay") {
    queryFlags.push("--expect-discarded-cache");
@@ -613,10 +615,18 @@ export async function runQueries(
  if (diffRangePackDir) {
    queryFlags.push(`--additional-packs=${diffRangePackDir}`);
    queryFlags.push("--extension-packs=codeql-action/pr-diff-range");
+    incrementalMode.push("diff-informed");
  }
-  const sarifRunPropertyFlag = diffRangePackDir
-    ? "--sarif-run-property=incrementalMode=diff-informed"
-    : undefined;
+  if (
+    config.augmentationProperties.overlayDatabaseMode ===
+    OverlayDatabaseMode.Overlay
+  ) {
+    incrementalMode.push("overlay");
+  }
+  const sarifRunPropertyFlag =
+    incrementalMode.length > 0
+      ? `--sarif-run-property=incrementalMode=${incrementalMode.join(",")}`
+      : undefined;

  const codeql = await getCodeQL(config.codeQLCmd);

@@ -24,7 +24,6 @@ import { DocUrl } from "./doc-url";
 import { FeatureEnablement } from "./feature-flags";
 import { Language } from "./languages";
 import { getRunnerLogger } from "./logging";
-import { OverlayDatabaseMode } from "./overlay-database-utils";
 import { ToolsSource } from "./setup-codeql";
 import {
  setupTests,
@@ -515,7 +514,6 @@ const injectedConfigMacro = test.macro({
        "",
        undefined,
        undefined,
-        OverlayDatabaseMode.None,
        getRunnerLogger(true),
      );

@@ -726,7 +724,6 @@ test("passes a code scanning config AND qlconfig to the CLI", async (t: Executio
      "",
      undefined,
      "/path/to/qlconfig.yml",
-      OverlayDatabaseMode.None,
      getRunnerLogger(true),
    );

@@ -756,7 +753,6 @@ test("does not pass a qlconfig to the CLI when it is undefined", async (t: Execu
      "",
      undefined,
      undefined, // undefined qlconfigFile
-      OverlayDatabaseMode.None,
      getRunnerLogger(true),
    );

@@ -1010,7 +1006,6 @@ test("Avoids duplicating --overwrite flag if specified in CODEQL_ACTION_EXTRA_OP
    "sourceRoot",
    undefined,
    undefined,
-    OverlayDatabaseMode.None,
    getRunnerLogger(false),
  );

@@ -87,7 +87,6 @@ export interface CodeQL {
    sourceRoot: string,
    processName: string | undefined,
    qlconfigFile: string | undefined,
-    overlayDatabaseMode: OverlayDatabaseMode,
    logger: Logger,
  ): Promise<void>;
  /**
@@ -564,7 +563,6 @@ export async function getCodeQLForCmd(
      sourceRoot: string,
      processName: string | undefined,
      qlconfigFile: string | undefined,
-      overlayDatabaseMode: OverlayDatabaseMode,
      logger: Logger,
    ) {
      const extraArgs = config.languages.map(
@@ -602,6 +600,8 @@ export async function getCodeQLForCmd(
        ? "--force-overwrite"
        : "--overwrite";

+      const overlayDatabaseMode =
+        config.augmentationProperties.overlayDatabaseMode;
      if (overlayDatabaseMode === OverlayDatabaseMode.Overlay) {
        const overlayChangesFile = await writeOverlayChangesFile(
          config,
@@ -6,6 +6,7 @@ import test, { ExecutionContext } from "ava";
 import * as yaml from "js-yaml";
 import * as sinon from "sinon";

+import * as actionsUtil from "./actions-util";
 import * as api from "./api-client";
 import { CachingKind } from "./caching-utils";
 import {
@@ -16,8 +17,10 @@ import {
 } from "./codeql";
 import * as configUtils from "./config-utils";
 import { Feature } from "./feature-flags";
+import * as gitUtils from "./git-utils";
 import { Language } from "./languages";
 import { getRunnerLogger } from "./logging";
+import { OverlayDatabaseMode } from "./overlay-database-utils";
 import { parseRepositoryNwo } from "./repository";
 import {
  setupTests,
@@ -25,6 +28,7 @@ import {
  createFeatures,
  getRecordingLogger,
  LoggedMessage,
+  mockCodeQLVersion,
 } from "./testing-utils";
 import {
  GitHubVariant,
@@ -62,6 +66,7 @@ function createTestInitConfigInputs(
      tempDir: "",
      codeql: {} as CodeQL,
      workspacePath: "",
+      sourceRoot: "",
      githubVersion,
      apiDetails: {
        auth: "token",
@@ -814,11 +819,14 @@ const calculateAugmentationMacro = test.macro({
    const actualAugmentationProperties =
      await configUtils.calculateAugmentation(
        getCachedCodeQL(),
+        { owner: "github", repo: "repo" },
        createFeatures([]),
        rawPacksInput,
        rawQueriesInput,
        rawQualityQueriesInput,
        languages,
+        "", // sourceRoot
+        undefined, // buildMode
        mockLogger,
      );
    t.deepEqual(actualAugmentationProperties, expectedAugmentationProperties);
@@ -943,11 +951,14 @@ const calculateAugmentationErrorMacro = test.macro({
      () =>
        configUtils.calculateAugmentation(
          getCachedCodeQL(),
+          { owner: "github", repo: "repo" },
          createFeatures([]),
          rawPacksInput,
          rawQueriesInput,
          rawQualityQueriesInput,
          languages,
+          "", // sourceRoot
+          undefined, // buildMode
          mockLogger,
        ),
      { message: expectedError },
@@ -1192,3 +1203,324 @@ for (const { displayName, language, feature } of [
    ]);
  });
 }
+
+interface OverlayDatabaseModeTestSetup {
+  overlayDatabaseEnvVar: string | undefined;
+  isFeatureEnabled: boolean;
+  isPullRequest: boolean;
+  isDefaultBranch: boolean;
+  repositoryOwner: string;
+  buildMode: BuildMode | undefined;
+  languages: Language[];
+  codeqlVersion: string;
+  gitRoot: string | undefined;
+}
+
+const defaultOverlayDatabaseModeTestSetup: OverlayDatabaseModeTestSetup = {
+  overlayDatabaseEnvVar: undefined,
+  isFeatureEnabled: false,
+  isPullRequest: false,
+  isDefaultBranch: false,
+  repositoryOwner: "github",
+  buildMode: BuildMode.None,
+  languages: [Language.javascript],
+  codeqlVersion: "2.21.0",
+  gitRoot: "/some/git/root",
+};
+
+const getOverlayDatabaseModeMacro = test.macro({
+  exec: async (
+    t: ExecutionContext,
+    _title: string,
+    setupOverrides: Partial<OverlayDatabaseModeTestSetup>,
+    expected: {
+      overlayDatabaseMode: OverlayDatabaseMode;
+      useOverlayDatabaseCaching: boolean;
+    },
+  ) => {
+    return await withTmpDir(async (tempDir) => {
+      const messages: LoggedMessage[] = [];
+      const logger = getRecordingLogger(messages);
+
+      // Save the original environment
+      const originalEnv = { ...process.env };
+
+      try {
+        const setup = {
+          ...defaultOverlayDatabaseModeTestSetup,
+          ...setupOverrides,
+        };
+
+        // Set up environment variable if specified
+        delete process.env.CODEQL_OVERLAY_DATABASE_MODE;
+        if (setup.overlayDatabaseEnvVar !== undefined) {
+          process.env.CODEQL_OVERLAY_DATABASE_MODE =
+            setup.overlayDatabaseEnvVar;
+        }
+
+        // Mock feature flags
+        const features = createFeatures(
+          setup.isFeatureEnabled ? [Feature.OverlayAnalysis] : [],
+        );
+
+        // Mock isAnalyzingPullRequest function
+        sinon
+          .stub(actionsUtil, "isAnalyzingPullRequest")
+          .returns(setup.isPullRequest);
+
+        // Mock repository owner
+        const repository = {
+          owner: setup.repositoryOwner,
+          repo: "test-repo",
+        };
+
+        // Set up CodeQL mock
+        const codeql = mockCodeQLVersion(setup.codeqlVersion);
+
+        // Mock git root detection
+        if (setup.gitRoot !== undefined) {
+          sinon.stub(gitUtils, "getGitRoot").resolves(setup.gitRoot);
+        }
+
+        // Mock default branch detection
+        sinon
+          .stub(gitUtils, "isAnalyzingDefaultBranch")
+          .resolves(setup.isDefaultBranch);
+
+        const result = await configUtils.getOverlayDatabaseMode(
+          codeql,
+          repository,
+          features,
+          setup.languages,
+          tempDir, // sourceRoot
+          setup.buildMode,
+          logger,
+        );
+
+        t.deepEqual(result, expected);
+      } finally {
+        // Restore the original environment
+        process.env = originalEnv;
+      }
+    });
+  },
+  title: (_, title) => `getOverlayDatabaseMode: ${title}`,
+});
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Environment variable override - Overlay",
+  {
+    overlayDatabaseEnvVar: "overlay",
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.Overlay,
+    useOverlayDatabaseCaching: false,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Environment variable override - OverlayBase",
+  {
+    overlayDatabaseEnvVar: "overlay-base",
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.OverlayBase,
+    useOverlayDatabaseCaching: false,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Environment variable override - None",
+  {
+    overlayDatabaseEnvVar: "none",
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Ignore invalid environment variable",
+  {
+    overlayDatabaseEnvVar: "invalid-mode",
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Ignore feature flag when analyzing non-default branch",
+  {
+    isFeatureEnabled: true,
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Overlay-base database on default branch when feature enabled",
+  {
+    isFeatureEnabled: true,
+    isDefaultBranch: true,
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.OverlayBase,
+    useOverlayDatabaseCaching: true,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "No overlay-base database on default branch when feature disabled",
+  {
+    isDefaultBranch: true,
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Overlay analysis on PR when feature enabled",
+  {
+    isFeatureEnabled: true,
+    isPullRequest: true,
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.Overlay,
+    useOverlayDatabaseCaching: true,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "No overlay analysis on PR when feature disabled",
+  {
+    isPullRequest: true,
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Overlay PR analysis by env for dsp-testing",
+  {
+    overlayDatabaseEnvVar: "overlay",
+    repositoryOwner: "dsp-testing",
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.Overlay,
+    useOverlayDatabaseCaching: false,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Overlay PR analysis by env for other-org",
+  {
+    overlayDatabaseEnvVar: "overlay",
+    repositoryOwner: "other-org",
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.Overlay,
+    useOverlayDatabaseCaching: false,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Overlay PR analysis by feature flag for dsp-testing",
+  {
+    isFeatureEnabled: true,
+    isPullRequest: true,
+    repositoryOwner: "dsp-testing",
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.Overlay,
+    useOverlayDatabaseCaching: true,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "No overlay PR analysis by feature flag for other-org",
+  {
+    isFeatureEnabled: true,
+    isPullRequest: true,
+    repositoryOwner: "other-org",
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Fallback due to autobuild with traced language",
+  {
+    overlayDatabaseEnvVar: "overlay",
+    buildMode: BuildMode.Autobuild,
+    languages: [Language.java],
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Fallback due to no build mode with traced language",
+  {
+    overlayDatabaseEnvVar: "overlay",
+    buildMode: undefined,
+    languages: [Language.java],
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Fallback due to old CodeQL version",
+  {
+    overlayDatabaseEnvVar: "overlay",
+    codeqlVersion: "2.14.0",
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+  },
+);
+
+test(
+  getOverlayDatabaseModeMacro,
+  "Fallback due to missing git root",
+  {
+    overlayDatabaseEnvVar: "overlay",
+    gitRoot: undefined,
+  },
+  {
+    overlayDatabaseMode: OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+  },
+);
@@ -5,13 +5,19 @@ import { performance } from "perf_hooks";
 import * as yaml from "js-yaml";
 import * as semver from "semver";

+import { isAnalyzingPullRequest } from "./actions-util";
 import * as api from "./api-client";
 import { CachingKind, getCachingKind } from "./caching-utils";
 import { CodeQL } from "./codeql";
 import { shouldPerformDiffInformedAnalysis } from "./diff-informed-analysis-utils";
 import { Feature, FeatureEnablement } from "./feature-flags";
-import { Language, parseLanguage } from "./languages";
+import { getGitRoot, isAnalyzingDefaultBranch } from "./git-utils";
+import { isTracedLanguage, Language, parseLanguage } from "./languages";
 import { Logger } from "./logging";
+import {
+  CODEQL_OVERLAY_MINIMUM_VERSION,
+  OverlayDatabaseMode,
+} from "./overlay-database-utils";
 import { RepositoryNwo } from "./repository";
 import { downloadTrapCaches } from "./trap-caching";
 import {
@@ -19,6 +25,7 @@ import {
  prettyPrintPack,
  ConfigurationError,
  BuildMode,
+  codeQlVersionAtLeast,
 } from "./util";

 // Property names from the user-supplied config file.
@@ -189,6 +196,23 @@ export interface AugmentationProperties {
   * Extra query exclusions to append to the config.
   */
  extraQueryExclusions?: ExcludeQueryFilter[];
+
+  /**
+   * The overlay database mode to use.
+   */
+  overlayDatabaseMode: OverlayDatabaseMode;
+
+  /**
+   * Whether to use caching for overlay databases. If it is true, the action
+   * will upload the created overlay-base database to the actions cache, and
+   * download an overlay-base database from the actions cache before it creates
+   * a new overlay database. If it is false, the action assumes that the
+   * workflow will be responsible for managing database storage and retrieval.
+   *
+   * This property has no effect unless `overlayDatabaseMode` is `Overlay` or
+   * `OverlayBase`.
+   */
+  useOverlayDatabaseCaching: boolean;
 }

 /**
@@ -202,6 +226,8 @@ export const defaultAugmentationProperties: AugmentationProperties = {
  queriesInput: undefined,
  qualityQueriesInput: undefined,
  extraQueryExclusions: [],
+  overlayDatabaseMode: OverlayDatabaseMode.None,
+  useOverlayDatabaseCaching: false,
 };
 export type Packs = Partial<Record<Language, string[]>>;

@@ -426,6 +452,7 @@ export interface InitConfigInputs {
  tempDir: string;
  codeql: CodeQL;
  workspacePath: string;
+  sourceRoot: string;
  githubVersion: GitHubVersion;
  apiDetails: api.GitHubApiCombinedDetails;
  features: FeatureEnablement;
@@ -459,6 +486,7 @@ export async function getDefaultConfig({
  repository,
  tempDir,
  codeql,
+  sourceRoot,
  githubVersion,
  features,
  logger,
@@ -479,11 +507,14 @@ export async function getDefaultConfig({

  const augmentationProperties = await calculateAugmentation(
    codeql,
+    repository,
    features,
    packsInput,
    queriesInput,
    qualityQueriesInput,
    languages,
+    sourceRoot,
+    buildMode,
    logger,
  );

@@ -551,6 +582,7 @@ async function loadConfig({
  tempDir,
  codeql,
  workspacePath,
+  sourceRoot,
  githubVersion,
  apiDetails,
  features,
@@ -590,11 +622,14 @@ async function loadConfig({

  const augmentationProperties = await calculateAugmentation(
    codeql,
+    repository,
    features,
    packsInput,
    queriesInput,
    qualityQueriesInput,
    languages,
+    sourceRoot,
+    buildMode,
    logger,
  );

@@ -631,12 +666,15 @@ async function loadConfig({
 * the config file sent to the CLI.
 *
 * @param codeql The CodeQL object.
+ * @param repository The repository to analyze.
 * @param features The feature enablement object.
 * @param rawPacksInput The packs input from the action configuration.
 * @param rawQueriesInput The queries input from the action configuration.
 * @param languages The languages that the config file is for. If the packs input
 *    is non-empty, then there must be exactly one language. Otherwise, an
 *    error is thrown.
+ * @param sourceRoot The source root of the repository.
+ * @param buildMode The build mode to use.
 * @param logger The logger to use for logging.
 *
 * @returns The properties that need to be augmented in the config file.
@@ -647,11 +685,14 @@ async function loadConfig({
 // exported for testing.
 export async function calculateAugmentation(
  codeql: CodeQL,
+  repository: RepositoryNwo,
  features: FeatureEnablement,
  rawPacksInput: string | undefined,
  rawQueriesInput: string | undefined,
  rawQualityQueriesInput: string | undefined,
  languages: Language[],
+  sourceRoot: string,
+  buildMode: BuildMode | undefined,
  logger: Logger,
 ): Promise<AugmentationProperties> {
  const packsInputCombines = shouldCombine(rawPacksInput);
@@ -665,6 +706,20 @@ export async function calculateAugmentation(
    rawQueriesInput,
    queriesInputCombines,
  );
+  const { overlayDatabaseMode, useOverlayDatabaseCaching } =
+    await getOverlayDatabaseMode(
+      codeql,
+      repository,
+      features,
+      languages,
+      sourceRoot,
+      buildMode,
+      logger,
+    );
+  logger.info(
+    `Using overlay database mode: ${overlayDatabaseMode} ` +
+      `${useOverlayDatabaseCaching ? "with" : "without"} caching.`,
+  );

  const qualityQueriesInput = parseQueriesFromInput(
    rawQualityQueriesInput,
@@ -685,6 +740,8 @@ export async function calculateAugmentation(
    queriesInputCombines,
    qualityQueriesInput,
    extraQueryExclusions,
+    overlayDatabaseMode,
+    useOverlayDatabaseCaching,
  };
 }

@@ -711,6 +768,118 @@ function parseQueriesFromInput(
  return trimmedInput.split(",").map((query) => ({ uses: query.trim() }));
 }

+/**
+ * Calculate and validate the overlay database mode and caching to use.
+ *
+ * - If the environment variable `CODEQL_OVERLAY_DATABASE_MODE` is set, use it.
+ *   In this case, the workflow is responsible for managing database storage and
+ *   retrieval, and the action will not perform overlay database caching. Think
+ *   of it as a "manual control" mode where the calling workflow is responsible
+ *   for making sure that everything is set up correctly.
+ * - Otherwise, if `Feature.OverlayAnalysis` is enabled, calculate the mode
+ *   based on what we are analyzing. Think of it as a "automatic control" mode
+ *   where the action will do the right thing by itself.
+ *   - If we are analyzing a pull request, use `Overlay` with caching.
+ *   - If we are analyzing the default branch, use `OverlayBase` with caching.
+ * - Otherwise, use `None`.
+ *
+ * For `Overlay` and `OverlayBase`, the function performs further checks and
+ * reverts to `None` if any check should fail.
+ *
+ * @returns An object containing the overlay database mode and whether the
+ * action should perform overlay-base database caching.
+ */
+export async function getOverlayDatabaseMode(
+  codeql: CodeQL,
+  repository: RepositoryNwo,
+  features: FeatureEnablement,
+  languages: Language[],
+  sourceRoot: string,
+  buildMode: BuildMode | undefined,
+  logger: Logger,
+): Promise<{
+  overlayDatabaseMode: OverlayDatabaseMode;
+  useOverlayDatabaseCaching: boolean;
+}> {
+  let overlayDatabaseMode = OverlayDatabaseMode.None;
+  let useOverlayDatabaseCaching = false;
+
+  const modeEnv = process.env.CODEQL_OVERLAY_DATABASE_MODE;
+  // Any unrecognized CODEQL_OVERLAY_DATABASE_MODE value will be ignored and
+  // treated as if the environment variable was not set.
+  if (
+    modeEnv === OverlayDatabaseMode.Overlay ||
+    modeEnv === OverlayDatabaseMode.OverlayBase ||
+    modeEnv === OverlayDatabaseMode.None
+  ) {
+    overlayDatabaseMode = modeEnv;
+    logger.info(
+      `Setting overlay database mode to ${overlayDatabaseMode} ` +
+        "from the CODEQL_OVERLAY_DATABASE_MODE environment variable.",
+    );
+  } else if (
+    // TODO: Remove the repository owner check once support for overlay analysis
+    // stabilizes, and no more backward-incompatible changes are expected.
+    ["github", "dsp-testing"].includes(repository.owner) &&
+    (await features.getValue(Feature.OverlayAnalysis, codeql))
+  ) {
+    if (isAnalyzingPullRequest()) {
+      overlayDatabaseMode = OverlayDatabaseMode.Overlay;
+      useOverlayDatabaseCaching = true;
+      logger.info(
+        `Setting overlay database mode to ${overlayDatabaseMode} ` +
+          "with caching because we are analyzing a pull request.",
+      );
+    } else if (await isAnalyzingDefaultBranch()) {
+      overlayDatabaseMode = OverlayDatabaseMode.OverlayBase;
+      useOverlayDatabaseCaching = true;
+      logger.info(
+        `Setting overlay database mode to ${overlayDatabaseMode} ` +
+          "with caching because we are analyzing the default branch.",
+      );
+    }
+  }
+
+  const nonOverlayAnalysis = {
+    overlayDatabaseMode: OverlayDatabaseMode.None,
+    useOverlayDatabaseCaching: false,
+  };
+
+  if (overlayDatabaseMode === OverlayDatabaseMode.None) {
+    return nonOverlayAnalysis;
+  }
+
+  if (buildMode !== BuildMode.None && languages.some(isTracedLanguage)) {
+    logger.warning(
+      `Cannot build an ${overlayDatabaseMode} database because ` +
+        `build-mode is set to "${buildMode}" instead of "none". ` +
+        "Falling back to creating a normal full database instead.",
+    );
+    return nonOverlayAnalysis;
+  }
+  if (!(await codeQlVersionAtLeast(codeql, CODEQL_OVERLAY_MINIMUM_VERSION))) {
+    logger.warning(
+      `Cannot build an ${overlayDatabaseMode} database because ` +
+        `the CodeQL CLI is older than ${CODEQL_OVERLAY_MINIMUM_VERSION}. ` +
+        "Falling back to creating a normal full database instead.",
+    );
+    return nonOverlayAnalysis;
+  }
+  if ((await getGitRoot(sourceRoot)) === undefined) {
+    logger.warning(
+      `Cannot build an ${overlayDatabaseMode} database because ` +
+        `the source root "${sourceRoot}" is not inside a git repository. ` +
+        "Falling back to creating a normal full database instead.",
+    );
+    return nonOverlayAnalysis;
+  }
+
+  return {
+    overlayDatabaseMode,
+    useOverlayDatabaseCaching,
+  };
+}
+
 /**
 * Pack names must be in the form of `scope/name`, with only alpha-numeric characters,
 * and `-` allowed as long as not the first or last char.
@@ -1,45 +1,12 @@
 import * as fs from "fs";
 import * as path from "path";

-import * as github from "@actions/github";
-
 import * as actionsUtil from "./actions-util";
+import type { PullRequestBranches } from "./actions-util";
 import type { CodeQL } from "./codeql";
 import { Feature, FeatureEnablement } from "./feature-flags";
 import { Logger } from "./logging";

-export interface PullRequestBranches {
-  base: string;
-  head: string;
-}
-
-function getPullRequestBranches(): PullRequestBranches | undefined {
-  const pullRequest = github.context.payload.pull_request;
-  if (pullRequest) {
-    return {
-      base: pullRequest.base.ref,
-      // We use the head label instead of the head ref here, because the head
-      // ref lacks owner information and by itself does not uniquely identify
-      // the head branch (which may be in a forked repository).
-      head: pullRequest.head.label,
-    };
-  }
-
-  // PR analysis under Default Setup does not have the pull_request context,
-  // but it should set CODE_SCANNING_REF and CODE_SCANNING_BASE_BRANCH.
-  const codeScanningRef = process.env.CODE_SCANNING_REF;
-  const codeScanningBaseBranch = process.env.CODE_SCANNING_BASE_BRANCH;
-  if (codeScanningRef && codeScanningBaseBranch) {
-    return {
-      base: codeScanningBaseBranch,
-      // PR analysis under Default Setup analyzes the PR head commit instead of
-      // the merge commit, so we can use the provided ref directly.
-      head: codeScanningRef,
-    };
-  }
-  return undefined;
-}
-
 /**
 * Check if the action should perform diff-informed analysis.
 */
@@ -70,7 +37,7 @@ export async function getDiffInformedAnalysisBranches(
    return undefined;
  }

-  const branches = getPullRequestBranches();
+  const branches = actionsUtil.getPullRequestBranches();
  if (!branches) {
    logger.info(
      "Not performing diff-informed analysis " +
@@ -7,6 +7,7 @@ import { getApiClient } from "./api-client";
 import type { CodeQL } from "./codeql";
 import * as defaults from "./defaults.json";
 import { Logger } from "./logging";
+import { CODEQL_OVERLAY_MINIMUM_VERSION } from "./overlay-database-utils";
 import { RepositoryNwo } from "./repository";
 import { ToolsFeature } from "./tools-features";
 import * as util from "./util";
@@ -46,11 +47,13 @@ export enum Feature {
  CppBuildModeNone = "cpp_build_mode_none",
  CppDependencyInstallation = "cpp_dependency_installation_enabled",
  DiffInformedQueries = "diff_informed_queries",
+  DisableCombineSarifFiles = "disable_combine_sarif_files",
  DisableCsharpBuildless = "disable_csharp_buildless",
  DisableJavaBuildlessEnabled = "disable_java_buildless_enabled",
  DisableKotlinAnalysisEnabled = "disable_kotlin_analysis_enabled",
  ExportDiagnosticsEnabled = "export_diagnostics_enabled",
  ExtractToToolcache = "extract_to_toolcache",
+  OverlayAnalysis = "overlay_analysis",
  PythonDefaultIsToNotExtractStdlib = "python_default_is_to_not_extract_stdlib",
  QaTelemetryEnabled = "qa_telemetry_enabled",
  RustAnalysis = "rust_analysis",
@@ -114,6 +117,11 @@ export const featureConfig: Record<
    envVar: "CODEQL_ACTION_DIFF_INFORMED_QUERIES",
    minimumVersion: "2.21.0",
  },
+  [Feature.DisableCombineSarifFiles]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_DISABLE_COMBINE_SARIF_FILES",
+    minimumVersion: undefined,
+  },
  [Feature.DisableCsharpBuildless]: {
    defaultValue: false,
    envVar: "CODEQL_ACTION_DISABLE_CSHARP_BUILDLESS",
@@ -142,6 +150,11 @@ export const featureConfig: Record<
    envVar: "CODEQL_ACTION_EXTRACT_TOOLCACHE",
    minimumVersion: undefined,
  },
+  [Feature.OverlayAnalysis]: {
+    defaultValue: false,
+    envVar: "CODEQL_ACTION_OVERLAY_ANALYSIS",
+    minimumVersion: CODEQL_OVERLAY_MINIMUM_VERSION,
+  },
  [Feature.PythonDefaultIsToNotExtractStdlib]: {
    defaultValue: false,
    envVar: "CODEQL_ACTION_DISABLE_PYTHON_STANDARD_LIBRARY_EXTRACTION",
@@ -36,14 +36,16 @@ import { Feature, featureConfig, Features } from "./feature-flags";
 import {
  checkInstallPython311,
  cleanupDatabaseClusterDirectory,
-  getOverlayDatabaseMode,
  initCodeQL,
  initConfig,
  runInit,
 } from "./init";
 import { Language } from "./languages";
 import { getActionsLogger, Logger } from "./logging";
-import { OverlayDatabaseMode } from "./overlay-database-utils";
+import {
+  downloadOverlayBaseDatabaseFromCache,
+  OverlayDatabaseMode,
+} from "./overlay-database-utils";
 import { getRepositoryNwo } from "./repository";
 import { ToolsSource } from "./setup-codeql";
 import {
@@ -297,6 +299,14 @@ async function run() {

  const configFile = getOptionalInput("config-file");

+  // path.resolve() respects the intended semantics of source-root. If
+  // source-root is relative, it is relative to the GITHUB_WORKSPACE. If
+  // source-root is absolute, it is used as given.
+  const sourceRoot = path.resolve(
+    getRequiredEnvParam("GITHUB_WORKSPACE"),
+    getOptionalInput("source-root") || "",
+  );
+
  try {
    const statusReportBase = await createStatusReportBase(
      ActionName.Init,
@@ -363,6 +373,7 @@ async function run() {
      tempDir: getTemporaryDirectory(),
      codeql,
      workspacePath: getRequiredEnvParam("GITHUB_WORKSPACE"),
+      sourceRoot,
      githubVersion: gitHubVersion,
      apiDetails,
      features,
@@ -390,20 +401,38 @@ async function run() {
  }

  try {
-    const sourceRoot = path.resolve(
-      getRequiredEnvParam("GITHUB_WORKSPACE"),
-      getOptionalInput("source-root") || "",
-    );
+    if (
+      config.augmentationProperties.overlayDatabaseMode ===
+        OverlayDatabaseMode.Overlay &&
+      config.augmentationProperties.useOverlayDatabaseCaching
+    ) {
+      // OverlayDatabaseMode.Overlay comes in two flavors: with database
+      // caching, or without. The flavor with database caching is intended to be
+      // an "automatic control" mode, which is supposed to be fail-safe. If we
+      // cannot download an overlay-base database, we revert to
+      // OverlayDatabaseMode.None so that the workflow can continue to run.
+      //
+      // The flavor without database caching is intended to be a "manual
+      // control" mode, where the workflow is supposed to make all the
+      // necessary preparations. So, in that mode, we would assume that
+      // everything is in order and let the analysis fail if that turns out not
+      // to be the case.
+      const overlayDatabaseDownloaded =
+        await downloadOverlayBaseDatabaseFromCache(codeql, config, logger);
+      if (!overlayDatabaseDownloaded) {
+        config.augmentationProperties.overlayDatabaseMode =
+          OverlayDatabaseMode.None;
+        logger.info(
+          "No overlay-base database found in cache, " +
+            `reverting overlay database mode to ${OverlayDatabaseMode.None}.`,
+        );
+      }
+    }

-    const overlayDatabaseMode = await getOverlayDatabaseMode(
-      (await codeql.getVersion()).version,
-      config,
-      sourceRoot,
-      logger,
-    );
-    logger.info(`Using overlay database mode: ${overlayDatabaseMode}`);
-
-    if (overlayDatabaseMode !== OverlayDatabaseMode.Overlay) {
+    if (
+      config.augmentationProperties.overlayDatabaseMode !==
+      OverlayDatabaseMode.Overlay
+    ) {
      cleanupDatabaseClusterDirectory(config, logger);
    }

@@ -675,7 +704,6 @@ async function run() {
      "Runner.Worker.exe",
      getOptionalInput("registries"),
      apiDetails,
-      overlayDatabaseMode,
      logger,
    );
    if (tracerConfig !== undefined) {
@@ -3,20 +3,14 @@ import * as path from "path";

 import * as toolrunner from "@actions/exec/lib/toolrunner";
 import * as io from "@actions/io";
-import * as semver from "semver";

 import { getOptionalInput, isSelfHostedRunner } from "./actions-util";
 import { GitHubApiCombinedDetails, GitHubApiDetails } from "./api-client";
 import { CodeQL, setupCodeQL } from "./codeql";
 import * as configUtils from "./config-utils";
 import { CodeQLDefaultVersionInfo, FeatureEnablement } from "./feature-flags";
-import { getGitRoot } from "./git-utils";
 import { Language } from "./languages";
 import { Logger, withGroupAsync } from "./logging";
-import {
-  CODEQL_OVERLAY_MINIMUM_VERSION,
-  OverlayDatabaseMode,
-} from "./overlay-database-utils";
 import { ToolsSource } from "./setup-codeql";
 import { ZstdAvailability } from "./tar";
 import { ToolsDownloadStatusReport } from "./tools-download";
@@ -74,47 +68,6 @@ export async function initConfig(
  });
 }

-export async function getOverlayDatabaseMode(
-  codeqlVersion: string,
-  config: configUtils.Config,
-  sourceRoot: string,
-  logger: Logger,
-): Promise<OverlayDatabaseMode> {
-  const overlayDatabaseMode = process.env.CODEQL_OVERLAY_DATABASE_MODE;
-
-  if (
-    overlayDatabaseMode === OverlayDatabaseMode.Overlay ||
-    overlayDatabaseMode === OverlayDatabaseMode.OverlayBase
-  ) {
-    if (config.buildMode !== util.BuildMode.None) {
-      logger.warning(
-        `Cannot build an ${overlayDatabaseMode} database because ` +
-          `build-mode is set to "${config.buildMode}" instead of "none". ` +
-          "Falling back to creating a normal full database instead.",
-      );
-      return OverlayDatabaseMode.None;
-    }
-    if (semver.lt(codeqlVersion, CODEQL_OVERLAY_MINIMUM_VERSION)) {
-      logger.warning(
-        `Cannot build an ${overlayDatabaseMode} database because ` +
-          `the CodeQL CLI is older than ${CODEQL_OVERLAY_MINIMUM_VERSION}. ` +
-          "Falling back to creating a normal full database instead.",
-      );
-      return OverlayDatabaseMode.None;
-    }
-    if ((await getGitRoot(sourceRoot)) === undefined) {
-      logger.warning(
-        `Cannot build an ${overlayDatabaseMode} database because ` +
-          `the source root "${sourceRoot}" is not inside a git repository. ` +
-          "Falling back to creating a normal full database instead.",
-      );
-      return OverlayDatabaseMode.None;
-    }
-    return overlayDatabaseMode as OverlayDatabaseMode;
-  }
-  return OverlayDatabaseMode.None;
-}
-
 export async function runInit(
  codeql: CodeQL,
  config: configUtils.Config,
@@ -122,7 +75,6 @@ export async function runInit(
  processName: string | undefined,
  registriesInput: string | undefined,
  apiDetails: GitHubApiCombinedDetails,
-  overlayDatabaseMode: OverlayDatabaseMode,
  logger: Logger,
 ): Promise<TracerConfig | undefined> {
  fs.mkdirSync(config.dbLocation, { recursive: true });
@@ -146,7 +98,6 @@ export async function runInit(
        sourceRoot,
        processName,
        qlconfigFile,
-        overlayDatabaseMode,
        logger,
      ),
  );
@@ -1,10 +1,14 @@
 import * as fs from "fs";
 import * as path from "path";

-import { getTemporaryDirectory } from "./actions-util";
+import * as actionsCache from "@actions/cache";
+
+import { getRequiredInput, getTemporaryDirectory } from "./actions-util";
+import { type CodeQL } from "./codeql";
 import { type Config } from "./config-utils";
-import { getFileOidsUnderPath } from "./git-utils";
+import { getCommitOid, getFileOidsUnderPath } from "./git-utils";
 import { Logger } from "./logging";
+import { isInTestMode, withTimeout } from "./util";

 export enum OverlayDatabaseMode {
  Overlay = "overlay",
@@ -122,3 +126,218 @@ function computeChangedFiles(
  }
  return changes;
 }
+
+// Constants for database caching
+const CACHE_VERSION = 1;
+const CACHE_PREFIX = "codeql-overlay-base-database";
+const MAX_CACHE_OPERATION_MS = 120_000; // Two minutes
+
+/**
+ * Checks that the overlay-base database is valid by checking for the
+ * existence of the base database OIDs file.
+ *
+ * @param config The configuration object
+ * @param logger The logger instance
+ * @param warningPrefix Prefix for the check failure warning message
+ * @returns True if the verification succeeded, false otherwise
+ */
+export function checkOverlayBaseDatabase(
+  config: Config,
+  logger: Logger,
+  warningPrefix: string,
+): boolean {
+  // An overlay-base database should contain the base database OIDs file.
+  const baseDatabaseOidsFilePath = getBaseDatabaseOidsFilePath(config);
+  if (!fs.existsSync(baseDatabaseOidsFilePath)) {
+    logger.warning(
+      `${warningPrefix}: ${baseDatabaseOidsFilePath} does not exist`,
+    );
+    return false;
+  }
+  return true;
+}
+
+/**
+ * Uploads the overlay-base database to the GitHub Actions cache. If conditions
+ * for uploading are not met, the function does nothing and returns false.
+ *
+ * This function uses the `checkout_path` input to determine the repository path
+ * and works only when called from `analyze` or `upload-sarif`.
+ *
+ * @param codeql The CodeQL instance
+ * @param config The configuration object
+ * @param logger The logger instance
+ * @returns A promise that resolves to true if the upload was performed and
+ * successfully completed, or false otherwise
+ */
+export async function uploadOverlayBaseDatabaseToCache(
+  codeql: CodeQL,
+  config: Config,
+  logger: Logger,
+): Promise<boolean> {
+  const overlayDatabaseMode = config.augmentationProperties.overlayDatabaseMode;
+  if (overlayDatabaseMode !== OverlayDatabaseMode.OverlayBase) {
+    logger.debug(
+      `Overlay database mode is ${overlayDatabaseMode}. ` +
+        "Skip uploading overlay-base database to cache.",
+    );
+    return false;
+  }
+  if (!config.augmentationProperties.useOverlayDatabaseCaching) {
+    logger.debug(
+      "Overlay database caching is disabled. " +
+        "Skip uploading overlay-base database to cache.",
+    );
+    return false;
+  }
+  if (isInTestMode()) {
+    logger.debug(
+      "In test mode. Skip uploading overlay-base database to cache.",
+    );
+    return false;
+  }
+
+  const databaseIsValid = checkOverlayBaseDatabase(
+    config,
+    logger,
+    "Abort uploading overlay-base database to cache",
+  );
+  if (!databaseIsValid) {
+    return false;
+  }
+
+  const dbLocation = config.dbLocation;
+  const codeQlVersion = (await codeql.getVersion()).version;
+  const checkoutPath = getRequiredInput("checkout_path");
+  const cacheKey = await generateCacheKey(config, codeQlVersion, checkoutPath);
+  logger.info(
+    `Uploading overlay-base database to Actions cache with key ${cacheKey}`,
+  );
+
+  try {
+    const cacheId = await withTimeout(
+      MAX_CACHE_OPERATION_MS,
+      actionsCache.saveCache([dbLocation], cacheKey),
+      () => {},
+    );
+    if (cacheId === undefined) {
+      logger.warning("Timed out while uploading overlay-base database");
+      return false;
+    }
+  } catch (error) {
+    logger.warning(
+      "Failed to upload overlay-base database to cache: " +
+        `${error instanceof Error ? error.message : String(error)}`,
+    );
+    return false;
+  }
+  logger.info(`Successfully uploaded overlay-base database from ${dbLocation}`);
+  return true;
+}
+
+/**
+ * Downloads the overlay-base database from the GitHub Actions cache. If conditions
+ * for downloading are not met, the function does nothing and returns false.
+ *
+ * @param codeql The CodeQL instance
+ * @param config The configuration object
+ * @param logger The logger instance
+ * @returns A promise that resolves to true if the download was performed and
+ * successfully completed, or false otherwise
+ */
+export async function downloadOverlayBaseDatabaseFromCache(
+  codeql: CodeQL,
+  config: Config,
+  logger: Logger,
+): Promise<boolean> {
+  const overlayDatabaseMode = config.augmentationProperties.overlayDatabaseMode;
+  if (overlayDatabaseMode !== OverlayDatabaseMode.Overlay) {
+    logger.debug(
+      `Overlay database mode is ${overlayDatabaseMode}. ` +
+        "Skip downloading overlay-base database from cache.",
+    );
+    return false;
+  }
+  if (!config.augmentationProperties.useOverlayDatabaseCaching) {
+    logger.debug(
+      "Overlay database caching is disabled. " +
+        "Skip downloading overlay-base database from cache.",
+    );
+    return false;
+  }
+  if (isInTestMode()) {
+    logger.debug(
+      "In test mode. Skip downloading overlay-base database from cache.",
+    );
+    return false;
+  }
+
+  const dbLocation = config.dbLocation;
+  const codeQlVersion = (await codeql.getVersion()).version;
+  const restoreKey = getCacheRestoreKey(config, codeQlVersion);
+
+  logger.info(
+    `Looking in Actions cache for overlay-base database with restore key ${restoreKey}`,
+  );
+
+  try {
+    const foundKey = await withTimeout(
+      MAX_CACHE_OPERATION_MS,
+      actionsCache.restoreCache([dbLocation], restoreKey),
+      () => {
+        logger.info("Timed out downloading overlay-base database from cache");
+      },
+    );
+
+    if (foundKey === undefined) {
+      logger.info("No overlay-base database found in Actions cache");
+      return false;
+    }
+
+    logger.info(
+      `Downloaded overlay-base database in cache with key ${foundKey}`,
+    );
+  } catch (error) {
+    logger.warning(
+      "Failed to download overlay-base database from cache: " +
+        `${error instanceof Error ? error.message : String(error)}`,
+    );
+    return false;
+  }
+
+  const databaseIsValid = checkOverlayBaseDatabase(
+    config,
+    logger,
+    "Downloaded overlay-base database is invalid",
+  );
+  if (!databaseIsValid) {
+    logger.warning("Downloaded overlay-base database failed validation");
+    return false;
+  }
+
+  logger.info(`Successfully downloaded overlay-base database to ${dbLocation}`);
+  return true;
+}
+
+async function generateCacheKey(
+  config: Config,
+  codeQlVersion: string,
+  checkoutPath: string,
+): Promise<string> {
+  const sha = await getCommitOid(checkoutPath);
+  return `${getCacheRestoreKey(config, codeQlVersion)}${sha}`;
+}
+
+function getCacheRestoreKey(config: Config, codeQlVersion: string): string {
+  // The restore key (prefix) specifies which cached overlay-base databases are
+  // compatible with the current analysis: the cached database must have the
+  // same cache version and the same CodeQL bundle version.
+  //
+  // Actions cache supports using multiple restore keys to indicate preference.
+  // Technically we prefer a cached overlay-base database with the same SHA as
+  // we are analyzing. However, since overlay-base databases are built from the
+  // default branch and used in PR analysis, it is exceedingly unlikely that
+  // the commit SHA will ever be the same, so we can just leave it out.
+  const languages = [...config.languages].sort().join("_");
+  return `${CACHE_PREFIX}-${CACHE_VERSION}-${languages}-${codeQlVersion}-`;
+}
@@ -6,6 +6,9 @@ import { setupTests } from "./testing-utils";

 setupTests(test);

+const toEncodedJSON = (data: any) =>
+  Buffer.from(JSON.stringify(data)).toString("base64");
+
 test("getCredentials prefers registriesCredentials over registrySecrets", async (t) => {
  const registryCredentials = Buffer.from(
    JSON.stringify([
@@ -26,9 +29,9 @@ test("getCredentials prefers registriesCredentials over registrySecrets", async
  t.is(credentials[0].host, "npm.pkg.github.com");
 });

-test("getCredentials throws error when credential missing host and url", async (t) => {
+test("getCredentials throws an error when configurations are not an array", async (t) => {
  const registryCredentials = Buffer.from(
-    JSON.stringify([{ type: "npm_registry", token: "abc" }]),
+    JSON.stringify({ type: "npm_registry", token: "abc" }),
  ).toString("base64");

  t.throws(
@@ -40,22 +43,66 @@ test("getCredentials throws error when credential missing host and url", async (
        undefined,
      ),
    {
-      message: "Invalid credentials - must specify host or url",
+      message:
+        "Expected credentials data to be an array of configurations, but it is not.",
    },
  );
 });

+test("getCredentials throws error when credential is not an object", async (t) => {
+  const testCredentials = [["foo"], [null]].map(toEncodedJSON);
+
+  for (const testCredential of testCredentials) {
+    t.throws(
+      () =>
+        startProxyExports.getCredentials(
+          getRunnerLogger(true),
+          undefined,
+          testCredential,
+          undefined,
+        ),
+      {
+        message: "Invalid credentials - must be an object",
+      },
+    );
+  }
+});
+
+test("getCredentials throws error when credential missing host and url", async (t) => {
+  const testCredentials = [
+    [{ type: "npm_registry", token: "abc" }],
+    [{ type: "npm_registry", token: "abc", host: null }],
+    [{ type: "npm_registry", token: "abc", url: null }],
+  ].map(toEncodedJSON);
+
+  for (const testCredential of testCredentials) {
+    t.throws(
+      () =>
+        startProxyExports.getCredentials(
+          getRunnerLogger(true),
+          undefined,
+          testCredential,
+          undefined,
+        ),
+      {
+        message: "Invalid credentials - must specify host or url",
+      },
+    );
+  }
+});
+
 test("getCredentials filters by language when specified", async (t) => {
  const mixedCredentials = [
    { type: "npm_registry", host: "npm.pkg.github.com", token: "abc" },
    { type: "maven_repository", host: "maven.pkg.github.com", token: "def" },
    { type: "nuget_feed", host: "nuget.pkg.github.com", token: "ghi" },
+    { type: "goproxy_server", host: "goproxy.example.com", token: "jkl" },
  ];

  const credentials = startProxyExports.getCredentials(
    getRunnerLogger(true),
    undefined,
-    Buffer.from(JSON.stringify(mixedCredentials)).toString("base64"),
+    toEncodedJSON(mixedCredentials),
    "java",
  );
  t.is(credentials.length, 1);
@@ -67,10 +114,9 @@ test("getCredentials returns all credentials when no language specified", async
    { type: "npm_registry", host: "npm.pkg.github.com", token: "abc" },
    { type: "maven_repository", host: "maven.pkg.github.com", token: "def" },
    { type: "nuget_feed", host: "nuget.pkg.github.com", token: "ghi" },
+    { type: "goproxy_server", host: "goproxy.example.com", token: "jkl" },
  ];
-  const credentialsInput = Buffer.from(
-    JSON.stringify(mixedCredentials),
-  ).toString("base64");
+  const credentialsInput = toEncodedJSON(mixedCredentials);

  const credentials = startProxyExports.getCredentials(
    getRunnerLogger(true),
@@ -78,7 +124,7 @@ test("getCredentials returns all credentials when no language specified", async
    credentialsInput,
    undefined,
  );
-  t.is(credentials.length, 3);
+  t.is(credentials.length, mixedCredentials.length);
 });

 test("getCredentials throws an error when non-printable characters are used", async (t) => {
@@ -27,6 +27,15 @@ const LANGUAGE_TO_REGISTRY_TYPE: Record<Language, string> = {
  swift: "",
 } as const;

+/**
+ * Checks that `value` is neither `undefined` nor `null`.
+ * @param value The value to test.
+ * @returns Narrows the type of `value` to exclude `undefined` and `null`.
+ */
+function isDefined<T>(value: T | null | undefined): value is T {
+  return value !== undefined && value !== null;
+}
+
 // getCredentials returns registry credentials from action inputs.
 // It prefers `registries_credentials` over `registry_secrets`.
 // If neither is set, it returns an empty array.
@@ -63,17 +72,28 @@ export function getCredentials(
    throw new ConfigurationError("Invalid credentials format.");
  }

+  // Check that the parsed data is indeed an array.
+  if (!Array.isArray(parsed)) {
+    throw new ConfigurationError(
+      "Expected credentials data to be an array of configurations, but it is not.",
+    );
+  }
+
  const out: Credential[] = [];
  for (const e of parsed) {
+    if (e === null || typeof e !== "object") {
+      throw new ConfigurationError("Invalid credentials - must be an object");
+    }
+
    // Mask credentials to reduce chance of accidental leakage in logs.
-    if (e.password !== undefined) {
+    if (isDefined(e.password)) {
      core.setSecret(e.password);
    }
-    if (e.token !== undefined) {
+    if (isDefined(e.token)) {
      core.setSecret(e.token);
    }

-    if (e.url === undefined && e.host === undefined) {
+    if (!isDefined(e.url) && !isDefined(e.host)) {
      // The proxy needs one of these to work. If both are defined, the url has the precedence.
      throw new ConfigurationError(
        "Invalid credentials - must specify host or url",
@@ -3,8 +3,9 @@ import * as path from "path";

 import test from "ava";

+import { Feature } from "./feature-flags";
 import { getRunnerLogger, Logger } from "./logging";
-import { setupTests } from "./testing-utils";
+import { createFeatures, setupTests } from "./testing-utils";
 import * as uploadLib from "./upload-lib";
 import { GitHubVariant, initializeEnvironment, withTmpDir } from "./util";

@@ -444,6 +445,144 @@ test("shouldShowCombineSarifFilesDeprecationWarning when environment variable is
  );
 });

+test("throwIfCombineSarifFilesDisabled when on dotcom with feature flag", async (t) => {
+  await t.throwsAsync(
+    uploadLib.throwIfCombineSarifFilesDisabled(
+      [createMockSarif("abc", "def"), createMockSarif("abc", "def")],
+      createFeatures([Feature.DisableCombineSarifFiles]),
+      {
+        type: GitHubVariant.DOTCOM,
+      },
+    ),
+  );
+});
+
+test("throwIfCombineSarifFilesDisabled when on dotcom without feature flag", async (t) => {
+  await t.notThrowsAsync(
+    uploadLib.throwIfCombineSarifFilesDisabled(
+      [createMockSarif("abc", "def"), createMockSarif("abc", "def")],
+      createFeatures([]),
+      {
+        type: GitHubVariant.DOTCOM,
+      },
+    ),
+  );
+});
+
+test("throwIfCombineSarifFilesDisabled when on GHES 3.13", async (t) => {
+  await t.notThrowsAsync(
+    uploadLib.throwIfCombineSarifFilesDisabled(
+      [createMockSarif("abc", "def"), createMockSarif("abc", "def")],
+      createFeatures([]),
+      {
+        type: GitHubVariant.GHES,
+        version: "3.13.2",
+      },
+    ),
+  );
+});
+
+test("throwIfCombineSarifFilesDisabled when on GHES 3.14", async (t) => {
+  await t.notThrowsAsync(
+    uploadLib.throwIfCombineSarifFilesDisabled(
+      [createMockSarif("abc", "def"), createMockSarif("abc", "def")],
+      createFeatures([]),
+      {
+        type: GitHubVariant.GHES,
+        version: "3.14.0",
+      },
+    ),
+  );
+});
+
+test("throwIfCombineSarifFilesDisabled when on GHES 3.17", async (t) => {
+  await t.notThrowsAsync(
+    uploadLib.throwIfCombineSarifFilesDisabled(
+      [createMockSarif("abc", "def"), createMockSarif("abc", "def")],
+      createFeatures([]),
+      {
+        type: GitHubVariant.GHES,
+        version: "3.17.0",
+      },
+    ),
+  );
+});
+
+test("throwIfCombineSarifFilesDisabled when on GHES 3.18 pre", async (t) => {
+  await t.throwsAsync(
+    uploadLib.throwIfCombineSarifFilesDisabled(
+      [createMockSarif("abc", "def"), createMockSarif("abc", "def")],
+      createFeatures([]),
+      {
+        type: GitHubVariant.GHES,
+        version: "3.18.0.pre1",
+      },
+    ),
+  );
+});
+
+test("throwIfCombineSarifFilesDisabled when on GHES 3.18 alpha", async (t) => {
+  await t.throwsAsync(
+    uploadLib.throwIfCombineSarifFilesDisabled(
+      [createMockSarif("abc", "def"), createMockSarif("abc", "def")],
+      createFeatures([]),
+      {
+        type: GitHubVariant.GHES,
+        version: "3.18.0-alpha.1",
+      },
+    ),
+  );
+});
+
+test("throwIfCombineSarifFilesDisabled when on GHES 3.18", async (t) => {
+  await t.throwsAsync(
+    uploadLib.throwIfCombineSarifFilesDisabled(
+      [createMockSarif("abc", "def"), createMockSarif("abc", "def")],
+      createFeatures([]),
+      {
+        type: GitHubVariant.GHES,
+        version: "3.18.0",
+      },
+    ),
+  );
+});
+
+test("throwIfCombineSarifFilesDisabled with only 1 run", async (t) => {
+  await t.notThrowsAsync(
+    uploadLib.throwIfCombineSarifFilesDisabled(
+      [createMockSarif("abc", "def")],
+      createFeatures([Feature.DisableCombineSarifFiles]),
+      {
+        type: GitHubVariant.DOTCOM,
+      },
+    ),
+  );
+});
+
+test("throwIfCombineSarifFilesDisabled with distinct categories", async (t) => {
+  await t.notThrowsAsync(
+    uploadLib.throwIfCombineSarifFilesDisabled(
+      [createMockSarif("abc", "def"), createMockSarif("def", "def")],
+      createFeatures([Feature.DisableCombineSarifFiles]),
+      {
+        type: GitHubVariant.DOTCOM,
+      },
+    ),
+  );
+});
+
+test("throwIfCombineSarifFilesDisabled with distinct tools", async (t) => {
+  await t.notThrowsAsync(
+    uploadLib.throwIfCombineSarifFilesDisabled(
+      [createMockSarif("abc", "abc"), createMockSarif("abc", "def")],
+      createFeatures([Feature.DisableCombineSarifFiles]),
+      {
+        type: GitHubVariant.DOTCOM,
+      },
+    ),
+  );
+});
+
 test("shouldConsiderConfigurationError correctly detects configuration errors", (t) => {
  const error1 = [
    "CodeQL analyses from advanced configurations cannot be processed when the default setup is enabled",
@@ -16,7 +16,7 @@ import { CodeQL, getCodeQL } from "./codeql";
 import { getConfig } from "./config-utils";
 import { readDiffRangesJsonFile } from "./diff-informed-analysis-utils";
 import { EnvVar } from "./environment";
-import { FeatureEnablement } from "./feature-flags";
+import { Feature, FeatureEnablement } from "./feature-flags";
 import * as fingerprints from "./fingerprints";
 import * as gitUtils from "./git-utils";
 import { initCodeQL } from "./init";
@@ -145,6 +145,58 @@ export async function shouldShowCombineSarifFilesDeprecationWarning(
  );
 }

+export async function throwIfCombineSarifFilesDisabled(
+  sarifObjects: util.SarifFile[],
+  features: FeatureEnablement,
+  githubVersion: GitHubVersion,
+) {
+  if (
+    !(await shouldDisableCombineSarifFiles(
+      sarifObjects,
+      features,
+      githubVersion,
+    ))
+  ) {
+    return;
+  }
+
+  // TODO: Update this changelog URL to the correct one when it's published.
+  const deprecationMoreInformationMessage =
+    "For more information, see https://github.blog/changelog/2024-05-06-code-scanning-will-stop-combining-runs-from-a-single-upload";
+
+  throw new ConfigurationError(
+    `The CodeQL Action does not support uploading multiple SARIF runs with the same category. Please update your workflow to upload a single run per category. ${deprecationMoreInformationMessage}`,
+  );
+}
+
+// Checks whether combining SARIF files should be disabled.
+async function shouldDisableCombineSarifFiles(
+  sarifObjects: util.SarifFile[],
+  features: FeatureEnablement,
+  githubVersion: GitHubVersion,
+) {
+  if (githubVersion.type === GitHubVariant.GHES) {
+    // Never block on GHES versions before 3.18.
+    if (semver.lt(githubVersion.version, "3.18.0-0")) {
+      return false;
+    }
+  } else {
+    // Never block when the feature flag is disabled.
+    if (!(await features.getValue(Feature.DisableCombineSarifFiles))) {
+      return false;
+    }
+  }
+
+  if (areAllRunsUnique(sarifObjects)) {
+    // If all runs are unique, we can safely combine them.
+    return false;
+  }
+
+  // Combining SARIF files is not supported and Code Scanning will return an
+  // error if multiple runs with the same category are uploaded.
+  return true;
+}
+
 // Takes a list of paths to sarif files and combines them together using the
 // CLI `github merge-results` command when all SARIF files are produced by
 // CodeQL. Otherwise, it will fall back to combining the files in the action.
@@ -167,11 +219,17 @@ async function combineSarifFilesUsingCLI(
  const deprecationWarningMessage =
    gitHubVersion.type === GitHubVariant.GHES
      ? "and will be removed in GitHub Enterprise Server 3.18"
-      : "and will be removed on June 4, 2025";
+      : "and will be removed in July 2025";
  const deprecationMoreInformationMessage =
    "For more information, see https://github.blog/changelog/2024-05-06-code-scanning-will-stop-combining-runs-from-a-single-upload";

  if (!areAllRunsProducedByCodeQL(sarifObjects)) {
+    await throwIfCombineSarifFilesDisabled(
+      sarifObjects,
+      features,
+      gitHubVersion,
+    );
+
    logger.debug(
      "Not all SARIF files were produced by CodeQL. Merging files in the action.",
    );
@@ -235,6 +293,12 @@ async function combineSarifFilesUsingCLI(
      ToolsFeature.SarifMergeRunsFromEqualCategory,
    ))
  ) {
+    await throwIfCombineSarifFilesDisabled(
+      sarifObjects,
+      features,
+      gitHubVersion,
+    );
+
    logger.warning(
      "The CodeQL CLI does not support merging SARIF files. Merging files in the action.",
    );
Author	SHA1	Message	Date
Koen Vlaswinkel	f53ec7c550	Merge pull request #2961 from github/koesie10/disable-combine-sarif-files-ghes Unconditionally disable combining SARIF files for GHES 3.18	2025-07-08 10:01:06 +02:00
Chuan-kai Lin	624d0bca90	Merge pull request #2945 from github/cklin/overlay-analysis Basic support for overlay PR analysis	2025-07-07 08:41:24 -07:00
Chuan-kai Lin	ec836d6b8a	build: refresh js files	2025-07-07 08:15:20 -07:00
Chuan-kai Lin	95a1b7e2bf	Add getOverlayDatabaseMode() tests	2025-07-07 08:14:41 -07:00
Chuan-kai Lin	8c5122ea75	Add getPullRequestBranches() tests	2025-07-07 08:13:06 -07:00
Koen Vlaswinkel	aafbeb29bc	Unconditionally disable combining SARIF files for GHES 3.18	2025-07-04 15:24:36 +02:00
Chuan-kai Lin	6a51e635a5	Add "overlay" to SARIF incrementalMode run property	2025-07-03 12:35:25 -07:00
Chuan-kai Lin	42835b3971	Override cleanup-level for overlay-base database	2025-07-03 12:35:25 -07:00
Chuan-kai Lin	2fc04c80cc	Download overlay-base database from actions cache	2025-07-03 12:35:25 -07:00
Chuan-kai Lin	b95402dae1	Extract checkOverlayBaseDatabase()	2025-07-03 12:35:24 -07:00
Chuan-kai Lin	6ca06f41c4	Upload overlay-base database to actions cache	2025-07-03 12:35:24 -07:00
Chuan-kai Lin	d42ce71087	Add AugmentationProperties.useOverlayDatabaseCaching This commit adds useOverlayDatabaseCaching to AugmentationProperties to indicate whether the action should upload overlay-base databases to the actions cache and to download a cached overlay-base database when creating an overlay database.	2025-07-03 12:35:24 -07:00
Chuan-kai Lin	b4425372ef	Limit OverlayAnalysis to internal repos	2025-07-03 12:35:24 -07:00
Chuan-kai Lin	93e8729640	getOverlayDatabaseMode: use Feature.OverlayAnalysis This commit changes getOverlayDatabaseMode so that, when Feature.OverlayAnalysis is enabled, it calculates the overlay database mode automatically based on analysis metadata. If we are analyzing the default branch, use OverlayBase, and if we are analyzing a PR, use Overlay. If CODEQL_OVERLAY_DATABASE_MODE is set to a valid overlay database mode, that environment variable still takes precedence.	2025-07-03 12:35:24 -07:00
Chuan-kai Lin	da758dc0cd	Add Feature.OverlayAnalysis	2025-07-03 12:35:24 -07:00
Chuan-kai Lin	60a2a7d623	Add isAnalyzingPullRequest()	2025-07-03 12:35:24 -07:00
Chuan-kai Lin	a336faa497	databaseInitCluster: use overlayDatabaseMode from config This commit changes databaseInitCluster() to use overlayDatabaseMode from AugmentationProperties instead of the overlayDatabaseMode parameter. There is no behavior change because both overlayDatabaseMode values are computed the same way. The commit then cleans up the overlayDatabaseMode parameter and the code paths that feed into it.	2025-07-03 12:35:24 -07:00
Chuan-kai Lin	ee8a8c4e0b	config-utils: populate getOverlayDatabaseMode() This commit populates getOverlayDatabaseMode() in config-utils with the same code from getOverlayDatabaseMode() in init.	2025-07-03 12:35:24 -07:00
Chuan-kai Lin	9022c7382c	Add AugmentationProperties.overlayDatabaseMode This commit adds overlayDatabaseMode to AugmentationProperties and creates a placeholder getOverlayDatabaseMode() function, with the necessary inputs, to populate it.	2025-07-03 12:35:24 -07:00
Michael B. Gale	b69421388d	Merge pull request #2956 from github/mbg/start-proxy/validation-improvements Improve JSON validation in `start-proxy` action	2025-07-03 12:23:56 +01:00
Koen Vlaswinkel	33f84897c3	Merge pull request #2959 from github/koesie10/remove-combine-runs Remove support for combining SARIF runs with non-unique categories	2025-07-02 14:34:01 +02:00
Koen Vlaswinkel	612df8d91c	Remove support for combining SARIF runs with non-unique categories	2025-07-01 15:20:28 +02:00
Michael B. Gale	dcc1a6637b	Merge pull request #2958 from github/mergeback/v3.29.2-to-main-181d5eef Mergeback v3.29.2 refs/heads/releases/v3 into main	2025-06-30 14:15:46 +01:00
github-actions[bot]	144d3b8f62	Update checked-in dependencies	2025-06-30 13:02:41 +00:00
github-actions[bot]	6881d2cdc1	Update changelog and version after v3.29.2	2025-06-30 13:01:12 +00:00
Michael B. Gale	9281048a40	Include `goproxy_server` in configuration filtering tests	2025-06-27 14:32:16 +01:00
Michael B. Gale	6b83dc33ed	Check for `null` in addition to `undefined`; extend tests accordingly	2025-06-27 14:32:16 +01:00
Michael B. Gale	ca0540d370	Check that individual proxy configurations are objects	2025-06-27 14:32:16 +01:00
Michael B. Gale	e9938e34d5	Check that proxy configurations are an array	2025-06-27 14:32:15 +01:00