Merge pull request #2069 from github/backport-v2.23.0-e5f05b81d

Merge releases/v3 into releases/v2
Update checked-in dependencies
2026-10-25 00:13:42 +03:00 · 2024-01-08 13:43:00 +00:00 · 2024-01-08 13:12:16 +00:00 · 2024-01-08 13:05:17 +00:00 · 2024-01-08 13:04:05 +00:00 · 2024-01-08 13:04:04 +00:00
368 changed files with 8068 additions and 8610 deletions
@@ -1,12 +1,19 @@
 import argparse
 import json
 import os
-import subprocess
+import configparser

 # Name of the remote
 ORIGIN = 'origin'

-OLDEST_SUPPORTED_MAJOR_VERSION = 2
+script_dir = os.path.dirname(os.path.realpath(__file__))
+grandparent_dir = os.path.dirname(os.path.dirname(script_dir))
+
+config = configparser.ConfigParser()
+with open(os.path.join(grandparent_dir, 'releases.ini')) as stream:
+    config.read_string('[default]\n' + stream.read())
+
+OLDEST_SUPPORTED_MAJOR_VERSION = int(config['default']['OLDEST_SUPPORTED_MAJOR_VERSION'])

 def main():

@@ -16,7 +16,7 @@ runs:
      shell: bash

    - name: Set up Python
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      with:
        python-version: 3.8

@@ -0,0 +1 @@
+OLDEST_SUPPORTED_MAJOR_VERSION=2
@@ -1,5 +1,6 @@
 import argparse
 import datetime
+import re
 from github import Github
 import json
 import os
@@ -174,6 +175,60 @@ def get_today_string():
  today = datetime.datetime.today()
  return '{:%d %b %Y}'.format(today)

+def process_changelog_for_backports(source_branch_major_version, target_branch_major_version):
+
+  # changelog entries can use the following format to indicate
+  # that they only apply to newer versions
+  some_versions_only_regex = re.compile(r'\[v(\d+)\+ only\]')
+
+  output = ''
+
+  with open('CHANGELOG.md', 'r') as f:
+
+    # until we find the first section, just duplicate all lines
+    while True:
+      line = f.readline()
+      if not line:
+        raise Exception('Could not find any change sections in CHANGELOG.md') # EOF
+
+      output += line
+      if line.startswith('## '):
+        line = line.replace(f'## {source_branch_major_version}', f'## {target_branch_major_version}')
+        # we have found the first section, so now handle things differently
+        break
+
+    # found_content tracks whether we hit two headings in a row
+    found_content = False
+    output += '\n'
+    while True:
+      line = f.readline()
+      if not line:
+        break # EOF
+      line = line.rstrip('\n')
+
+      # filter out changenote entries that apply only to newer versions
+      match = some_versions_only_regex.search(line)
+      if match:
+        if int(target_branch_major_version) < int(match.group(1)):
+          continue
+
+      if line.startswith('## '):
+        line = line.replace(f'## {source_branch_major_version}', f'## {target_branch_major_version}')
+        if found_content == False:
+          # we have found two headings in a row, so we need to add the placeholder message.
+          output += 'No user facing changes.\n'
+        found_content = False
+        output += f'\n{line}\n\n'
+      else:
+        if line.strip() != '':
+          found_content = True
+          # we use the original line here, rather than the stripped version
+          # so that we preserve indentation
+          output += line + '\n'
+
+    with open('CHANGELOG.md', 'w') as f:
+      f.write(output)
+
 def update_changelog(version):
  if (os.path.exists('CHANGELOG.md')):
    content = ''
@@ -255,10 +310,13 @@ def main():
    print(f'No commits to merge from {source_branch} to {target_branch}.')
    return

+  # define distinct prefix in order to support specific pr checks on backports
+  branch_prefix = 'update' if is_primary_release else 'backport'
+
  # The branch name is based off of the name of branch being merged into
  # and the SHA of the branch being merged from. Thus if the branch already
  # exists we can assume we don't need to recreate it.
-  new_branch_name = f'update-v{version}-{source_branch_short_sha}'
+  new_branch_name = f'{branch_prefix}-v{version}-{source_branch_short_sha}'
  print(f'Branch name is {new_branch_name}.')

  # Check if the branch already exists. If so we can abort as this script
@@ -321,13 +379,7 @@ def main():

    # Migrate the changelog notes from vLatest version numbers to vOlder version numbers
    print(f'Migrating changelog notes from v{source_branch_major_version} to v{target_branch_major_version}')
-    subprocess.check_output(['sed', '-i', f's/^## {source_branch_major_version}\./## {target_branch_major_version}./g', 'CHANGELOG.md'])
-
-    # Remove changelog notes from all versions that do not apply to the vOlder branch
-    print(f'Removing changelog notes that do not apply to v{target_branch_major_version}')
-    for v in range(int(source_branch_major_version), int(target_branch_major_version), -1):
-      print(f'Removing changelog notes that are tagged [v{v}+ only\]')
-      subprocess.check_output(['sed', '-i', f'/^- \[v{v}+ only\]/d', 'CHANGELOG.md'])
+    process_changelog_for_backports(source_branch_major_version, target_branch_major_version)

    # Amend the commit generated by `npm version` to update the CHANGELOG
    run_git('add', 'CHANGELOG.md')
@@ -35,12 +35,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -59,11 +57,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'true'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - id: init
@@ -39,12 +39,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -63,11 +61,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -39,12 +39,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -63,11 +61,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -45,12 +45,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -69,11 +67,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -118,5 +112,4 @@ jobs:
          }
          core.info('Finished config export tests.');
    env:
-      CODEQL_PASS_CONFIG_TO_CLI: true
      CODEQL_ACTION_TEST_MODE: true
@@ -39,12 +39,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -63,11 +61,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - name: Test setup
@@ -35,12 +35,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -59,11 +57,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - name: Test setup
@@ -39,12 +39,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -63,11 +61,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - name: Test setup
@@ -51,12 +51,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -75,11 +73,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -39,12 +39,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -63,11 +61,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -35,12 +35,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -59,11 +57,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -25,12 +25,6 @@ jobs:
    strategy:
      matrix:
        include:
-        - os: ubuntu-latest
-          version: stable-20220908
-        - os: macos-latest
-          version: stable-20220908
-        - os: windows-latest
-          version: stable-20220908
        - os: ubuntu-latest
          version: stable-20221211
        - os: macos-latest
@@ -81,12 +75,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -105,11 +97,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -35,12 +35,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -59,14 +57,10 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: actions/setup-go@v4
+    - uses: actions/setup-go@v5
      with:
      # We need a Go version that ships with statically linked binaries on Linux
        go-version: '>=1.21.0'
@@ -75,7 +69,7 @@ jobs:
        languages: go
        tools: ${{ steps.prepare-test.outputs.tools-url }}
  # Deliberately change Go after the `init` step
-    - uses: actions/setup-go@v4
+    - uses: actions/setup-go@v5
      with:
        go-version: '1.20'
    - name: Build code
@@ -35,12 +35,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -59,14 +57,10 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: actions/setup-go@v4
+    - uses: actions/setup-go@v5
      with:
      # We need a Go version that ships with statically linked binaries on Linux
        go-version: '>=1.21.0'
@@ -25,10 +25,6 @@ jobs:
    strategy:
      matrix:
        include:
-        - os: ubuntu-latest
-          version: stable-20220908
-        - os: macos-latest
-          version: stable-20220908
        - os: ubuntu-latest
          version: stable-20221211
        - os: macos-latest
@@ -65,12 +61,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -89,14 +83,10 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: actions/setup-go@v4
+    - uses: actions/setup-go@v5
      with:
        go-version: ~1.21.1
    - uses: ./../action/init
@@ -25,10 +25,6 @@ jobs:
    strategy:
      matrix:
        include:
-        - os: ubuntu-latest
-          version: stable-20220908
-        - os: macos-latest
-          version: stable-20220908
        - os: ubuntu-latest
          version: stable-20221211
        - os: macos-latest
@@ -65,12 +61,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -89,14 +83,10 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: actions/setup-go@v4
+    - uses: actions/setup-go@v5
      with:
        go-version: ~1.21.1
    - uses: ./../action/init
@@ -25,10 +25,6 @@ jobs:
    strategy:
      matrix:
        include:
-        - os: ubuntu-latest
-          version: stable-20220908
-        - os: macos-latest
-          version: stable-20220908
        - os: ubuntu-latest
          version: stable-20221211
        - os: macos-latest
@@ -65,12 +61,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -89,14 +83,10 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: actions/setup-go@v4
+    - uses: actions/setup-go@v5
      with:
        go-version: ~1.21.1
    - uses: ./../action/init
@@ -52,12 +52,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -76,11 +74,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - name: Init with registries
@@ -39,12 +39,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -63,11 +61,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - name: Move codeql-action
@@ -35,12 +35,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -59,11 +57,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -25,10 +25,6 @@ jobs:
    strategy:
      matrix:
        include:
-        - os: ubuntu-latest
-          version: stable-20220908
-        - os: macos-latest
-          version: stable-20220908
        - os: ubuntu-latest
          version: stable-20221211
        - os: macos-latest
@@ -65,12 +61,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -89,11 +83,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -51,12 +51,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -75,11 +73,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -119,6 +113,4 @@ jobs:
          exit 1
        fi
    env:
-      CODEQL_PASS_CONFIG_TO_CLI: true
-
      CODEQL_ACTION_TEST_MODE: true
@@ -51,12 +51,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -75,11 +73,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -51,12 +51,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -75,11 +73,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -51,12 +51,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -75,11 +73,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -25,12 +25,6 @@ jobs:
    strategy:
      matrix:
        include:
-        - os: ubuntu-latest
-          version: stable-20220908
-        - os: macos-latest
-          version: stable-20220908
-        - os: windows-latest
-          version: stable-20220908
        - os: ubuntu-latest
          version: stable-20221211
        - os: macos-latest
@@ -81,12 +75,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -105,11 +97,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -57,12 +57,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -81,11 +79,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -35,12 +35,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -59,11 +57,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - name: Set up Ruby
@@ -45,12 +45,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -69,11 +67,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -25,10 +25,6 @@ jobs:
    strategy:
      matrix:
        include:
-        - os: ubuntu-latest
-          version: stable-20220908
-        - os: macos-latest
-          version: stable-20220908
        - os: ubuntu-latest
          version: stable-20221211
        - os: macos-latest
@@ -65,12 +61,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -89,11 +83,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -45,12 +45,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -69,11 +67,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -39,12 +39,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -63,11 +61,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: actions/checkout@v4
@@ -45,12 +45,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -69,11 +67,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -35,12 +35,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -59,11 +57,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - name: Test setup
@@ -35,12 +35,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -59,11 +57,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - name: Fetch a CodeQL bundle
@@ -35,12 +35,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -59,11 +57,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -25,8 +25,6 @@ jobs:
    strategy:
      matrix:
        include:
-        - os: ubuntu-latest
-          version: stable-20220908
        - os: ubuntu-latest
          version: stable-20221211
        - os: ubuntu-latest
@@ -49,12 +47,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -73,11 +69,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -39,12 +39,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -63,11 +61,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - uses: ./../action/init
@@ -25,12 +25,6 @@ jobs:
    strategy:
      matrix:
        include:
-        - os: ubuntu-latest
-          version: stable-20220908
-        - os: macos-latest
-          version: stable-20220908
-        - os: windows-latest
-          version: stable-20220908
        - os: ubuntu-latest
          version: stable-20221211
        - os: macos-latest
@@ -81,12 +75,10 @@ jobs:
    runs-on: ${{ matrix.os }}
    steps:
    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
      if: >-
        matrix.os == 'macos-latest' && (

-        matrix.version == 'stable-20220908' ||
-
        matrix.version == 'stable-20221211' ||

        matrix.version == 'stable-20230418' ||
@@ -105,11 +97,7 @@ jobs:
        version: ${{ matrix.version }}
        use-all-platform-bundle: 'false'
    - name: Set environment variable for Swift enablement
-      if: >-
-        runner.os != 'Windows' && (
-            matrix.version == '20220908' ||
-            matrix.version == '20221211'
-        )
+      if: runner.os != 'Windows' && matrix.version == '20221211'
      shell: bash
      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
    - name: Delete original checkout
@@ -3,7 +3,6 @@
 name: Code-Scanning config CLI tests
 env:
  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  CODEQL_PASS_CONFIG_TO_CLI: true

 on:
  push:
@@ -204,15 +203,3 @@ jobs:
        packs: + codeql/javascript-queries
        config-file-test: .github/codeql/other-config-properties.yml
        tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-    - name: Config not generated when env var is not set
-      if: success() || failure()
-      env:
-        CODEQL_PASS_CONFIG_TO_CLI: false
-      uses: ./../action/.github/actions/check-codescanning-config
-      with:
-        expected-config-file-contents: ""
-        languages: javascript
-        packs: + codeql/javascript-queries
-        config-file-test: .github/codeql/other-config-properties.yml
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
@@ -39,20 +39,9 @@ jobs:
        uses: ./.github/actions/prepare-test
        with:
          version: latest
-      - uses: actions/setup-go@v4
+      - uses: actions/setup-go@v5
        with:
          go-version: ^1.13.1
-      - name: Setup Python on MacOS
-        uses: actions/setup-python@v4
-        if: |
-          matrix.os == 'macos-latest' && (
-          matrix.version == 'stable-20220908' ||
-          matrix.version == 'stable-20221211' ||
-          matrix.version == 'stable-20230418' ||
-          matrix.version == 'stable-v2.13.5' ||
-          matrix.version == 'stable-v2.14.6')
-        with:
-          python-version: '3.11'
      - uses: ./../action/init
        with:
          tools: ${{ steps.prepare-test.outputs.tools-url }}
@@ -25,7 +25,6 @@ jobs:
        - ubuntu-latest
        - macos-latest
        version:
-        - stable-20220908
        - stable-20221211
        - stable-20230418
        - stable-v2.13.5
@@ -46,14 +45,13 @@ jobs:
        uses: ./.github/actions/prepare-test
        with:
          version: ${{ matrix.version }}
-      - uses: actions/setup-go@v4
+      - uses: actions/setup-go@v5
        with:
          go-version: ^1.13.1
      - name: Setup Python on MacOS
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
        if: |
          matrix.os == 'macos-latest' && (
-          matrix.version == 'stable-20220908' ||
          matrix.version == 'stable-20221211' ||
          matrix.version == 'stable-20230418' ||
          matrix.version == 'stable-v2.13.5' ||
@@ -86,7 +84,7 @@ jobs:
      - name: Check expected artifacts exist
        shell: bash
        run: |
-          VERSIONS="stable-20220908 stable-20221211 stable-20230418 stable-v2.13.5 stable-v2.14.6 default latest nightly-latest"
+          VERSIONS="stable-20221211 stable-20230418 stable-v2.13.5 stable-v2.14.6 default latest nightly-latest"
          LANGUAGES="cpp csharp go java javascript python"
          for version in $VERSIONS; do
            for os in ubuntu-latest macos-latest; do
@@ -133,8 +133,8 @@ jobs:
          # Update the version number ready for the next release
          npm version patch --no-git-tag-version

-          # Update the changelog
-          perl -i -pe 's/^/## \[UNRELEASED\]\n\nNo user facing changes.\n\n/ if($.==5)' CHANGELOG.md
+          # Update the changelog, adding a new version heading directly above the most recent existing one
+          awk '!f && /##/{print "'"## [UNRELEASED]\n\nNo user facing changes.\n"'"; f=1}1' CHANGELOG.md > temp && mv temp CHANGELOG.md
          git add .
          git commit -m "Update changelog and version after ${VERSION}"

@@ -15,6 +15,10 @@ jobs:
    runs-on: ubuntu-latest
    timeout-minutes: 45

+    strategy:
+      matrix:
+        node-types-version: [16.11, current] # we backport this matrix job in order to maintain the same check names
+
    steps:
      - name: Checkout
        uses: actions/checkout@v4
@@ -22,7 +26,30 @@ jobs:
      - name: Lint
        run: npm run-script lint

+      - name: Update version of @types/node
+        if: matrix.node-types-version != 'current'
+        env:
+          NODE_TYPES_VERSION: ${{ matrix.node-types-version }}
+        run: |
+          # Export `NODE_TYPES_VERSION` so it's available to jq
+          export NODE_TYPES_VERSION="${NODE_TYPES_VERSION}"
+          contents=$(jq '.devDependencies."@types/node" = env.NODE_TYPES_VERSION' package.json)
+          echo "${contents}" > package.json
+          # Usually we run `npm install` on macOS to ensure that we pick up macOS-only dependencies.
+          # However we're not checking in the updated lockfile here, so it's fine to run
+          # `npm install` on Linux.
+          npm install
+
+          if [ ! -z "$(git status --porcelain)" ]; then
+            git config --global user.email "github-actions@github.com"
+            git config --global user.name "github-actions[bot]"
+            # The period in `git add --all .` ensures that we stage deleted files too.
+            git add --all .
+            git commit -m "Use @types/node=${NODE_TYPES_VERSION}"
+          fi
+
      - name: Check generated JS
+        if: matrix.node-types-version != 'current' # we do not need to test the newer node on the v2 branch
        run: .github/workflows/script/check-js.sh

  check-node-modules:
@@ -45,7 +72,7 @@ jobs:
        uses: actions/checkout@v4

      - name: Set up Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
        with:
          python-version: 3.11

@@ -69,18 +96,6 @@ jobs:
    timeout-minutes: 45

    steps:
-      - name: Setup Python on MacOS
-        uses: actions/setup-python@v4
-        if: |
-          matrix.os == 'macos-latest' && (
-          matrix.version == 'stable-20220908' ||
-          matrix.version == 'stable-20221211' ||
-          matrix.version == 'stable-20230418' ||
-          matrix.version == 'stable-v2.13.5' ||
-          matrix.version == 'stable-v2.14.6')
-        with:
-          python-version: '3.11'
-
      - uses: actions/checkout@v4
      - name: npm test
        run: |
@@ -88,3 +103,44 @@ jobs:
          # we won't be able to find them on Windows.
          npm config set script-shell bash
          npm test
+
+  check-node-version:
+    if: ${{ github.event.pull_request }}
+    name: Check Action Node versions
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+    env:
+      BASE_REF: ${{ github.base_ref }}
+
+    steps:
+      - uses: actions/checkout@v4
+      - id: head-version
+        name: Verify all Actions use the same Node version
+        run: |
+          NODE_VERSION=$(find . -name "action.yml" -exec yq -e '.runs.using' {} \; | grep node | sort | uniq)
+          echo "NODE_VERSION: ${NODE_VERSION}"
+          if [[ $(echo "$NODE_VERSION" | wc -l) -gt 1 ]]; then
+            echo "::error::More than one node version used in 'action.yml' files."
+            exit 1
+          fi
+          echo "node_version=${NODE_VERSION}" >> $GITHUB_OUTPUT
+
+      - id: checkout-base
+        name: 'Backport: Check out base ref'
+        if: ${{ startsWith(github.head_ref, 'backport-') }}
+        uses: actions/checkout@v4
+        with:
+          ref: ${{ env.BASE_REF }}
+
+      - name: 'Backport: Verify Node versions unchanged'
+        if: steps.checkout-base.outcome == 'success'
+        env:
+          HEAD_VERSION: ${{ steps.head-version.outputs.node_version }}
+        run: |
+          BASE_VERSION=$(find . -name "action.yml" -exec yq -e '.runs.using' {} \; | grep node | sort | uniq)
+          echo "HEAD_VERSION: ${HEAD_VERSION}"
+          echo "BASE_VERSION: ${BASE_VERSION}"
+          if [[ "$BASE_VERSION" != "$HEAD_VERSION" ]]; then
+            echo "::error::Cannot change the Node version of an Action in a backport PR."
+            exit 1
+          fi
@@ -36,18 +36,6 @@ jobs:
      PYTHON_VERSION: ${{ matrix.python_version }}

    steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v4
-      if: |
-        matrix.os == 'macos-latest' && (
-        matrix.version == 'stable-20220908' ||
-        matrix.version == 'stable-20221211' ||
-        matrix.version == 'stable-20230418' ||
-        matrix.version == 'stable-v2.13.5' ||
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-
    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
    - uses: actions/checkout@v4

@@ -151,7 +139,7 @@ jobs:
    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
    - uses: actions/checkout@v4

-    - uses: actions/setup-python@v4
+    - uses: actions/setup-python@v5
      with:
        python-version: ${{ matrix.python_version }}

@@ -18,7 +18,7 @@ jobs:
    runs-on: windows-latest

    steps:
-    - uses: actions/setup-python@v4
+    - uses: actions/setup-python@v5
      with:
        python-version: 3.12

@@ -31,7 +31,7 @@ jobs:
          npm run build

      - name: Set up Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
        with:
          python-version: 3.11

@@ -2,6 +2,11 @@
 # Update the required checks based on the current branch.
 # Typically, this will be main.

+SCRIPT_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
+REPO_DIR="$(dirname "$SCRIPT_DIR")"
+GRANDPARENT_DIR="$(dirname "$REPO_DIR")"
+source "$GRANDPARENT_DIR/releases.ini"
+
 if ! gh auth status 2>/dev/null; then
  gh auth status
  echo "Failed: Not authorized. This script requires admin access to github/codeql-action through the gh CLI."
@@ -29,7 +34,22 @@ echo "$CHECKS" | jq

 echo "{\"contexts\": ${CHECKS}}" > checks.json

-for BRANCH in main releases/v2; do
+echo "Updating main"
+gh api --silent -X "PATCH" "repos/github/codeql-action/branches/main/protection/required_status_checks" --input checks.json
+
+# list all branchs on origin remote matching releases/v*
+BRANCHES="$(git ls-remote --heads origin 'releases/v*' | sed 's?.*refs/heads/??' | sort -V)"
+
+for BRANCH in $BRANCHES; do
+
+  # strip exact 'releases/v' prefix from $BRANCH using count of characters
+  VERSION="${BRANCH:10}"
+
+  if [ "$VERSION" -lt "$OLDEST_SUPPORTED_MAJOR_VERSION" ]; then
+    echo "Skipping $BRANCH"
+    continue
+  fi
+
  echo "Updating $BRANCH"
  gh api --silent -X "PATCH" "repos/github/codeql-action/branches/$BRANCH/protection/required_status_checks" --input checks.json
 done
@@ -14,7 +14,7 @@ jobs:

    steps:
      - name: Setup Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
        with:
          python-version: "3.7"
      - name: Checkout CodeQL Action
@@ -2,10 +2,25 @@

 See the [releases page](https://github.com/github/codeql-action/releases) for the relevant changes to the CodeQL CLI and language packs.

-## [UNRELEASED]
+Note that the only difference between `v2` and `v3` of the CodeQL Action is the node version they support, with `v3` running on node 20 while we continue to release `v2` to support running on node 16. For example `3.22.11` was the first `v3` release and is functionally identical to `2.22.11`. This approach ensures an easy way to track exactly which features are included in different versions, indicated by the minor and patch version numbers.
+
+## 2.23.0 - 08 Jan 2024
+
+- We are rolling out a feature in January 2024 that will disable Python dependency installation by default for all users. This improves the speed of analysis while having only a very minor impact on results. You can override this behavior by setting `CODEQL_ACTION_DISABLE_PYTHON_DEPENDENCY_INSTALLATION=false` in your workflow, however we plan to remove this ability in future versions of the CodeQL Action. [#2031](https://github.com/github/codeql-action/pull/2031)
+- The CodeQL Action now requires CodeQL version 2.11.6 or later. For more information, see [the corresponding changelog entry for CodeQL Action version 2.22.7](#2227---16-nov-2023). [#2009](https://github.com/github/codeql-action/pull/2009)
+
+## 2.22.12 - 22 Dec 2023
+
+- Update default CodeQL bundle version to 2.15.5. [#2047](https://github.com/github/codeql-action/pull/2047)
+
+## 2.22.11 - 13 Dec 2023

 No user facing changes.

+## 2.22.10 - 12 Dec 2023
+
+- Update default CodeQL bundle version to 2.15.4. [#2016](https://github.com/github/codeql-action/pull/2016)
+
 ## 2.22.9 - 07 Dec 2023

 No user facing changes.
@@ -76,7 +76,9 @@ Since the `codeql-action` runs most of its testing through individual Actions wo

 1. By default, this script retrieves the checks from the latest SHA on `main`, so make sure that your `main` branch is up to date.
 2. Run the script. If there's a reason to, you can pass in a different SHA as a CLI argument.
-3. After running, go to the [branch protection rules settings page](https://github.com/github/codeql-action/settings/branches) and validate that the rules for `main`, `v1`, and `v2` have been updated.
+3. After running, go to the [branch protection rules settings page](https://github.com/github/codeql-action/settings/branches) and validate that the rules for `main`, `v2`, and `v3` have been updated.
+
+Note that any updates to checks need to be backported to the `releases/v2` branch, in order to maintain the same set of names for required checks.

 ## Deprecating a CodeQL version (write access required)

@@ -111,8 +113,8 @@ To deprecate an older version of the Action:
   - Add a changelog note announcing the deprecation.
   - Implement an Actions warning for customers using the deprecated version.
 1. Wait for the deprecation period to pass.
-1. Upgrade the Actions warning for customers using the deprecated version to a non-fatal error, and mention that this version of the Action is no longer supported. 
-1. Make a PR to bump the `OLDEST_SUPPORTED_MAJOR_VERSION` in [release-branches.py](.github/actions/release-branches/release-branches.py).  Once this PR is merged, the release process will no longer backport changes to the deprecated release version.
+1. Upgrade the Actions warning for customers using the deprecated version to a non-fatal error, and mention that this version of the Action is no longer supported.
+1. Make a PR to bump the `OLDEST_SUPPORTED_MAJOR_VERSION` in [releases.ini](.github/releases.ini).  Once this PR is merged, the release process will no longer backport changes to the deprecated release version.

 ## Resources

@@ -84,6 +84,6 @@ outputs:
  sarif-id:
    description: The ID of the uploaded SARIF file.
 runs:
-  using: "node16"
+  using: node16
  main: "../lib/analyze-action.js"
  post: "../lib/analyze-action-post.js"
@@ -13,5 +13,5 @@ inputs:
      $GITHUB_WORKSPACE as its working directory.
    required: false
 runs:
-  using: 'node16'
+  using: node16
  main: '../lib/autobuild-action.js'
@@ -109,6 +109,6 @@ outputs:
  codeql-path:
    description: The path of the CodeQL binary used for analysis
 runs:
-  using: 'node16'
+  using: node16
  main: '../lib/init-action.js'
  post: '../lib/init-action-post.js'
@@ -1,84 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.includeAndExcludeAnalysisPaths = exports.printPathFiltersWarning = exports.legalWindowsPathCharactersRegex = void 0;
-const path = __importStar(require("path"));
-function isInterpretedLanguage(language) {
-    return (language === "javascript" || language === "python" || language === "ruby");
-}
-// Matches a string containing only characters that are legal to include in paths on windows.
-exports.legalWindowsPathCharactersRegex = /^[^<>:"|?]*$/;
-// Builds an environment variable suitable for LGTM_INDEX_INCLUDE or LGTM_INDEX_EXCLUDE
-function buildIncludeExcludeEnvVar(paths) {
-    // Ignore anything containing a *
-    paths = paths.filter((p) => p.indexOf("*") === -1);
-    // Some characters are illegal in path names in windows
-    if (process.platform === "win32") {
-        paths = paths.filter((p) => p.match(exports.legalWindowsPathCharactersRegex));
-    }
-    return paths.join("\n");
-}
-function printPathFiltersWarning(config, logger) {
-    // Index include/exclude/filters only work in javascript/python/ruby.
-    // If any other languages are detected/configured then show a warning.
-    if ((config.paths.length !== 0 || config.pathsIgnore.length !== 0) &&
-        !config.languages.every(isInterpretedLanguage)) {
-        logger.warning('The "paths"/"paths-ignore" fields of the config only have effect for JavaScript, Python, and Ruby');
-    }
-}
-exports.printPathFiltersWarning = printPathFiltersWarning;
-function includeAndExcludeAnalysisPaths(config) {
-    // The 'LGTM_INDEX_INCLUDE' and 'LGTM_INDEX_EXCLUDE' environment variables
-    // control which files/directories are traversed when scanning.
-    // This allows including files that otherwise would not be scanned, or
-    // excluding and not traversing entire file subtrees.
-    // It does not understand globs or double-globs because that would require it to
-    // traverse the entire file tree to determine which files are matched.
-    // Any paths containing "*" are not included in these.
-    if (config.paths.length !== 0) {
-        process.env["LGTM_INDEX_INCLUDE"] = buildIncludeExcludeEnvVar(config.paths);
-    }
-    // If the temporary or tools directory is in the working directory ignore that too.
-    const tempRelativeToWorking = path.relative(process.cwd(), config.tempDir);
-    let pathsIgnore = config.pathsIgnore;
-    if (!tempRelativeToWorking.startsWith("..") &&
-        !path.isAbsolute(tempRelativeToWorking)) {
-        pathsIgnore = pathsIgnore.concat(tempRelativeToWorking);
-    }
-    if (pathsIgnore.length !== 0) {
-        process.env["LGTM_INDEX_EXCLUDE"] = buildIncludeExcludeEnvVar(pathsIgnore);
-    }
-    // The 'LGTM_INDEX_FILTERS' environment variable controls which files are
-    // extracted or ignored. It does not control which directories are traversed.
-    // This does understand the glob and double-glob syntax.
-    const filters = [];
-    filters.push(...config.paths.map((p) => `include:${p}`));
-    filters.push(...config.pathsIgnore.map((p) => `exclude:${p}`));
-    if (filters.length !== 0) {
-        process.env["LGTM_INDEX_FILTERS"] = filters.join("\n");
-    }
-}
-exports.includeAndExcludeAnalysisPaths = includeAndExcludeAnalysisPaths;
-//# sourceMappingURL=analysis-paths.js.map
@@ -1 +0,0 @@
-{"version":3,"file":"analysis-paths.js","sourceRoot":"","sources":["../src/analysis-paths.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,2CAA6B;AAK7B,SAAS,qBAAqB,CAAC,QAAQ;IACrC,OAAO,CACL,QAAQ,KAAK,YAAY,IAAI,QAAQ,KAAK,QAAQ,IAAI,QAAQ,KAAK,MAAM,CAC1E,CAAC;AACJ,CAAC;AAED,6FAA6F;AAChF,QAAA,+BAA+B,GAAG,cAAc,CAAC;AAE9D,uFAAuF;AACvF,SAAS,yBAAyB,CAAC,KAAe;IAChD,iCAAiC;IACjC,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAEnD,uDAAuD;IACvD,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,EAAE,CAAC;QACjC,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,uCAA+B,CAAC,CAAC,CAAC;IACxE,CAAC;IAED,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED,SAAgB,uBAAuB,CACrC,MAA0B,EAC1B,MAAc;IAEd,qEAAqE;IACrE,sEAAsE;IACtE,IACE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,KAAK,CAAC,IAAI,MAAM,CAAC,WAAW,CAAC,MAAM,KAAK,CAAC,CAAC;QAC9D,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,CAAC,qBAAqB,CAAC,EAC9C,CAAC;QACD,MAAM,CAAC,OAAO,CACZ,mGAAmG,CACpG,CAAC;IACJ,CAAC;AACH,CAAC;AAdD,0DAcC;AAED,SAAgB,8BAA8B,CAAC,MAA0B;IACvE,0EAA0E;IAC1E,+DAA+D;IAC/D,sEAAsE;IACtE,qDAAqD;IACrD,gFAAgF;IAChF,sEAAsE;IACtE,sDAAsD;IACtD,IAAI,MAAM,CAAC,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QAC9B,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,GAAG,yBAAyB,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;IAC9E,CAAC;IACD,mFAAmF;IACnF,MAAM,qBAAqB,GAAG,IAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;IAC3E,IAAI,WAAW,GAAG,MAAM,CAAC,WAAW,CAAC;IACrC,IACE,CAAC,qBAAqB,CAAC,UAAU,CAAC,IAAI,CAAC;QACvC,CAAC,IAAI,CAAC,UAAU,CAAC,qBAAqB,CAAC,EACvC,CAAC;QACD,WAAW,GAAG,WAAW,CAAC,MAAM,CAAC,qBAAqB,CAAC,CAAC;IAC1D,CAAC;IACD,IAAI,WAAW,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QAC7B,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,GAAG,yBAAyB,CAAC,WAAW,CAAC,CAAC;IAC7E,CAAC;IAED,yEAAyE;IACzE,6EAA6E;IAC7E,wDAAwD;IACxD,MAAM,OAAO,GAAa,EAAE,CAAC;IAC7B,OAAO,CAAC,IAAI,CAAC,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC;IACzD,OAAO,CAAC,IAAI,CAAC,GAAG,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC;IAC/D,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACzB,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,GAAG,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACzD,CAAC;AACH,CAAC;AAjCD,wEAiCC"}
@@ -1,124 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const path = __importStar(require("path"));
-const ava_1 = __importDefault(require("ava"));
-const analysisPaths = __importStar(require("./analysis-paths"));
-const testing_utils_1 = require("./testing-utils");
-const util = __importStar(require("./util"));
-(0, testing_utils_1.setupTests)(ava_1.default);
-(0, ava_1.default)("emptyPaths", async (t) => {
-    return await util.withTmpDir(async (tmpDir) => {
-        const config = {
-            languages: [],
-            queries: {},
-            pathsIgnore: [],
-            paths: [],
-            originalUserInput: {},
-            tempDir: tmpDir,
-            codeQLCmd: "",
-            gitHubVersion: { type: util.GitHubVariant.DOTCOM },
-            dbLocation: path.resolve(tmpDir, "codeql_databases"),
-            packs: {},
-            debugMode: false,
-            debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
-            debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
-            augmentationProperties: {
-                injectedMlQueries: false,
-                packsInputCombines: false,
-                queriesInputCombines: false,
-            },
-            trapCaches: {},
-            trapCacheDownloadTime: 0,
-        };
-        analysisPaths.includeAndExcludeAnalysisPaths(config);
-        t.is(process.env["LGTM_INDEX_INCLUDE"], undefined);
-        t.is(process.env["LGTM_INDEX_EXCLUDE"], undefined);
-        t.is(process.env["LGTM_INDEX_FILTERS"], undefined);
-    });
-});
-(0, ava_1.default)("nonEmptyPaths", async (t) => {
-    return await util.withTmpDir(async (tmpDir) => {
-        const config = {
-            languages: [],
-            queries: {},
-            paths: ["path1", "path2", "**/path3"],
-            pathsIgnore: ["path4", "path5", "path6/**"],
-            originalUserInput: {},
-            tempDir: tmpDir,
-            codeQLCmd: "",
-            gitHubVersion: { type: util.GitHubVariant.DOTCOM },
-            dbLocation: path.resolve(tmpDir, "codeql_databases"),
-            packs: {},
-            debugMode: false,
-            debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
-            debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
-            augmentationProperties: {
-                injectedMlQueries: false,
-                packsInputCombines: false,
-                queriesInputCombines: false,
-            },
-            trapCaches: {},
-            trapCacheDownloadTime: 0,
-        };
-        analysisPaths.includeAndExcludeAnalysisPaths(config);
-        t.is(process.env["LGTM_INDEX_INCLUDE"], "path1\npath2");
-        t.is(process.env["LGTM_INDEX_EXCLUDE"], "path4\npath5");
-        t.is(process.env["LGTM_INDEX_FILTERS"], "include:path1\ninclude:path2\ninclude:**/path3\nexclude:path4\nexclude:path5\nexclude:path6/**");
-    });
-});
-(0, ava_1.default)("exclude temp dir", async (t) => {
-    const tempDir = path.join(process.cwd(), "codeql-runner-temp");
-    const config = {
-        languages: [],
-        queries: {},
-        pathsIgnore: [],
-        paths: [],
-        originalUserInput: {},
-        tempDir,
-        codeQLCmd: "",
-        gitHubVersion: { type: util.GitHubVariant.DOTCOM },
-        dbLocation: path.resolve(tempDir, "codeql_databases"),
-        packs: {},
-        debugMode: false,
-        debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
-        debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
-        augmentationProperties: {
-            injectedMlQueries: false,
-            packsInputCombines: false,
-            queriesInputCombines: false,
-        },
-        trapCaches: {},
-        trapCacheDownloadTime: 0,
-    };
-    analysisPaths.includeAndExcludeAnalysisPaths(config);
-    t.is(process.env["LGTM_INDEX_INCLUDE"], undefined);
-    t.is(process.env["LGTM_INDEX_EXCLUDE"], "codeql-runner-temp");
-    t.is(process.env["LGTM_INDEX_FILTERS"], undefined);
-});
-//# sourceMappingURL=analysis-paths.test.js.map
@@ -1 +0,0 @@
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@@ -26,22 +26,19 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
    return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.validateQueryFilters = exports.runCleanup = exports.runFinalize = exports.createQuerySuiteContents = exports.convertPackToQuerySuiteEntry = exports.runQueries = exports.dbIsFinalized = exports.createdDBForScannedLanguages = exports.CodeQLAnalysisError = void 0;
+exports.runCleanup = exports.runFinalize = exports.runQueries = exports.dbIsFinalized = exports.createdDBForScannedLanguages = exports.CodeQLAnalysisError = void 0;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const perf_hooks_1 = require("perf_hooks");
 const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
 const del_1 = __importDefault(require("del"));
 const yaml = __importStar(require("js-yaml"));
-const analysisPaths = __importStar(require("./analysis-paths"));
 const codeql_1 = require("./codeql");
-const configUtils = __importStar(require("./config-utils"));
 const feature_flags_1 = require("./feature-flags");
 const languages_1 = require("./languages");
 const tracer_config_1 = require("./tracer-config");
 const upload_lib_1 = require("./upload-lib");
 const util = __importStar(require("./util"));
-const util_1 = require("./util");
 class CodeQLAnalysisError extends Error {
    constructor(queriesStatusReport, message) {
        super(message);
@@ -56,7 +53,7 @@ async function setupPythonExtractor(logger, features, codeql) {
        // If CODEQL_PYTHON is not set, no dependencies were installed, so we don't need to do anything
        return;
    }
-    if (await features.getValue(feature_flags_1.Feature.DisablePythonDependencyInstallationEnabled, codeql)) {
+    if (await (0, feature_flags_1.isPythonDependencyInstallationDisabled)(codeql, features)) {
        logger.warning("We recommend that you remove the CODEQL_PYTHON environment variable from your workflow. This environment variable was originally used to specify a Python executable that included the dependencies of your Python code, however Python analysis no longer uses these dependencies." +
            "\nIf you used CODEQL_PYTHON to force the version of Python to analyze as, please use CODEQL_EXTRACTOR_PYTHON_ANALYSIS_VERSION instead, such as 'CODEQL_EXTRACTOR_PYTHON_ANALYSIS_VERSION=2.7' or 'CODEQL_EXTRACTOR_PYTHON_ANALYSIS_VERSION=3.11'.");
        return;
@@ -79,9 +76,6 @@ async function setupPythonExtractor(logger, features, codeql) {
    process.env["LGTM_PYTHON_SETUP_VERSION"] = output;
 }
 async function createdDBForScannedLanguages(codeql, config, logger, features) {
-    // Insert the LGTM_INDEX_X env vars at this point so they are set when
-    // we extract any scanned languages.
-    analysisPaths.includeAndExcludeAnalysisPaths(config);
    for (const language of config.languages) {
        if ((0, languages_1.isScannedLanguage)(language) &&
            !dbIsFinalized(config, language, logger)) {
@@ -134,88 +128,30 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
    const statusReport = {};
    const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
    const queryFlags = [memoryFlag, threadsFlag];
-    await (0, feature_flags_1.logCodeScanningConfigInCli)(codeql, features, logger);
    for (const language of config.languages) {
-        const queries = config.queries[language];
-        const queryFilters = validateQueryFilters(config.originalUserInput["query-filters"]);
-        const packsWithVersion = config.packs[language] || [];
        try {
            const sarifFile = path.join(sarifFolder, `${language}.sarif`);
-            let startTimeInterpretResults;
-            let endTimeInterpretResults;
-            if (await (0, feature_flags_1.useCodeScanningConfigInCli)(codeql, features)) {
-                // If we are using the code scanning config in the CLI,
-                // much of the work needed to generate the query suites
-                // is done in the CLI. We just need to make a single
-                // call to run all the queries for each language and
-                // another to interpret the results.
-                logger.startGroup(`Running queries for ${language}`);
-                const startTimeBuiltIn = new Date().getTime();
-                await runQueryGroup(language, "all", undefined, undefined, true);
-                // TODO should not be using `builtin` here. We should be using `all` instead.
-                // The status report does not support `all` yet.
-                statusReport[`analyze_builtin_queries_${language}_duration_ms`] =
-                    new Date().getTime() - startTimeBuiltIn;
-                logger.startGroup(`Interpreting results for ${language}`);
-                startTimeInterpretResults = new Date();
-                const analysisSummary = await runInterpretResults(language, undefined, sarifFile, config.debugMode);
-                endTimeInterpretResults = new Date();
-                statusReport[`interpret_results_${language}_duration_ms`] =
-                    endTimeInterpretResults.getTime() -
-                        startTimeInterpretResults.getTime();
-                logger.endGroup();
-                logger.info(analysisSummary);
-            }
-            else {
-                // config was generated by the action, so must be interpreted by the action.
-                const hasBuiltinQueries = queries?.builtin.length > 0;
-                const hasCustomQueries = queries?.custom.length > 0;
-                const hasPackWithCustomQueries = packsWithVersion.length > 0;
-                if (!hasBuiltinQueries &&
-                    !hasCustomQueries &&
-                    !hasPackWithCustomQueries) {
-                    throw new util_1.UserError(`Unable to analyze ${language} as no queries were selected for this language`);
-                }
-                const customQueryIndices = [];
-                for (let i = 0; i < queries.custom.length; ++i) {
-                    if (queries.custom[i].queries.length > 0) {
-                        customQueryIndices.push(i);
-                    }
-                }
-                logger.startGroup(`Running queries for ${language}`);
-                const querySuitePaths = [];
-                if (queries.builtin.length > 0) {
-                    const startTimeBuiltIn = new Date().getTime();
-                    querySuitePaths.push((await runQueryGroup(language, "builtin", createQuerySuiteContents(queries.builtin, queryFilters), undefined, customQueryIndices.length === 0 && packsWithVersion.length === 0)));
-                    statusReport[`analyze_builtin_queries_${language}_duration_ms`] =
-                        new Date().getTime() - startTimeBuiltIn;
-                }
-                const startTimeCustom = new Date().getTime();
-                let ranCustom = false;
-                for (const i of customQueryIndices) {
-                    querySuitePaths.push((await runQueryGroup(language, `custom-${i}`, createQuerySuiteContents(queries.custom[i].queries, queryFilters), queries.custom[i].searchPath, i === customQueryIndices[customQueryIndices.length - 1] &&
-                        packsWithVersion.length === 0)));
-                    ranCustom = true;
-                }
-                if (packsWithVersion.length > 0) {
-                    querySuitePaths.push(await runQueryPacks(language, "packs", packsWithVersion, queryFilters, true));
-                    ranCustom = true;
-                }
-                if (ranCustom) {
-                    statusReport[`analyze_custom_queries_${language}_duration_ms`] =
-                        new Date().getTime() - startTimeCustom;
-                }
-                logger.endGroup();
-                logger.startGroup(`Interpreting results for ${language}`);
-                startTimeInterpretResults = new Date();
-                const analysisSummary = await runInterpretResults(language, querySuitePaths, sarifFile, config.debugMode);
-                endTimeInterpretResults = new Date();
-                statusReport[`interpret_results_${language}_duration_ms`] =
-                    endTimeInterpretResults.getTime() -
-                        startTimeInterpretResults.getTime();
-                logger.endGroup();
-                logger.info(analysisSummary);
-            }
+            // The work needed to generate the query suites
+            // is done in the CLI. We just need to make a single
+            // call to run all the queries for each language and
+            // another to interpret the results.
+            logger.startGroup(`Running queries for ${language}`);
+            const startTimeRunQueries = new Date().getTime();
+            const databasePath = util.getCodeQLDatabasePath(config, language);
+            await codeql.databaseRunQueries(databasePath, queryFlags, features);
+            logger.debug(`Finished running queries for ${language}.`);
+            // TODO should not be using `builtin` here. We should be using `all` instead.
+            // The status report does not support `all` yet.
+            statusReport[`analyze_builtin_queries_${language}_duration_ms`] =
+                new Date().getTime() - startTimeRunQueries;
+            logger.startGroup(`Interpreting results for ${language}`);
+            const startTimeInterpretResults = new Date();
+            const analysisSummary = await runInterpretResults(language, undefined, sarifFile, config.debugMode);
+            const endTimeInterpretResults = new Date();
+            statusReport[`interpret_results_${language}_duration_ms`] =
+                endTimeInterpretResults.getTime() - startTimeInterpretResults.getTime();
+            logger.endGroup();
+            logger.info(analysisSummary);
            if (await features.getValue(feature_flags_1.Feature.QaTelemetryEnabled)) {
                const perQueryAlertCounts = getPerQueryAlertCounts(sarifFile, logger);
                const perQueryAlertCountEventReport = {
@@ -271,54 +207,8 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
        const databasePath = util.getCodeQLDatabasePath(config, language);
        return await codeql.databasePrintBaseline(databasePath);
    }
-    async function runQueryGroup(language, type, querySuiteContents, searchPath, optimizeForLastQueryRun) {
-        const databasePath = util.getCodeQLDatabasePath(config, language);
-        // Pass the queries to codeql using a file instead of using the command
-        // line to avoid command line length restrictions, particularly on windows.
-        const querySuitePath = querySuiteContents
-            ? `${databasePath}-queries-${type}.qls`
-            : undefined;
-        if (querySuiteContents && querySuitePath) {
-            fs.writeFileSync(querySuitePath, querySuiteContents);
-            logger.debug(`Query suite file for ${language}-${type}...\n${querySuiteContents}`);
-        }
-        await codeql.databaseRunQueries(databasePath, searchPath, querySuitePath, queryFlags, optimizeForLastQueryRun, features);
-        logger.debug(`BQRS results produced for ${language} (queries: ${type})"`);
-        return querySuitePath;
-    }
-    async function runQueryPacks(language, type, packs, queryFilters, optimizeForLastQueryRun) {
-        const databasePath = util.getCodeQLDatabasePath(config, language);
-        for (const pack of packs) {
-            logger.debug(`Running query pack for ${language}-${type}: ${pack}`);
-        }
-        // combine the list of packs into a query suite in order to run them all simultaneously.
-        const querySuite = packs.map(convertPackToQuerySuiteEntry).concat(queryFilters);
-        const querySuitePath = `${databasePath}-queries-${type}.qls`;
-        fs.writeFileSync(querySuitePath, yaml.dump(querySuite));
-        logger.debug(`BQRS results produced for ${language} (queries: ${type})"`);
-        await codeql.databaseRunQueries(databasePath, undefined, querySuitePath, queryFlags, optimizeForLastQueryRun, features);
-        return querySuitePath;
-    }
 }
 exports.runQueries = runQueries;
-function convertPackToQuerySuiteEntry(packStr) {
-    const pack = configUtils.parsePacksSpecification(packStr);
-    return {
-        qlpack: !pack.path ? pack.name : undefined,
-        from: pack.path ? pack.name : undefined,
-        version: pack.version,
-        query: pack.path?.endsWith(".ql") ? pack.path : undefined,
-        queries: !pack.path?.endsWith(".ql") && !pack.path?.endsWith(".qls")
-            ? pack.path
-            : undefined,
-        apply: pack.path?.endsWith(".qls") ? pack.path : undefined,
-    };
-}
-exports.convertPackToQuerySuiteEntry = convertPackToQuerySuiteEntry;
-function createQuerySuiteContents(queries, queryFilters) {
-    return yaml.dump(queries.map((q) => ({ query: q })).concat(queryFilters));
-}
-exports.createQuerySuiteContents = createQuerySuiteContents;
 async function runFinalize(outputDir, threadsFlag, memoryFlag, config, logger, features) {
    try {
        await (0, del_1.default)(outputDir, { force: true });
@@ -350,28 +240,4 @@ async function runCleanup(config, cleanupLevel, logger) {
    logger.endGroup();
 }
 exports.runCleanup = runCleanup;
-// exported for testing
-function validateQueryFilters(queryFilters) {
-    if (!queryFilters) {
-        return [];
-    }
-    if (!Array.isArray(queryFilters)) {
-        throw new util_1.UserError(`Query filters must be an array of "include" or "exclude" entries. Found ${typeof queryFilters}`);
-    }
-    const errors = [];
-    for (const qf of queryFilters) {
-        const keys = Object.keys(qf);
-        if (keys.length !== 1) {
-            errors.push(`Query filter must have exactly one key: ${JSON.stringify(qf)}`);
-        }
-        if (!["exclude", "include"].includes(keys[0])) {
-            errors.push(`Only "include" or "exclude" filters are allowed:\n${JSON.stringify(qf)}`);
-        }
-    }
-    if (errors.length) {
-        throw new util_1.UserError(`Invalid query filter.\n${errors.join("\n")}`);
-    }
-    return queryFilters;
-}
-exports.validateQueryFilters = validateQueryFilters;
 //# sourceMappingURL=analyze.js.map
@@ -1 +1 @@
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truncated
@@ -29,7 +29,6 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const ava_1 = __importDefault(require("ava"));
-const yaml = __importStar(require("js-yaml"));
 const sinon = __importStar(require("sinon"));
 const analyze_1 = require("./analyze");
 const codeql_1 = require("./codeql");
@@ -40,31 +39,23 @@ const testing_utils_1 = require("./testing-utils");
 const uploadLib = __importStar(require("./upload-lib"));
 const util = __importStar(require("./util"));
 (0, testing_utils_1.setupTests)(ava_1.default);
-/** Checks that the duration fields are populated for the correct language
- * and correct case of builtin or custom. Also checks the correct search
- * paths are set in the database analyze invocation.
+/**
+ * Checks the status report produced by the analyze Action.
 *
- * Mocks the QA telemetry feature flag and checks the appropriate status report
- * fields.
+ * - Checks that the duration fields are populated for the correct language.
+ * - Checks that the QA telemetry status report fields are populated when the QA feature flag is enabled.
 */
-(0, ava_1.default)("status report fields and search path setting", async (t) => {
-    let searchPathsUsed = [];
+(0, ava_1.default)("status report fields", async (t) => {
    return await util.withTmpDir(async (tmpDir) => {
        (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
        const memoryFlag = "";
        const addSnippetsFlag = "";
        const threadsFlag = "";
-        const packs = {
-            [languages_1.Language.cpp]: ["a/b@1.0.0"],
-            [languages_1.Language.java]: ["c/d@2.0.0"],
-        };
        sinon.stub(uploadLib, "validateSarifFileSchema");
        for (const language of Object.values(languages_1.Language)) {
            (0, codeql_1.setCodeQL)({
+                databaseRunQueries: async () => { },
                packDownload: async () => ({ packs: [] }),
-                databaseRunQueries: async (_db, searchPath) => {
-                    searchPathsUsed.push(searchPath);
-                },
                databaseInterpretResults: async (_db, _queriesRun, sarifFile) => {
                    fs.writeFileSync(sarifFile, JSON.stringify({
                        runs: [
@@ -104,12 +95,8 @@ const util = __importStar(require("./util"));
                },
                databasePrintBaseline: async () => "",
            });
-            searchPathsUsed = [];
            const config = {
                languages: [language],
-                queries: {},
-                pathsIgnore: [],
-                paths: [],
                originalUserInput: {},
                tempDir: tmpDir,
                codeQLCmd: "",
@@ -117,7 +104,6 @@ const util = __importStar(require("./util"));
                    type: util.GitHubVariant.DOTCOM,
                },
                dbLocation: path.resolve(tmpDir, "codeql_databases"),
-                packs,
                debugMode: false,
                debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
                debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
@@ -131,342 +117,18 @@ const util = __importStar(require("./util"));
            fs.mkdirSync(util.getCodeQLDatabasePath(config, language), {
                recursive: true,
            });
-            config.queries[language] = {
-                builtin: ["foo.ql"],
-                custom: [],
-            };
-            const builtinStatusReport = await (0, analyze_1.runQueries)(tmpDir, memoryFlag, addSnippetsFlag, threadsFlag, undefined, config, (0, logging_1.getRunnerLogger)(true), (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.QaTelemetryEnabled]));
-            const hasPacks = language in packs;
-            const statusReportKeys = Object.keys(builtinStatusReport).sort();
-            if (hasPacks) {
-                t.deepEqual(statusReportKeys.length, 4, statusReportKeys.toString());
-                t.deepEqual(statusReportKeys[0], `analyze_builtin_queries_${language}_duration_ms`);
-                t.deepEqual(statusReportKeys[1], `analyze_custom_queries_${language}_duration_ms`);
-                t.deepEqual(statusReportKeys[2], "event_reports");
-                t.deepEqual(statusReportKeys[3], `interpret_results_${language}_duration_ms`);
-            }
-            else {
-                t.deepEqual(statusReportKeys[0], `analyze_builtin_queries_${language}_duration_ms`);
-                t.deepEqual(statusReportKeys[1], "event_reports");
-                t.deepEqual(statusReportKeys[2], `interpret_results_${language}_duration_ms`);
-            }
-            if (builtinStatusReport.event_reports) {
-                for (const eventReport of builtinStatusReport.event_reports) {
-                    t.deepEqual(eventReport.event, "codeql database interpret-results");
-                    t.true("properties" in eventReport);
-                    t.true("alertCounts" in eventReport.properties);
-                }
-            }
-            config.queries[language] = {
-                builtin: [],
-                custom: [
-                    {
-                        queries: ["foo.ql"],
-                        searchPath: "/1",
-                    },
-                    {
-                        queries: ["bar.ql"],
-                        searchPath: "/2",
-                    },
-                ],
-            };
-            const customStatusReport = await (0, analyze_1.runQueries)(tmpDir, memoryFlag, addSnippetsFlag, threadsFlag, undefined, config, (0, logging_1.getRunnerLogger)(true), (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.QaTelemetryEnabled]));
-            t.deepEqual(Object.keys(customStatusReport).length, 3);
-            t.true(`analyze_custom_queries_${language}_duration_ms` in customStatusReport);
-            const expectedSearchPathsUsed = hasPacks
-                ? [undefined, undefined, "/1", "/2", undefined]
-                : [undefined, "/1", "/2"];
-            t.deepEqual(searchPathsUsed, expectedSearchPathsUsed);
-            t.true(`interpret_results_${language}_duration_ms` in customStatusReport);
-            t.true("event_reports" in customStatusReport);
-            if (customStatusReport.event_reports) {
-                for (const eventReport of customStatusReport.event_reports) {
-                    t.deepEqual(eventReport.event, "codeql database interpret-results");
-                    t.true("properties" in eventReport);
-                    t.true("alertCounts" in eventReport.properties);
-                }
+            const statusReport = await (0, analyze_1.runQueries)(tmpDir, memoryFlag, addSnippetsFlag, threadsFlag, undefined, config, (0, logging_1.getRunnerLogger)(true), (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.QaTelemetryEnabled]));
+            t.deepEqual(Object.keys(statusReport).sort(), [
+                `analyze_builtin_queries_${language}_duration_ms`,
+                "event_reports",
+                `interpret_results_${language}_duration_ms`,
+            ]);
+            for (const eventReport of statusReport.event_reports) {
+                t.deepEqual(eventReport.event, "codeql database interpret-results");
+                t.true("properties" in eventReport);
+                t.true("alertCounts" in eventReport.properties);
            }
        }
-        verifyQuerySuites(tmpDir);
    });
-    function verifyQuerySuites(tmpDir) {
-        const qlsContent = [
-            {
-                query: "foo.ql",
-            },
-        ];
-        const qlsContent2 = [
-            {
-                query: "bar.ql",
-            },
-        ];
-        for (const lang of Object.values(languages_1.Language)) {
-            t.deepEqual(readContents(`${lang}-queries-builtin.qls`), qlsContent);
-            t.deepEqual(readContents(`${lang}-queries-custom-0.qls`), qlsContent);
-            t.deepEqual(readContents(`${lang}-queries-custom-1.qls`), qlsContent2);
-        }
-        function readContents(name) {
-            const x = fs.readFileSync(path.join(tmpDir, "codeql_databases", name), "utf8");
-            console.log(x);
-            return yaml.load(fs.readFileSync(path.join(tmpDir, "codeql_databases", name), "utf8"));
-        }
-    }
-});
-function mockCodeQL() {
-    return {
-        getVersion: async () => (0, testing_utils_1.makeVersionInfo)("1.0.0"),
-        databaseRunQueries: sinon.spy(),
-        databaseInterpretResults: async () => "",
-        databasePrintBaseline: async () => "",
-    };
-}
-function createBaseConfig(tmpDir) {
-    return {
-        languages: [],
-        queries: {},
-        pathsIgnore: [],
-        paths: [],
-        originalUserInput: {},
-        tempDir: "tempDir",
-        codeQLCmd: "",
-        gitHubVersion: {
-            type: util.GitHubVariant.DOTCOM,
-        },
-        dbLocation: path.resolve(tmpDir, "codeql_databases"),
-        packs: {},
-        debugMode: false,
-        debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
-        debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
-        augmentationProperties: {
-            packsInputCombines: false,
-            queriesInputCombines: false,
-        },
-        trapCaches: {},
-        trapCacheDownloadTime: 0,
-    };
-}
-function createQueryConfig(builtin, custom) {
-    return {
-        builtin,
-        custom: custom.map((c) => ({ searchPath: "/search", queries: [c] })),
-    };
-}
-async function runQueriesWithConfig(config, features) {
-    for (const language of config.languages) {
-        fs.mkdirSync(util.getCodeQLDatabasePath(config, language), {
-            recursive: true,
-        });
-    }
-    return (0, analyze_1.runQueries)("sarif-folder", "--memFlag", "--addSnippetsFlag", "--threadsFlag", undefined, config, (0, logging_1.getRunnerLogger)(true), (0, testing_utils_1.createFeatures)(features));
-}
-function getDatabaseRunQueriesCalls(mock) {
-    return mock.databaseRunQueries.getCalls();
-}
-(0, ava_1.default)("optimizeForLastQueryRun for one language", async (t) => {
-    return await util.withTmpDir(async (tmpDir) => {
-        const codeql = mockCodeQL();
-        (0, codeql_1.setCodeQL)(codeql);
-        const config = createBaseConfig(tmpDir);
-        config.languages = [languages_1.Language.cpp];
-        config.queries.cpp = createQueryConfig(["foo.ql"], []);
-        await runQueriesWithConfig(config, []);
-        t.deepEqual(getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]), [true]);
-    });
-});
-(0, ava_1.default)("optimizeForLastQueryRun for two languages", async (t) => {
-    return await util.withTmpDir(async (tmpDir) => {
-        const codeql = mockCodeQL();
-        (0, codeql_1.setCodeQL)(codeql);
-        const config = createBaseConfig(tmpDir);
-        config.languages = [languages_1.Language.cpp, languages_1.Language.java];
-        config.queries.cpp = createQueryConfig(["foo.ql"], []);
-        config.queries.java = createQueryConfig(["bar.ql"], []);
-        await runQueriesWithConfig(config, []);
-        t.deepEqual(getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]), [true, true]);
-    });
-});
-(0, ava_1.default)("optimizeForLastQueryRun for two languages, with custom queries", async (t) => {
-    return await util.withTmpDir(async (tmpDir) => {
-        const codeql = mockCodeQL();
-        (0, codeql_1.setCodeQL)(codeql);
-        const config = createBaseConfig(tmpDir);
-        config.languages = [languages_1.Language.cpp, languages_1.Language.java];
-        config.queries.cpp = createQueryConfig(["foo.ql"], ["c1.ql", "c2.ql"]);
-        config.queries.java = createQueryConfig(["bar.ql"], ["c3.ql"]);
-        await runQueriesWithConfig(config, []);
-        t.deepEqual(getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]), [false, false, true, false, true]);
-    });
-});
-(0, ava_1.default)("optimizeForLastQueryRun for two languages, with custom queries and packs", async (t) => {
-    return await util.withTmpDir(async (tmpDir) => {
-        const codeql = mockCodeQL();
-        (0, codeql_1.setCodeQL)(codeql);
-        const config = createBaseConfig(tmpDir);
-        config.languages = [languages_1.Language.cpp, languages_1.Language.java];
-        config.queries.cpp = createQueryConfig(["foo.ql"], ["c1.ql", "c2.ql"]);
-        config.queries.java = createQueryConfig(["bar.ql"], ["c3.ql"]);
-        config.packs.cpp = ["a/cpp-pack1@0.1.0"];
-        config.packs.java = ["b/java-pack1@0.2.0", "b/java-pack2@0.3.3"];
-        await runQueriesWithConfig(config, []);
-        t.deepEqual(getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]), [false, false, false, true, false, false, true]);
-    });
-});
-(0, ava_1.default)("optimizeForLastQueryRun for one language, CliConfigFileEnabled", async (t) => {
-    return await util.withTmpDir(async (tmpDir) => {
-        const codeql = mockCodeQL();
-        (0, codeql_1.setCodeQL)(codeql);
-        const config = createBaseConfig(tmpDir);
-        config.languages = [languages_1.Language.cpp];
-        await runQueriesWithConfig(config, [feature_flags_1.Feature.CliConfigFileEnabled]);
-        t.deepEqual(getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]), [true]);
-    });
-});
-(0, ava_1.default)("optimizeForLastQueryRun for two languages, CliConfigFileEnabled", async (t) => {
-    return await util.withTmpDir(async (tmpDir) => {
-        const codeql = mockCodeQL();
-        (0, codeql_1.setCodeQL)(codeql);
-        const config = createBaseConfig(tmpDir);
-        config.languages = [languages_1.Language.cpp, languages_1.Language.java];
-        await runQueriesWithConfig(config, [feature_flags_1.Feature.CliConfigFileEnabled]);
-        t.deepEqual(getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]), [true, true]);
-    });
-});
-(0, ava_1.default)("validateQueryFilters", (t) => {
-    t.notThrows(() => (0, analyze_1.validateQueryFilters)([]));
-    t.notThrows(() => (0, analyze_1.validateQueryFilters)(undefined));
-    t.notThrows(() => {
-        return (0, analyze_1.validateQueryFilters)([
-            {
-                exclude: {
-                    "problem.severity": "recommendation",
-                },
-            },
-            {
-                exclude: {
-                    "tags contain": ["foo", "bar"],
-                },
-            },
-            {
-                include: {
-                    "problem.severity": "something-to-think-about",
-                },
-            },
-            {
-                include: {
-                    "tags contain": ["baz", "bop"],
-                },
-            },
-        ]);
-    });
-    t.throws(() => {
-        return (0, analyze_1.validateQueryFilters)([
-            {
-                exclude: {
-                    "tags contain": ["foo", "bar"],
-                },
-                include: {
-                    "tags contain": ["baz", "bop"],
-                },
-            },
-        ]);
-    }, { message: /Query filter must have exactly one key/ });
-    t.throws(() => {
-        return (0, analyze_1.validateQueryFilters)([{ xxx: "foo" }]);
-    }, { message: /Only "include" or "exclude" filters are allowed/ });
-    t.throws(() => {
-        // eslint-disable-next-line @typescript-eslint/no-unsafe-argument
-        return (0, analyze_1.validateQueryFilters)({ exclude: "foo" });
-    }, {
-        message: /Query filters must be an array of "include" or "exclude" entries/,
-    });
-});
-const convertPackToQuerySuiteEntryMacro = ava_1.default.macro({
-    exec: (t, packSpec, suiteEntry) => t.deepEqual((0, analyze_1.convertPackToQuerySuiteEntry)(packSpec), suiteEntry),
-    title: (_providedTitle, packSpec) => `Query Suite Entry: ${packSpec}`,
-});
-(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b", {
-    qlpack: "a/b",
-    from: undefined,
-    version: undefined,
-    query: undefined,
-    queries: undefined,
-    apply: undefined,
-});
-(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b@~1.2.3", {
-    qlpack: "a/b",
-    from: undefined,
-    version: "~1.2.3",
-    query: undefined,
-    queries: undefined,
-    apply: undefined,
-});
-(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b:my/path", {
-    qlpack: undefined,
-    from: "a/b",
-    version: undefined,
-    query: undefined,
-    queries: "my/path",
-    apply: undefined,
-});
-(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b@~1.2.3:my/path", {
-    qlpack: undefined,
-    from: "a/b",
-    version: "~1.2.3",
-    query: undefined,
-    queries: "my/path",
-    apply: undefined,
-});
-(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b:my/path/query.ql", {
-    qlpack: undefined,
-    from: "a/b",
-    version: undefined,
-    query: "my/path/query.ql",
-    queries: undefined,
-    apply: undefined,
-});
-(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b@~1.2.3:my/path/query.ql", {
-    qlpack: undefined,
-    from: "a/b",
-    version: "~1.2.3",
-    query: "my/path/query.ql",
-    queries: undefined,
-    apply: undefined,
-});
-(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b:my/path/suite.qls", {
-    qlpack: undefined,
-    from: "a/b",
-    version: undefined,
-    query: undefined,
-    queries: undefined,
-    apply: "my/path/suite.qls",
-});
-(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b@~1.2.3:my/path/suite.qls", {
-    qlpack: undefined,
-    from: "a/b",
-    version: "~1.2.3",
-    query: undefined,
-    queries: undefined,
-    apply: "my/path/suite.qls",
-});
-(0, ava_1.default)("convertPackToQuerySuiteEntry Failure", (t) => {
-    t.throws(() => (0, analyze_1.convertPackToQuerySuiteEntry)("this-is-not-a-pack"));
-});
-(0, ava_1.default)("createQuerySuiteContents", (t) => {
-    const yamlResult = (0, analyze_1.createQuerySuiteContents)(["query1.ql", "query2.ql"], [
-        {
-            exclude: { "problem.severity": "recommendation" },
-        },
-        {
-            include: { "problem.severity": "recommendation" },
-        },
-    ]);
-    const expected = `- query: query1.ql
- query: query2.ql
- exclude:
-    problem.severity: recommendation
- include:
-    problem.severity: recommendation
-`;
-    t.deepEqual(yamlResult, expected);
 });
 //# sourceMappingURL=analyze.test.js.map
@@ -1 +1 @@
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@@ -1 +1 @@
-{ "maximumVersion": "3.12", "minimumVersion": "3.7" }
+{ "maximumVersion": "3.12", "minimumVersion": "3.8" }
@@ -51,11 +51,11 @@ async function determineAutobuildLanguages(config, logger) {
     * For example, consider a user with the following workflow file:
     *
     * ```yml
-     * - uses: github/codeql-action/init@v2
+     * - uses: github/codeql-action/init@v3
     *   with:
     *     languages: go, java
-     * - uses: github/codeql-action/autobuild@v2
-     * - uses: github/codeql-action/analyze@v2
+     * - uses: github/codeql-action/autobuild@v3
+     * - uses: github/codeql-action/analyze@v3
     * ```
     *
     * - With Go extraction disabled, we will run the Java autobuilder in the
@@ -23,7 +23,7 @@ var __importStar = (this && this.__importStar) || function (mod) {
    return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getGeneratedCodeScanningConfigPath = exports.getTrapCachingExtractorConfigArgsForLang = exports.getTrapCachingExtractorConfigArgs = exports.getExtraOptions = exports.getCodeQLForCmd = exports.getCodeQLForTesting = exports.getCachedCodeQL = exports.setCodeQL = exports.getCodeQL = exports.setupCodeQL = exports.CODEQL_VERSION_SUBLANGUAGE_FILE_COVERAGE = exports.CODEQL_VERSION_ANALYSIS_SUMMARY_V2 = exports.CODEQL_VERSION_LANGUAGE_ALIASING = exports.CODEQL_VERSION_LANGUAGE_BASELINE_CONFIG = exports.CODEQL_VERSION_RESOLVE_ENVIRONMENT = exports.CODEQL_VERSION_DIAGNOSTICS_EXPORT_FIXED = exports.CODEQL_VERSION_BETTER_NO_CODE_ERROR_MESSAGE = exports.CODEQL_VERSION_INIT_WITH_QLCONFIG = exports.CODEQL_VERSION_EXPORT_CODE_SCANNING_CONFIG = exports.CODEQL_VERSION_SECURITY_EXPERIMENTAL_SUITE = exports.CODEQL_VERSION_EXPORT_FAILED_SARIF = exports.CommandInvocationError = void 0;
+exports.getGeneratedCodeScanningConfigPath = exports.getTrapCachingExtractorConfigArgsForLang = exports.getTrapCachingExtractorConfigArgs = exports.getExtraOptions = exports.getCodeQLForCmd = exports.getCodeQLForTesting = exports.getCachedCodeQL = exports.setCodeQL = exports.getCodeQL = exports.setupCodeQL = exports.CODEQL_VERSION_SUBLANGUAGE_FILE_COVERAGE = exports.CODEQL_VERSION_ANALYSIS_SUMMARY_V2 = exports.CODEQL_VERSION_LANGUAGE_ALIASING = exports.CODEQL_VERSION_LANGUAGE_BASELINE_CONFIG = exports.CODEQL_VERSION_RESOLVE_ENVIRONMENT = exports.CODEQL_VERSION_DIAGNOSTICS_EXPORT_FIXED = exports.CODEQL_VERSION_BETTER_NO_CODE_ERROR_MESSAGE = exports.CODEQL_VERSION_INIT_WITH_QLCONFIG = exports.CODEQL_VERSION_EXPORT_CODE_SCANNING_CONFIG = exports.CODEQL_VERSION_SECURITY_EXPERIMENTAL_SUITE = exports.CommandInvocationError = void 0;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const core = __importStar(require("@actions/core"));
@@ -73,7 +73,7 @@ let cachedCodeQL = undefined;
 * The version flags below can be used to conditionally enable certain features
 * on versions newer than this.
 */
-const CODEQL_MINIMUM_VERSION = "2.10.5";
+const CODEQL_MINIMUM_VERSION = "2.11.6";
 /**
 * This version will shortly become the oldest version of CodeQL that the Action will run with.
 */
@@ -92,13 +92,7 @@ const GHES_MOST_RECENT_DEPRECATION_DATE = "2023-11-08";
 * flag is older than the oldest supported version above, it may be removed.
 */
 /**
- * Versions 2.11.3+ of the CodeQL CLI support exporting a failed SARIF file via
- * `codeql database export-diagnostics` or `codeql diagnostics export`.
- */
-exports.CODEQL_VERSION_EXPORT_FAILED_SARIF = "2.11.3";
-const CODEQL_VERSION_FILE_BASELINE_INFORMATION = "2.11.3";
-/**
- * Versions 2.11.1+ of the CodeQL Bundle include a `security-experimental` built-in query suite for
+ * Versions 2.12.1+ of the CodeQL Bundle include a `security-experimental` built-in query suite for
 * each language.
 */
 exports.CODEQL_VERSION_SECURITY_EXPERIMENTAL_SUITE = "2.12.1";
@@ -285,23 +279,18 @@ async function getCodeQLForCmd(cmd, checkVersion) {
        async printVersion() {
            await runTool(cmd, ["version", "--format=json"]);
        },
-        async databaseInitCluster(config, sourceRoot, processName, features, qlconfigFile, logger) {
+        async databaseInitCluster(config, sourceRoot, processName, qlconfigFile, logger) {
            const extraArgs = config.languages.map((language) => `--language=${language}`);
            if (config.languages.filter((l) => (0, languages_1.isTracedLanguage)(l)).length > 0) {
                extraArgs.push("--begin-tracing");
                extraArgs.push(...(await getTrapCachingExtractorConfigArgs(config)));
                extraArgs.push(`--trace-process-name=${processName}`);
            }
-            // A code scanning config file is only generated if the CliConfigFileEnabled feature flag is enabled.
-            const codeScanningConfigFile = await generateCodeScanningConfig(codeql, config, features, logger);
-            // Only pass external repository token if a config file is going to be parsed by the CLI.
-            let externalRepositoryToken;
-            if (codeScanningConfigFile) {
-                externalRepositoryToken = (0, actions_util_1.getOptionalInput)("external-repository-token");
-                extraArgs.push(`--codescanning-config=${codeScanningConfigFile}`);
-                if (externalRepositoryToken) {
-                    extraArgs.push("--external-repository-token-stdin");
-                }
+            const codeScanningConfigFile = await generateCodeScanningConfig(config, logger);
+            const externalRepositoryToken = (0, actions_util_1.getOptionalInput)("external-repository-token");
+            extraArgs.push(`--codescanning-config=${codeScanningConfigFile}`);
+            if (externalRepositoryToken) {
+                extraArgs.push("--external-repository-token-stdin");
            }
            if (qlconfigFile !== undefined &&
                (await util.codeQlVersionAbove(this, exports.CODEQL_VERSION_INIT_WITH_QLCONFIG))) {
@@ -458,7 +447,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                throw new Error(`Unexpected output from codeql resolve build-environment: ${e} in\n${output}`);
            }
        },
-        async databaseRunQueries(databasePath, extraSearchPath, querySuitePath, flags, optimizeForLastQueryRun, features) {
+        async databaseRunQueries(databasePath, flags, features) {
            const codeqlArgs = [
                "database",
                "run-queries",
@@ -468,16 +457,9 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                "-v",
                ...getExtraOptionsFromEnv(["database", "run-queries"]),
            ];
-            if (optimizeForLastQueryRun &&
-                (await util.supportExpectDiscardedCache(this))) {
+            if (await util.supportExpectDiscardedCache(this)) {
                codeqlArgs.push("--expect-discarded-cache");
            }
-            if (extraSearchPath !== undefined) {
-                codeqlArgs.push("--additional-packs", extraSearchPath);
-            }
-            if (querySuitePath) {
-                codeqlArgs.push(querySuitePath);
-            }
            if (await features.getValue(feature_flags_1.Feature.EvaluatorFineGrainedParallelismEnabled, this)) {
                codeqlArgs.push("--intra-layer-parallelism");
            }
@@ -503,6 +485,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                addSnippetsFlag,
                "--print-diagnostics-summary",
                "--print-metrics-summary",
+                "--sarif-add-baseline-file-info",
                "--sarif-add-query-help",
                "--sarif-group-rules-by-pack",
                ...(await getCodeScanningConfigExportArguments(config, this)),
@@ -511,9 +494,6 @@ async function getCodeQLForCmd(cmd, checkVersion) {
            if (automationDetailsId !== undefined) {
                codeqlArgs.push("--sarif-category", automationDetailsId);
            }
-            if (await util.codeQlVersionAbove(this, CODEQL_VERSION_FILE_BASELINE_INFORMATION)) {
-                codeqlArgs.push("--sarif-add-baseline-file-info");
-            }
            if (await isSublanguageFileCoverageEnabled(config, this)) {
                codeqlArgs.push("--sublanguage-file-coverage");
            }
@@ -870,17 +850,13 @@ function ensureEndsInPeriod(text) {
    return text[text.length - 1] === "." ? text : `${text}.`;
 }
 /**
- * If appropriate, generates a code scanning configuration that is to be used for a scan.
- * If the configuration is not to be generated, returns undefined.
+ * Generates a code scanning configuration that is to be used for a scan.
 *
 * @param codeql The CodeQL object to use.
 * @param config The configuration to use.
 * @returns the path to the generated user configuration file.
 */
-async function generateCodeScanningConfig(codeql, config, features, logger) {
-    if (!(await (0, feature_flags_1.useCodeScanningConfigInCli)(codeql, features))) {
-        return;
-    }
+async function generateCodeScanningConfig(config, logger) {
    const codeScanningConfigFile = getGeneratedCodeScanningConfigPath(config);
    // make a copy so we can modify it
    const augmentedConfig = cloneObject(config.originalUserInput);
@@ -1 +1 @@
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@@ -40,7 +40,6 @@ const sinon = __importStar(require("sinon"));
 const actionsUtil = __importStar(require("./actions-util"));
 const codeql = __importStar(require("./codeql"));
 const defaults = __importStar(require("./defaults.json"));
-const feature_flags_1 = require("./feature-flags");
 const languages_1 = require("./languages");
 const logging_1 = require("./logging");
 const setup_codeql_1 = require("./setup-codeql");
@@ -58,9 +57,6 @@ ava_1.default.beforeEach(() => {
    (0, util_1.initializeEnvironment)("1.2.3");
    stubConfig = {
        languages: [languages_1.Language.cpp],
-        queries: {},
-        pathsIgnore: [],
-        paths: [],
        originalUserInput: {},
        tempDir: "",
        codeQLCmd: "",
@@ -68,7 +64,6 @@ ava_1.default.beforeEach(() => {
            type: util.GitHubVariant.DOTCOM,
        },
        dbLocation: "",
-        packs: {},
        debugMode: false,
        debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
        debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
@@ -373,45 +368,20 @@ for (const isBundleVersionInUrl of [true, false]) {
    t.throws(() => codeql.getExtraOptions({ foo: 87 }, ["foo"], []));
    t.throws(() => codeql.getExtraOptions({ "*": [42], foo: { "*": 87, bar: [99] } }, ["foo", "bar"], []));
 });
-(0, ava_1.default)("databaseInitCluster() without injected codescanning config", async (t) => {
-    await util.withTmpDir(async (tempDir) => {
-        const runnerConstructorStub = stubToolRunnerConstructor();
-        const codeqlObject = await codeql.getCodeQLForTesting();
-        sinon.stub(codeqlObject, "getVersion").resolves((0, testing_utils_1.makeVersionInfo)("2.10.5"));
-        // safeWhich throws because of the test CodeQL object.
-        sinon.stub(safeWhich, "safeWhich").resolves("");
-        const thisStubConfig = {
-            ...stubConfig,
-            tempDir,
-            augmentationProperties: {
-                queriesInputCombines: false,
-                packsInputCombines: false,
-            },
-        };
-        await codeqlObject.databaseInitCluster(thisStubConfig, "", undefined, (0, testing_utils_1.createFeatures)([]), "/path/to/qlconfig.yml", (0, logging_1.getRunnerLogger)(true));
-        const args = runnerConstructorStub.firstCall.args[1];
-        // should NOT have used an config file
-        const configArg = args.find((arg) => arg.startsWith("--codescanning-config="));
-        t.falsy(configArg, "Should NOT have injected a codescanning config");
-    });
-});
 // Test macro for ensuring different variants of injected augmented configurations
 const injectedConfigMacro = ava_1.default.macro({
    exec: async (t, augmentationProperties, configOverride, expectedConfig) => {
        await util.withTmpDir(async (tempDir) => {
            const runnerConstructorStub = stubToolRunnerConstructor();
            const codeqlObject = await codeql.getCodeQLForTesting();
-            sinon
-                .stub(codeqlObject, "getVersion")
-                .resolves((0, testing_utils_1.makeVersionInfo)(feature_flags_1.featureConfig[feature_flags_1.Feature.CliConfigFileEnabled].minimumVersion ||
-                "1.0.0"));
+            sinon.stub(codeqlObject, "getVersion").resolves((0, testing_utils_1.makeVersionInfo)("1.0.0"));
            const thisStubConfig = {
                ...stubConfig,
                ...configOverride,
                tempDir,
                augmentationProperties,
            };
-            await codeqlObject.databaseInitCluster(thisStubConfig, "", undefined, (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.CliConfigFileEnabled]), undefined, (0, logging_1.getRunnerLogger)(true));
+            await codeqlObject.databaseInitCluster(thisStubConfig, "", undefined, undefined, (0, logging_1.getRunnerLogger)(true));
            const args = runnerConstructorStub.firstCall.args[1];
            // should have used an config file
            const configArg = args.find((arg) => arg.startsWith("--codescanning-config="));
@@ -542,30 +512,14 @@ const injectedConfigMacro = ava_1.default.macro({
        queries: [],
    },
 }, {});
-(0, ava_1.default)("does not pass a code scanning config or qlconfig file to the CLI when CLI config passing is disabled", async (t) => {
-    await util.withTmpDir(async (tempDir) => {
-        const runnerConstructorStub = stubToolRunnerConstructor();
-        const codeqlObject = await codeql.getCodeQLForTesting();
-        // stubbed version doesn't matter. It just needs to be valid semver.
-        sinon.stub(codeqlObject, "getVersion").resolves((0, testing_utils_1.makeVersionInfo)("0.0.0"));
-        await codeqlObject.databaseInitCluster({ ...stubConfig, tempDir }, "", undefined, (0, testing_utils_1.createFeatures)([]), "/path/to/qlconfig.yml", (0, logging_1.getRunnerLogger)(true));
-        const args = runnerConstructorStub.firstCall.args[1];
-        // should not have used a config file
-        const hasConfigArg = args.some((arg) => arg.startsWith("--codescanning-config="));
-        t.false(hasConfigArg, "Should NOT have injected a codescanning config");
-        // should not have passed a qlconfig file
-        const hasQlconfigArg = args.some((arg) => arg.startsWith("--qlconfig-file="));
-        t.false(hasQlconfigArg, "Should NOT have passed a qlconfig file");
-    });
-});
-(0, ava_1.default)("passes a code scanning config AND qlconfig to the CLI when CLI config passing is enabled", async (t) => {
+(0, ava_1.default)("passes a code scanning config AND qlconfig to the CLI", async (t) => {
    await util.withTmpDir(async (tempDir) => {
        const runnerConstructorStub = stubToolRunnerConstructor();
        const codeqlObject = await codeql.getCodeQLForTesting();
        sinon
            .stub(codeqlObject, "getVersion")
            .resolves((0, testing_utils_1.makeVersionInfo)(codeql.CODEQL_VERSION_INIT_WITH_QLCONFIG));
-        await codeqlObject.databaseInitCluster({ ...stubConfig, tempDir }, "", undefined, (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.CliConfigFileEnabled]), "/path/to/qlconfig.yml", (0, logging_1.getRunnerLogger)(true));
+        await codeqlObject.databaseInitCluster({ ...stubConfig, tempDir }, "", undefined, "/path/to/qlconfig.yml", (0, logging_1.getRunnerLogger)(true));
        const args = runnerConstructorStub.firstCall.args[1];
        // should have used a config file
        const hasCodeScanningConfigArg = args.some((arg) => arg.startsWith("--codescanning-config="));
@@ -575,12 +529,12 @@ const injectedConfigMacro = ava_1.default.macro({
        t.truthy(hasQlconfigArg, "Should have injected a codescanning config");
    });
 });
-(0, ava_1.default)("passes a code scanning config BUT NOT a qlconfig to the CLI when CLI config passing is enabled", async (t) => {
+(0, ava_1.default)("passes a code scanning config BUT NOT a qlconfig to the CLI for CodeQL v2.12.2", async (t) => {
    await util.withTmpDir(async (tempDir) => {
        const runnerConstructorStub = stubToolRunnerConstructor();
        const codeqlObject = await codeql.getCodeQLForTesting();
        sinon.stub(codeqlObject, "getVersion").resolves((0, testing_utils_1.makeVersionInfo)("2.12.2"));
-        await codeqlObject.databaseInitCluster({ ...stubConfig, tempDir }, "", undefined, (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.CliConfigFileEnabled]), "/path/to/qlconfig.yml", (0, logging_1.getRunnerLogger)(true));
+        await codeqlObject.databaseInitCluster({ ...stubConfig, tempDir }, "", undefined, "/path/to/qlconfig.yml", (0, logging_1.getRunnerLogger)(true));
        const args = runnerConstructorStub.firstCall.args[1];
        // should have used a config file
        const hasCodeScanningConfigArg = args.some((arg) => arg.startsWith("--codescanning-config="));
@@ -597,31 +551,13 @@ const injectedConfigMacro = ava_1.default.macro({
        sinon
            .stub(codeqlObject, "getVersion")
            .resolves((0, testing_utils_1.makeVersionInfo)(codeql.CODEQL_VERSION_INIT_WITH_QLCONFIG));
-        await codeqlObject.databaseInitCluster({ ...stubConfig, tempDir }, "", undefined, (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.CliConfigFileEnabled]), undefined, // undefined qlconfigFile
+        await codeqlObject.databaseInitCluster({ ...stubConfig, tempDir }, "", undefined, undefined, // undefined qlconfigFile
        (0, logging_1.getRunnerLogger)(true));
        const args = runnerConstructorStub.firstCall.args[1];
        const hasQlconfigArg = args.some((arg) => arg.startsWith("--qlconfig-file="));
        t.false(hasQlconfigArg, "should NOT have injected a qlconfig");
    });
 });
-(0, ava_1.default)("databaseInterpretResults() sets --sarif-add-baseline-file-info for 2.11.3", async (t) => {
-    const runnerConstructorStub = stubToolRunnerConstructor();
-    const codeqlObject = await codeql.getCodeQLForTesting();
-    sinon.stub(codeqlObject, "getVersion").resolves((0, testing_utils_1.makeVersionInfo)("2.11.3"));
-    // safeWhich throws because of the test CodeQL object.
-    sinon.stub(safeWhich, "safeWhich").resolves("");
-    await codeqlObject.databaseInterpretResults("", [], "", "", "", "-v", "", stubConfig, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-    t.true(runnerConstructorStub.firstCall.args[1].includes("--sarif-add-baseline-file-info"), "--sarif-add-baseline-file-info should be present, but it is absent");
-});
-(0, ava_1.default)("databaseInterpretResults() does not set --sarif-add-baseline-file-info for 2.11.2", async (t) => {
-    const runnerConstructorStub = stubToolRunnerConstructor();
-    const codeqlObject = await codeql.getCodeQLForTesting();
-    sinon.stub(codeqlObject, "getVersion").resolves((0, testing_utils_1.makeVersionInfo)("2.11.2"));
-    // safeWhich throws because of the test CodeQL object.
-    sinon.stub(safeWhich, "safeWhich").resolves("");
-    await codeqlObject.databaseInterpretResults("", [], "", "", "", "-v", "", stubConfig, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-    t.false(runnerConstructorStub.firstCall.args[1].includes("--sarif-add-baseline-file-info"), "--sarif-add-baseline-file-info must be absent, but it is present");
-});
 const NEW_ANALYSIS_SUMMARY_TEST_CASES = [
    {
        codeqlVersion: "2.15.0",
@@ -1 +1 @@
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Line truncated
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truncated
@@ -23,7 +23,7 @@ var __importStar = (this && this.__importStar) || function (mod) {
    return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.wrapEnvironment = exports.generateRegistries = exports.downloadPacks = exports.getConfig = exports.getPathToParsedConfigFile = exports.initConfig = exports.parsePacks = exports.validatePackSpecification = exports.parsePacksSpecification = exports.parsePacksFromConfig = exports.calculateAugmentation = exports.getDefaultConfig = exports.getRawLanguages = exports.getLanguageAliases = exports.getLanguages = exports.getLanguagesInRepo = exports.getUnknownLanguagesError = exports.getNoLanguagesError = exports.getConfigFileDirectoryGivenMessage = exports.getConfigFileFormatInvalidMessage = exports.getConfigFileRepoFormatInvalidMessage = exports.getConfigFileDoesNotExistErrorMessage = exports.getConfigFileOutsideWorkspaceErrorMessage = exports.getLocalPathDoesNotExist = exports.getLocalPathOutsideOfRepository = exports.getPacksStrInvalid = exports.getPacksInvalid = exports.getPacksInvalidSplit = exports.getPathsInvalid = exports.getPathsIgnoreInvalid = exports.getQueryUsesInvalid = exports.getQueriesMissingUses = exports.getQueriesInvalid = exports.getDisableDefaultQueriesInvalid = exports.getNameInvalid = exports.validateAndSanitisePath = exports.defaultAugmentationProperties = void 0;
+exports.wrapEnvironment = exports.generateRegistries = exports.getConfig = exports.getPathToParsedConfigFile = exports.initConfig = exports.validatePackSpecification = exports.parsePacksSpecification = exports.parsePacksFromInput = exports.calculateAugmentation = exports.getDefaultConfig = exports.getRawLanguages = exports.getLanguageAliases = exports.getLanguages = exports.getLanguagesInRepo = exports.getUnknownLanguagesError = exports.getNoLanguagesError = exports.getConfigFileDirectoryGivenMessage = exports.getConfigFileFormatInvalidMessage = exports.getConfigFileRepoFormatInvalidMessage = exports.getConfigFileDoesNotExistErrorMessage = exports.getConfigFileOutsideWorkspaceErrorMessage = exports.getPacksStrInvalid = exports.defaultAugmentationProperties = void 0;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const perf_hooks_1 = require("perf_hooks");
@@ -31,18 +31,10 @@ const yaml = __importStar(require("js-yaml"));
 const semver = __importStar(require("semver"));
 const api = __importStar(require("./api-client"));
 const codeql_1 = require("./codeql");
-const externalQueries = __importStar(require("./external-queries"));
-const feature_flags_1 = require("./feature-flags");
 const languages_1 = require("./languages");
 const trap_caching_1 = require("./trap-caching");
 const util_1 = require("./util");
 // Property names from the user-supplied config file.
-const NAME_PROPERTY = "name";
-const DISABLE_DEFAULT_QUERIES_PROPERTY = "disable-default-queries";
-const QUERIES_PROPERTY = "queries";
-const QUERIES_USES_PROPERTY = "uses";
-const PATHS_IGNORE_PROPERTY = "paths-ignore";
-const PATHS_PROPERTY = "paths";
 const PACKS_PROPERTY = "packs";
 /**
 * The default, empty augmentation properties. This is most useful
@@ -54,284 +46,12 @@ exports.defaultAugmentationProperties = {
    packsInput: undefined,
    queriesInput: undefined,
 };
-/**
- * A list of queries from https://github.com/github/codeql that
- * we don't want to run. Disabling them here is a quicker alternative to
- * disabling them in the code scanning query suites. Queries should also
- * be disabled in the suites, and removed from this list here once the
- * bundle is updated to make those suite changes live.
- *
- * Format is a map from language to an array of path suffixes of .ql files.
- */
-const DISABLED_BUILTIN_QUERIES = {
-    csharp: [
-        "ql/src/Security Features/CWE-937/VulnerablePackage.ql",
-        "ql/src/Security Features/CWE-451/MissingXFrameOptions.ql",
-    ],
-};
-function queryIsDisabled(language, query) {
-    return (DISABLED_BUILTIN_QUERIES[language] || []).some((disabledQuery) => query.endsWith(disabledQuery));
-}
-/**
- * Asserts that the noDeclaredLanguage and multipleDeclaredLanguages fields are
- * both empty and errors if they are not.
- */
-function validateQueries(resolvedQueries) {
-    const noDeclaredLanguage = resolvedQueries.noDeclaredLanguage;
-    const noDeclaredLanguageQueries = Object.keys(noDeclaredLanguage);
-    if (noDeclaredLanguageQueries.length !== 0) {
-        throw new util_1.UserError(`${"The following queries do not declare a language. " +
-            "Their qlpack.yml files are either missing or is invalid.\n"}${noDeclaredLanguageQueries.join("\n")}`);
-    }
-    const multipleDeclaredLanguages = resolvedQueries.multipleDeclaredLanguages;
-    const multipleDeclaredLanguagesQueries = Object.keys(multipleDeclaredLanguages);
-    if (multipleDeclaredLanguagesQueries.length !== 0) {
-        throw new util_1.UserError(`${"The following queries declare multiple languages. " +
-            "Their qlpack.yml files are either missing or is invalid.\n"}${multipleDeclaredLanguagesQueries.join("\n")}`);
-    }
-}
-/**
- * Run 'codeql resolve queries' and add the results to resultMap
- *
- * If a checkout path is given then the queries are assumed to be custom queries
- * and an error will be thrown if there is anything invalid about the queries.
- * If a checkout path is not given then the queries are assumed to be builtin
- * queries, and error checking will be suppressed.
- */
-async function runResolveQueries(codeQL, resultMap, toResolve, extraSearchPath) {
-    const resolvedQueries = await codeQL.resolveQueries(toResolve, extraSearchPath);
-    if (extraSearchPath !== undefined) {
-        validateQueries(resolvedQueries);
-    }
-    for (const [language, queryPaths] of Object.entries(resolvedQueries.byLanguage)) {
-        if (resultMap[language] === undefined) {
-            resultMap[language] = {
-                builtin: [],
-                custom: [],
-            };
-        }
-        const queries = Object.keys(queryPaths).filter((q) => !queryIsDisabled(language, q));
-        if (extraSearchPath !== undefined) {
-            resultMap[language].custom.push({
-                searchPath: extraSearchPath,
-                queries,
-            });
-        }
-        else {
-            resultMap[language].builtin.push(...queries);
-        }
-    }
-}
-/**
- * Get the set of queries included by default.
- */
-async function addDefaultQueries(codeQL, languages, resultMap) {
-    const suites = languages.map((l) => `${l}-code-scanning.qls`);
-    await runResolveQueries(codeQL, resultMap, suites, undefined);
-}
-// The set of acceptable values for built-in suites from the codeql bundle
-const builtinSuites = [
-    "security-experimental",
-    "security-extended",
-    "security-and-quality",
-];
-/**
- * Determine the set of queries associated with suiteName's suites and add them to resultMap.
- * Throws an error if suiteName is not a valid builtin suite.
- */
-async function addBuiltinSuiteQueries(languages, codeQL, resultMap, suiteName, configFile) {
-    const found = builtinSuites.find((suite) => suite === suiteName);
-    if (!found) {
-        throw new util_1.UserError(getQueryUsesInvalid(configFile, suiteName));
-    }
-    if (suiteName === "security-experimental" &&
-        !(await (0, util_1.codeQlVersionAbove)(codeQL, codeql_1.CODEQL_VERSION_SECURITY_EXPERIMENTAL_SUITE))) {
-        throw new util_1.UserError(`The 'security-experimental' suite is not supported on CodeQL CLI versions earlier than
-      ${codeql_1.CODEQL_VERSION_SECURITY_EXPERIMENTAL_SUITE}. Please upgrade to CodeQL CLI version
-      ${codeql_1.CODEQL_VERSION_SECURITY_EXPERIMENTAL_SUITE} or later.`);
-    }
-    const suites = languages.map((l) => `${l}-${suiteName}.qls`);
-    await runResolveQueries(codeQL, resultMap, suites, undefined);
-}
-/**
- * Retrieve the set of queries at localQueryPath and add them to resultMap.
- */
-async function addLocalQueries(codeQL, resultMap, localQueryPath, workspacePath, configFile) {
-    // Resolve the local path against the workspace so that when this is
-    // passed to codeql it resolves to exactly the path we expect it to resolve to.
-    let absoluteQueryPath = path.join(workspacePath, localQueryPath);
-    // Check the file exists
-    if (!fs.existsSync(absoluteQueryPath)) {
-        throw new util_1.UserError(getLocalPathDoesNotExist(configFile, localQueryPath));
-    }
-    // Call this after checking file exists, because it'll fail if file doesn't exist
-    absoluteQueryPath = fs.realpathSync(absoluteQueryPath);
-    // Check the local path doesn't jump outside the repo using '..' or symlinks
-    if (!(absoluteQueryPath + path.sep).startsWith(fs.realpathSync(workspacePath) + path.sep)) {
-        throw new util_1.UserError(getLocalPathOutsideOfRepository(configFile, localQueryPath));
-    }
-    const extraSearchPath = workspacePath;
-    await runResolveQueries(codeQL, resultMap, [absoluteQueryPath], extraSearchPath);
-}
-/**
- * Retrieve the set of queries at the referenced remote repo and add them to resultMap.
- */
-async function addRemoteQueries(codeQL, resultMap, queryUses, tempDir, apiDetails, logger, configFile) {
-    let tok = queryUses.split("@");
-    if (tok.length !== 2) {
-        throw new util_1.UserError(getQueryUsesInvalid(configFile, queryUses));
-    }
-    const ref = tok[1];
-    tok = tok[0].split("/");
-    // The first token is the owner
-    // The second token is the repo
-    // The rest is a path, if there is more than one token combine them to form the full path
-    if (tok.length < 2) {
-        throw new util_1.UserError(getQueryUsesInvalid(configFile, queryUses));
-    }
-    // Check none of the parts of the repository name are empty
-    if (tok[0].trim() === "" || tok[1].trim() === "") {
-        throw new util_1.UserError(getQueryUsesInvalid(configFile, queryUses));
-    }
-    const nwo = `${tok[0]}/${tok[1]}`;
-    // Checkout the external repository
-    const checkoutPath = await externalQueries.checkoutExternalRepository(nwo, ref, apiDetails, tempDir, logger);
-    const queryPath = tok.length > 2
-        ? path.join(checkoutPath, tok.slice(2).join("/"))
-        : checkoutPath;
-    await runResolveQueries(codeQL, resultMap, [queryPath], checkoutPath);
-}
-/**
- * Parse a query 'uses' field to a discrete set of query files and update resultMap.
- *
- * The logic for parsing the string is based on what actions does for
- * parsing the 'uses' actions in the workflow file. So it can handle
- * local paths starting with './', or references to remote repos, or
- * a finite set of hardcoded terms for builtin suites.
- */
-async function parseQueryUses(languages, codeQL, resultMap, queryUses, tempDir, workspacePath, apiDetails, features, logger, configFile) {
-    queryUses = queryUses.trim();
-    if (queryUses === "") {
-        throw new util_1.UserError(getQueryUsesInvalid(configFile));
-    }
-    // Check for the local path case before we start trying to parse the repository name
-    if (queryUses.startsWith("./")) {
-        await addLocalQueries(codeQL, resultMap, queryUses.slice(2), workspacePath, configFile);
-        return;
-    }
-    // Check for one of the builtin suites
-    if (queryUses.indexOf("/") === -1 && queryUses.indexOf("@") === -1) {
-        await addBuiltinSuiteQueries(languages, codeQL, resultMap, queryUses, configFile);
-        return;
-    }
-    // Otherwise, must be a reference to another repo.
-    // If config parsing is handled in CLI, then this repo will be downloaded
-    // later by the CLI.
-    if (!(await (0, feature_flags_1.useCodeScanningConfigInCli)(codeQL, features))) {
-        await addRemoteQueries(codeQL, resultMap, queryUses, tempDir, apiDetails, logger, configFile);
-    }
-}
-// Regex validating stars in paths or paths-ignore entries.
-// The intention is to only allow ** to appear when immediately
-// preceded and followed by a slash.
-const pathStarsRegex = /.*(?:\*\*[^/].*|\*\*$|[^/]\*\*.*)/;
-// Characters that are supported by filters in workflows, but not by us.
-// See https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#filter-pattern-cheat-sheet
-const filterPatternCharactersRegex = /.*[?+[\]!].*/;
-// Checks that a paths of paths-ignore entry is valid, possibly modifying it
-// to make it valid, or if not possible then throws an error.
-function validateAndSanitisePath(originalPath, propertyName, configFile, logger) {
-    // Take a copy so we don't modify the original path, so we can still construct error messages
-    let newPath = originalPath;
-    // All paths are relative to the src root, so strip off leading slashes.
-    while (newPath.charAt(0) === "/") {
-        newPath = newPath.substring(1);
-    }
-    // Trailing ** are redundant, so strip them off
-    if (newPath.endsWith("/**")) {
-        newPath = newPath.substring(0, newPath.length - 2);
-    }
-    // An empty path is not allowed as it's meaningless
-    if (newPath === "") {
-        throw new util_1.UserError(getConfigFilePropertyError(configFile, propertyName, `"${originalPath}" is not an invalid path. ` +
-            `It is not necessary to include it, and it is not allowed to exclude it.`));
-    }
-    // Check for illegal uses of **
-    if (newPath.match(pathStarsRegex)) {
-        throw new util_1.UserError(getConfigFilePropertyError(configFile, propertyName, `"${originalPath}" contains an invalid "**" wildcard. ` +
-            `They must be immediately preceded and followed by a slash as in "/**/", or come at the start or end.`));
-    }
-    // Check for other regex characters that we don't support.
-    // Output a warning so the user knows, but otherwise continue normally.
-    if (newPath.match(filterPatternCharactersRegex)) {
-        logger.warning(getConfigFilePropertyError(configFile, propertyName, `"${originalPath}" contains an unsupported character. ` +
-            `The filter pattern characters ?, +, [, ], ! are not supported and will be matched literally.`));
-    }
-    // Ban any uses of backslash for now.
-    // This may not play nicely with project layouts.
-    // This restriction can be lifted later if we determine they are ok.
-    if (newPath.indexOf("\\") !== -1) {
-        throw new util_1.UserError(getConfigFilePropertyError(configFile, propertyName, `"${originalPath}" contains an "\\" character. These are not allowed in filters. ` +
-            `If running on windows we recommend using "/" instead for path filters.`));
-    }
-    return newPath;
-}
-exports.validateAndSanitisePath = validateAndSanitisePath;
-// An undefined configFile in some of these functions indicates that
-// the property was in a workflow file, not a config file
-function getNameInvalid(configFile) {
-    return getConfigFilePropertyError(configFile, NAME_PROPERTY, "must be a non-empty string");
-}
-exports.getNameInvalid = getNameInvalid;
-function getDisableDefaultQueriesInvalid(configFile) {
-    return getConfigFilePropertyError(configFile, DISABLE_DEFAULT_QUERIES_PROPERTY, "must be a boolean");
-}
-exports.getDisableDefaultQueriesInvalid = getDisableDefaultQueriesInvalid;
-function getQueriesInvalid(configFile) {
-    return getConfigFilePropertyError(configFile, QUERIES_PROPERTY, "must be an array");
-}
-exports.getQueriesInvalid = getQueriesInvalid;
-function getQueriesMissingUses(configFile) {
-    return getConfigFilePropertyError(configFile, QUERIES_PROPERTY, "must be an array, with each entry having a 'uses' property");
-}
-exports.getQueriesMissingUses = getQueriesMissingUses;
-function getQueryUsesInvalid(configFile, queryUses) {
-    return getConfigFilePropertyError(configFile, `${QUERIES_PROPERTY}.${QUERIES_USES_PROPERTY}`, `must be a built-in suite (${builtinSuites.join(" or ")}), a relative path, or be of the form "owner/repo[/path]@ref"${queryUses !== undefined ? `\n Found: ${queryUses}` : ""}`);
-}
-exports.getQueryUsesInvalid = getQueryUsesInvalid;
-function getPathsIgnoreInvalid(configFile) {
-    return getConfigFilePropertyError(configFile, PATHS_IGNORE_PROPERTY, "must be an array of non-empty strings");
-}
-exports.getPathsIgnoreInvalid = getPathsIgnoreInvalid;
-function getPathsInvalid(configFile) {
-    return getConfigFilePropertyError(configFile, PATHS_PROPERTY, "must be an array of non-empty strings");
-}
-exports.getPathsInvalid = getPathsInvalid;
-function getPacksRequireLanguage(lang, configFile) {
-    return getConfigFilePropertyError(configFile, PACKS_PROPERTY, `has "${lang}", but it is not a valid language.`);
-}
-function getPacksInvalidSplit(configFile) {
-    return getConfigFilePropertyError(configFile, PACKS_PROPERTY, "must split packages by language");
-}
-exports.getPacksInvalidSplit = getPacksInvalidSplit;
-function getPacksInvalid(configFile) {
-    return getConfigFilePropertyError(configFile, PACKS_PROPERTY, "must be an array of non-empty strings");
-}
-exports.getPacksInvalid = getPacksInvalid;
 function getPacksStrInvalid(packStr, configFile) {
    return configFile
        ? getConfigFilePropertyError(configFile, PACKS_PROPERTY, `"${packStr}" is not a valid pack`)
        : `"${packStr}" is not a valid pack`;
 }
 exports.getPacksStrInvalid = getPacksStrInvalid;
-function getLocalPathOutsideOfRepository(configFile, localPath) {
-    return getConfigFilePropertyError(configFile, `${QUERIES_PROPERTY}.${QUERIES_USES_PROPERTY}`, `is invalid as the local path "${localPath}" is outside of the repository`);
-}
-exports.getLocalPathOutsideOfRepository = getLocalPathOutsideOfRepository;
-function getLocalPathDoesNotExist(configFile, localPath) {
-    return getConfigFilePropertyError(configFile, `${QUERIES_PROPERTY}.${QUERIES_USES_PROPERTY}`, `is invalid as the local path "${localPath}" does not exist in the repository`);
-}
-exports.getLocalPathDoesNotExist = getLocalPathDoesNotExist;
 function getConfigFileOutsideWorkspaceErrorMessage(configFile) {
    return `The configuration file "${configFile}" is outside of the workspace`;
 }
@@ -489,53 +209,15 @@ async function getRawLanguages(languagesInput, repository, logger) {
    return { rawLanguages, autodetected };
 }
 exports.getRawLanguages = getRawLanguages;
-async function addQueriesFromWorkflow(codeQL, queriesInput, languages, resultMap, tempDir, workspacePath, apiDetails, features, logger) {
-    queriesInput = queriesInput.trim();
-    // "+" means "don't override config file" - see shouldAddConfigFileQueries
-    queriesInput = queriesInput.replace(/^\+/, "");
-    for (const query of queriesInput.split(",")) {
-        await parseQueryUses(languages, codeQL, resultMap, query, tempDir, workspacePath, apiDetails, features, logger);
-    }
-}
-// Returns true if either no queries were provided in the workflow.
-// or if the queries in the workflow were provided in "additive" mode,
-// indicating that they shouldn't override the config queries but
-// should instead be added in addition
-function shouldAddConfigFileQueries(queriesInput) {
-    if (queriesInput) {
-        return queriesInput.trimStart().slice(0, 1) === "+";
-    }
-    return true;
-}
 /**
 * Get the default config for when the user has not supplied one.
 */
-async function getDefaultConfig(languagesInput, rawQueriesInput, rawPacksInput, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, features, logger) {
+async function getDefaultConfig(languagesInput, rawQueriesInput, rawPacksInput, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, gitHubVersion, logger) {
    const languages = await getLanguages(codeQL, languagesInput, repository, logger);
-    const queries = {};
-    for (const language of languages) {
-        queries[language] = {
-            builtin: [],
-            custom: [],
-        };
-    }
-    await addDefaultQueries(codeQL, languages, queries);
    const augmentationProperties = calculateAugmentation(rawPacksInput, rawQueriesInput, languages);
-    const packs = augmentationProperties.packsInput
-        ? {
-            [languages[0]]: augmentationProperties.packsInput,
-        }
-        : {};
-    if (rawQueriesInput) {
-        await addQueriesFromWorkflow(codeQL, rawQueriesInput, languages, queries, tempDir, workspacePath, apiDetails, features, logger);
-    }
    const { trapCaches, trapCacheDownloadTime } = await downloadCacheWithTime(trapCachingEnabled, codeQL, languages, logger);
    return {
        languages,
-        queries,
-        pathsIgnore: [],
-        paths: [],
-        packs,
        originalUserInput: {},
        tempDir,
        codeQLCmd: codeQL.getPath(),
@@ -563,7 +245,7 @@ async function downloadCacheWithTime(trapCachingEnabled, codeQL, languages, logg
 /**
 * Load the config from the given file.
 */
-async function loadConfig(languagesInput, rawQueriesInput, rawPacksInput, configFile, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, features, logger) {
+async function loadConfig(languagesInput, rawQueriesInput, rawPacksInput, configFile, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, logger) {
    let parsedYAML;
    if (isLocal(configFile)) {
        // Treat the config file as relative to the workspace
@@ -573,87 +255,11 @@ async function loadConfig(languagesInput, rawQueriesInput, rawPacksInput, config
    else {
        parsedYAML = await getRemoteConfig(configFile, apiDetails);
    }
-    // Validate that the 'name' property is syntactically correct,
-    // even though we don't use the value yet.
-    if (NAME_PROPERTY in parsedYAML) {
-        if (typeof parsedYAML[NAME_PROPERTY] !== "string") {
-            throw new util_1.UserError(getNameInvalid(configFile));
-        }
-        if (parsedYAML[NAME_PROPERTY].length === 0) {
-            throw new util_1.UserError(getNameInvalid(configFile));
-        }
-    }
    const languages = await getLanguages(codeQL, languagesInput, repository, logger);
-    const queries = {};
-    for (const language of languages) {
-        queries[language] = {
-            builtin: [],
-            custom: [],
-        };
-    }
-    const pathsIgnore = [];
-    const paths = [];
-    let disableDefaultQueries = false;
-    if (DISABLE_DEFAULT_QUERIES_PROPERTY in parsedYAML) {
-        if (typeof parsedYAML[DISABLE_DEFAULT_QUERIES_PROPERTY] !== "boolean") {
-            throw new util_1.UserError(getDisableDefaultQueriesInvalid(configFile));
-        }
-        disableDefaultQueries = parsedYAML[DISABLE_DEFAULT_QUERIES_PROPERTY];
-    }
-    if (!disableDefaultQueries) {
-        await addDefaultQueries(codeQL, languages, queries);
-    }
    const augmentationProperties = calculateAugmentation(rawPacksInput, rawQueriesInput, languages);
-    const packs = parsePacks(parsedYAML[PACKS_PROPERTY] ?? {}, rawPacksInput, augmentationProperties.packsInputCombines, languages, configFile, logger);
-    // If queries were provided using `with` in the action configuration,
-    // they should take precedence over the queries in the config file
-    // unless they're prefixed with "+", in which case they supplement those
-    // in the config file.
-    if (rawQueriesInput) {
-        await addQueriesFromWorkflow(codeQL, rawQueriesInput, languages, queries, tempDir, workspacePath, apiDetails, features, logger);
-    }
-    if (shouldAddConfigFileQueries(rawQueriesInput) &&
-        QUERIES_PROPERTY in parsedYAML) {
-        const queriesArr = parsedYAML[QUERIES_PROPERTY];
-        if (!Array.isArray(queriesArr)) {
-            throw new util_1.UserError(getQueriesInvalid(configFile));
-        }
-        for (const query of queriesArr) {
-            if (typeof query[QUERIES_USES_PROPERTY] !== "string") {
-                throw new util_1.UserError(getQueriesMissingUses(configFile));
-            }
-            await parseQueryUses(languages, codeQL, queries, query[QUERIES_USES_PROPERTY], tempDir, workspacePath, apiDetails, features, logger, configFile);
-        }
-    }
-    if (PATHS_IGNORE_PROPERTY in parsedYAML) {
-        if (!Array.isArray(parsedYAML[PATHS_IGNORE_PROPERTY])) {
-            throw new util_1.UserError(getPathsIgnoreInvalid(configFile));
-        }
-        for (const ignorePath of parsedYAML[PATHS_IGNORE_PROPERTY]) {
-            if (typeof ignorePath !== "string" || ignorePath === "") {
-                throw new util_1.UserError(getPathsIgnoreInvalid(configFile));
-            }
-            pathsIgnore.push(validateAndSanitisePath(ignorePath, PATHS_IGNORE_PROPERTY, configFile, logger));
-        }
-    }
-    if (PATHS_PROPERTY in parsedYAML) {
-        if (!Array.isArray(parsedYAML[PATHS_PROPERTY])) {
-            throw new util_1.UserError(getPathsInvalid(configFile));
-        }
-        for (const includePath of parsedYAML[PATHS_PROPERTY]) {
-            if (typeof includePath !== "string" || includePath === "") {
-                throw new util_1.UserError(getPathsInvalid(configFile));
-            }
-            paths.push(validateAndSanitisePath(includePath, PATHS_PROPERTY, configFile, logger));
-        }
-    }
    const { trapCaches, trapCacheDownloadTime } = await downloadCacheWithTime(trapCachingEnabled, codeQL, languages, logger);
    return {
        languages,
-        queries,
-        pathsIgnore,
-        paths,
-        packs,
        originalUserInput: parsedYAML,
        tempDir,
        codeQLCmd: codeQL.getPath(),
@@ -722,41 +328,6 @@ const PACK_IDENTIFIER_PATTERN = (function () {
    return new RegExp(`^${component}/${component}$`);
 })();
 // Exported for testing
-function parsePacksFromConfig(packsByLanguage, languages, configFile, logger) {
-    const packs = {};
-    if (Array.isArray(packsByLanguage)) {
-        if (languages.length === 1) {
-            // single language analysis, so language is implicit
-            packsByLanguage = {
-                [languages[0]]: packsByLanguage,
-            };
-        }
-        else {
-            // this is an error since multi-language analysis requires
-            // packs split by language
-            throw new util_1.UserError(getPacksInvalidSplit(configFile));
-        }
-    }
-    for (const [lang, packsArr] of Object.entries(packsByLanguage)) {
-        if (!Array.isArray(packsArr)) {
-            throw new util_1.UserError(getPacksInvalid(configFile));
-        }
-        if (!languages.includes(lang)) {
-            // This particular language is not being analyzed in this run.
-            if (languages_1.Language[lang]) {
-                logger.info(`Ignoring packs for ${lang} since this language is not being analyzed in this run.`);
-                continue;
-            }
-            else {
-                // This language is invalid, probably a misspelling
-                throw new util_1.UserError(getPacksRequireLanguage(configFile, lang));
-            }
-        }
-        packs[lang] = packsArr.map((packStr) => validatePackSpecification(packStr, configFile));
-    }
-    return packs;
-}
-exports.parsePacksFromConfig = parsePacksFromConfig;
 function parsePacksFromInput(rawPacksInput, languages, packsInputCombines) {
    if (!rawPacksInput?.trim()) {
        return undefined;
@@ -776,11 +347,12 @@ function parsePacksFromInput(rawPacksInput, languages, packsInputCombines) {
    }
    return {
        [languages[0]]: rawPacksInput.split(",").reduce((packs, pack) => {
-            packs.push(validatePackSpecification(pack, ""));
+            packs.push(validatePackSpecification(pack));
            return packs;
        }, []),
    };
 }
+exports.parsePacksFromInput = parsePacksFromInput;
 /**
 * Validates that this package specification is syntactically correct.
 * It may not point to any real package, but after this function returns
@@ -799,9 +371,9 @@ function parsePacksFromInput(rawPacksInput, languages, packsInputCombines) {
 * @param packStr the package specification to verify.
 * @param configFile Config file to use for error reporting
 */
-function parsePacksSpecification(packStr, configFile) {
+function parsePacksSpecification(packStr) {
    if (typeof packStr !== "string") {
-        throw new util_1.UserError(getPacksStrInvalid(packStr, configFile));
+        throw new util_1.UserError(getPacksStrInvalid(packStr));
    }
    packStr = packStr.trim();
    const atIndex = packStr.indexOf("@");
@@ -822,7 +394,7 @@ function parsePacksSpecification(packStr, configFile) {
        ? packStr.slice(pathStart, pathEnd).trim()
        : undefined;
    if (!PACK_IDENTIFIER_PATTERN.test(packName)) {
-        throw new util_1.UserError(getPacksStrInvalid(packStr, configFile));
+        throw new util_1.UserError(getPacksStrInvalid(packStr));
    }
    if (version) {
        try {
@@ -830,7 +402,7 @@ function parsePacksSpecification(packStr, configFile) {
        }
        catch (e) {
            // The range string is invalid. OK to ignore the caught error
-            throw new util_1.UserError(getPacksStrInvalid(packStr, configFile));
+            throw new util_1.UserError(getPacksStrInvalid(packStr));
        }
    }
    if (packPath &&
@@ -841,11 +413,11 @@ function parsePacksSpecification(packStr, configFile) {
            // which seems more awkward.
            path.normalize(packPath).split(path.sep).join("/") !==
                packPath.split(path.sep).join("/"))) {
-        throw new util_1.UserError(getPacksStrInvalid(packStr, configFile));
+        throw new util_1.UserError(getPacksStrInvalid(packStr));
    }
    if (!packPath && pathStart) {
        // 0 length path
-        throw new util_1.UserError(getPacksStrInvalid(packStr, configFile));
+        throw new util_1.UserError(getPacksStrInvalid(packStr));
    }
    return {
        name: packName,
@@ -854,26 +426,10 @@ function parsePacksSpecification(packStr, configFile) {
    };
 }
 exports.parsePacksSpecification = parsePacksSpecification;
-function validatePackSpecification(pack, configFile) {
-    return (0, util_1.prettyPrintPack)(parsePacksSpecification(pack, configFile));
+function validatePackSpecification(pack) {
+    return (0, util_1.prettyPrintPack)(parsePacksSpecification(pack));
 }
 exports.validatePackSpecification = validatePackSpecification;
-// exported for testing
-function parsePacks(rawPacksFromConfig, rawPacksFromInput, packsInputCombines, languages, configFile, logger) {
-    const packsFomConfig = parsePacksFromConfig(rawPacksFromConfig, languages, configFile, logger);
-    const packsFromInput = parsePacksFromInput(rawPacksFromInput, languages, packsInputCombines);
-    if (!packsFromInput) {
-        return packsFomConfig;
-    }
-    if (!packsInputCombines) {
-        if (!packsFromInput) {
-            throw new util_1.UserError(getPacksInvalid(configFile));
-        }
-        return packsFromInput;
-    }
-    return combinePacks(packsFromInput, packsFomConfig);
-}
-exports.parsePacks = parsePacks;
 /**
 * The convention in this action is that an input value that is prefixed with a '+' will
 * be combined with the corresponding value in the config file.
@@ -887,18 +443,6 @@ exports.parsePacks = parsePacks;
 function shouldCombine(inputValue) {
    return !!inputValue?.trim().startsWith("+");
 }
-function combinePacks(packs1, packs2) {
-    const packs = {};
-    for (const lang of Object.keys(packs1)) {
-        packs[lang] = packs1[lang].concat(packs2[lang] || []);
-    }
-    for (const lang of Object.keys(packs2)) {
-        if (!packs[lang]) {
-            packs[lang] = packs2[lang];
-        }
-    }
-    return packs;
-}
 function dbLocationOrDefault(dbLocation, tempDir) {
    return dbLocation || path.resolve(tempDir, "codeql_databases");
 }
@@ -908,7 +452,7 @@ function dbLocationOrDefault(dbLocation, tempDir) {
 * This will parse the config from the user input if present, or generate
 * a default config. The parsed config is then stored to a known location.
 */
-async function initConfig(languagesInput, queriesInput, packsInput, registriesInput, configFile, dbLocation, configInput, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, features, logger) {
+async function initConfig(languagesInput, queriesInput, packsInput, configFile, dbLocation, configInput, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, logger) {
    let config;
    // if configInput is set, it takes precedence over configFile
    if (configInput) {
@@ -922,29 +466,10 @@ async function initConfig(languagesInput, queriesInput, packsInput, registriesIn
    // If no config file was provided create an empty one
    if (!configFile) {
        logger.debug("No configuration file was provided");
-        config = await getDefaultConfig(languagesInput, queriesInput, packsInput, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, features, logger);
+        config = await getDefaultConfig(languagesInput, queriesInput, packsInput, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, gitHubVersion, logger);
    }
    else {
-        config = await loadConfig(languagesInput, queriesInput, packsInput, configFile, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, features, logger);
-    }
-    // When using the codescanning config in the CLI, pack downloads
-    // happen in the CLI during the `database init` command, so no need
-    // to download them here.
-    await (0, feature_flags_1.logCodeScanningConfigInCli)(codeQL, features, logger);
-    if (!(await (0, feature_flags_1.useCodeScanningConfigInCli)(codeQL, features))) {
-        // The list of queries should not be empty for any language. If it is then
-        // it is a user configuration error.
-        // This check occurs in the CLI when it parses the config file.
-        for (const language of config.languages) {
-            const hasBuiltinQueries = config.queries[language]?.builtin.length > 0;
-            const hasCustomQueries = config.queries[language]?.custom.length > 0;
-            const hasPacks = (config.packs[language]?.length || 0) > 0;
-            if (!hasPacks && !hasBuiltinQueries && !hasCustomQueries) {
-                throw new util_1.UserError(`Did not detect any queries to run for ${language}. ` +
-                    "Please make sure that the default queries are enabled, or you are specifying queries to run.");
-            }
-        }
-        await downloadPacks(codeQL, config.languages, config.packs, apiDetails, registriesInput, config.tempDir, logger);
+        config = await loadConfig(languagesInput, queriesInput, packsInput, configFile, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, logger);
    }
    // Save the config so we can easily access it again in the future
    await saveConfig(config, logger);
@@ -1040,36 +565,6 @@ async function getConfig(tempDir, logger) {
    return JSON.parse(configString);
 }
 exports.getConfig = getConfig;
-async function downloadPacks(codeQL, languages, packs, apiDetails, registriesInput, tempDir, logger) {
-    // This code path is only used when config parsing occurs in the Action.
-    const { registriesAuthTokens, qlconfigFile } = await generateRegistries(registriesInput, tempDir, logger);
-    await wrapEnvironment({
-        GITHUB_TOKEN: apiDetails.auth,
-        CODEQL_REGISTRIES_AUTH: registriesAuthTokens,
-    }, async () => {
-        let numPacksDownloaded = 0;
-        logger.startGroup("Downloading packs");
-        for (const language of languages) {
-            const packsWithVersion = packs[language];
-            if (packsWithVersion?.length) {
-                logger.info(`Downloading custom packs for ${language}`);
-                const results = await codeQL.packDownload(packsWithVersion, qlconfigFile);
-                numPacksDownloaded += results.packs.length;
-                logger.info(`Downloaded: ${results.packs
-                    .map((r) => `${r.name}@${r.version || "latest"}`)
-                    .join(", ")}`);
-            }
-        }
-        if (numPacksDownloaded > 0) {
-            logger.info(`Downloaded ${numPacksDownloaded} ${numPacksDownloaded === 1 ? "pack" : "packs"}`);
-        }
-        else {
-            logger.info("No packs to download");
-        }
-        logger.endGroup();
-    });
-}
-exports.downloadPacks = downloadPacks;
 /**
 * Generate a `qlconfig.yml` file from the `registries` input.
 * This file is used by the CodeQL CLI to list the registries to use for each
@@ -1 +1 @@
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@@ -101,8 +101,8 @@ function mockListLanguages(languages) {
                return { packs: [] };
            },
        });
-        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), logger);
-        t.deepEqual(config, await configUtils.getDefaultConfig(languages, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), logger));
+        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, logger);
+        t.deepEqual(config, await configUtils.getDefaultConfig(languages, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, gitHubVersion, logger));
    });
 });
 (0, ava_1.default)("loading config saves config", async (t) => {
@@ -127,7 +127,7 @@ function mockListLanguages(languages) {
        t.false(fs.existsSync(configUtils.getPathToParsedConfigFile(tmpDir)));
        // Sanity check that getConfig returns undefined before we have called initConfig
        t.deepEqual(await configUtils.getConfig(tmpDir, logger), undefined);
-        const config1 = await configUtils.initConfig("javascript,python", undefined, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), logger);
+        const config1 = await configUtils.initConfig("javascript,python", undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, logger);
        // The saved config file should now exist
        t.true(fs.existsSync(configUtils.getPathToParsedConfigFile(tmpDir)));
        // And that same newly-initialised config should now be returned by getConfig
@@ -143,7 +143,7 @@ function mockListLanguages(languages) {
 (0, ava_1.default)("load input outside of workspace", async (t) => {
    return await (0, util_1.withTmpDir)(async (tmpDir) => {
        try {
-            await configUtils.initConfig(undefined, undefined, undefined, undefined, "../input", undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, "../input", undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, logging_1.getRunnerLogger)(true));
            throw new Error("initConfig did not throw error");
        }
        catch (err) {
@@ -156,7 +156,7 @@ function mockListLanguages(languages) {
        // no filename given, just a repo
        const configFile = "octo-org/codeql-config@main";
        try {
-            await configUtils.initConfig(undefined, undefined, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, logging_1.getRunnerLogger)(true));
            throw new Error("initConfig did not throw error");
        }
        catch (err) {
@@ -170,7 +170,7 @@ function mockListLanguages(languages) {
        const configFile = "input";
        t.false(fs.existsSync(path.join(tmpDir, configFile)));
        try {
-            await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(languages, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, logging_1.getRunnerLogger)(true));
            throw new Error("initConfig did not throw error");
        }
        catch (err) {
@@ -212,19 +212,6 @@ function mockListLanguages(languages) {
        // And the config we expect it to parse to
        const expectedConfig = {
            languages: [languages_1.Language.javascript],
-            queries: {
-                javascript: {
-                    builtin: [],
-                    custom: [
-                        {
-                            queries: ["/foo/a.ql", "/bar/b.ql"],
-                            searchPath: tmpDir,
-                        },
-                    ],
-                },
-            },
-            pathsIgnore: ["a", "b"],
-            paths: ["c/d"],
            originalUserInput: {
                name: "my config",
                "disable-default-queries": true,
@@ -236,7 +223,6 @@ function mockListLanguages(languages) {
            codeQLCmd: codeQL.getPath(),
            gitHubVersion,
            dbLocation: path.resolve(tmpDir, "codeql_databases"),
-            packs: {},
            debugMode: false,
            debugArtifactName: "my-artifact",
            debugDatabaseName: "my-db",
@@ -246,54 +232,11 @@ function mockListLanguages(languages) {
        };
        const languages = "javascript";
        const configFilePath = createConfigFile(inputFileContents, tmpDir);
-        const actualConfig = await configUtils.initConfig(languages, undefined, undefined, undefined, configFilePath, undefined, undefined, false, false, "my-artifact", "my-db", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        const actualConfig = await configUtils.initConfig(languages, undefined, undefined, configFilePath, undefined, undefined, false, false, "my-artifact", "my-db", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, logging_1.getRunnerLogger)(true));
        // Should exactly equal the object we constructed earlier
        t.deepEqual(actualConfig, expectedConfig);
    });
 });
-(0, ava_1.default)("Default queries are used", async (t) => {
-    return await (0, util_1.withTmpDir)(async (tmpDir) => {
-        // Check that the default behaviour is to add the default queries.
-        // In this case if a config file is specified but does not include
-        // the disable-default-queries field.
-        // We determine this by whether CodeQL.resolveQueries is called
-        // with the correct arguments.
-        const resolveQueriesArgs = [];
-        const codeQL = (0, codeql_1.setCodeQL)({
-            async resolveQueries(queries, extraSearchPath) {
-                resolveQueriesArgs.push({ queries, extraSearchPath });
-                return {
-                    byLanguage: {
-                        javascript: {
-                            "foo.ql": {},
-                        },
-                    },
-                    noDeclaredLanguage: {},
-                    multipleDeclaredLanguages: {},
-                };
-            },
-            async packDownload() {
-                return { packs: [] };
-            },
-        });
-        // The important point of this config is that it doesn't specify
-        // the disable-default-queries field.
-        // Any other details are hopefully irrelevant for this test.
-        const inputFileContents = `
-      paths:
-        - foo`;
-        fs.mkdirSync(path.join(tmpDir, "foo"));
-        const languages = "javascript";
-        const configFilePath = createConfigFile(inputFileContents, tmpDir);
-        await configUtils.initConfig(languages, undefined, undefined, undefined, configFilePath, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-        // Check resolve queries was called correctly
-        t.deepEqual(resolveQueriesArgs.length, 1);
-        t.deepEqual(resolveQueriesArgs[0].queries, [
-            "javascript-code-scanning.qls",
-        ]);
-        t.deepEqual(resolveQueriesArgs[0].extraSearchPath, undefined);
-    });
-});
 /**
 * Returns the provided queries, just in the right format for a resolved query
 * This way we can test by seeing which returned items are in the final
@@ -312,230 +255,6 @@ function queriesToResolvedQueryForm(queries) {
        multipleDeclaredLanguages: {},
    };
 }
-(0, ava_1.default)("Queries can be specified in config file", async (t) => {
-    return await (0, util_1.withTmpDir)(async (tmpDir) => {
-        const inputFileContents = `
-      name: my config
-      queries:
-        - uses: ./foo`;
-        const configFilePath = createConfigFile(inputFileContents, tmpDir);
-        fs.mkdirSync(path.join(tmpDir, "foo"));
-        const resolveQueriesArgs = [];
-        const codeQL = (0, codeql_1.setCodeQL)({
-            async resolveQueries(queries, extraSearchPath) {
-                resolveQueriesArgs.push({ queries, extraSearchPath });
-                return queriesToResolvedQueryForm(queries);
-            },
-            async packDownload() {
-                return { packs: [] };
-            },
-        });
-        const languages = "javascript";
-        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, configFilePath, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-        // Check resolveQueries was called correctly
-        // It'll be called once for the default queries
-        // and once for `./foo` from the config file.
-        t.deepEqual(resolveQueriesArgs.length, 2);
-        t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
-        t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}foo`));
-        // Now check that the end result contains the default queries and the query from config
-        t.deepEqual(config.queries["javascript"].builtin.length, 1);
-        t.deepEqual(config.queries["javascript"].custom.length, 1);
-        t.true(config.queries["javascript"].builtin[0].endsWith("javascript-code-scanning.qls"));
-        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}foo`));
-    });
-});
-(0, ava_1.default)("Queries from config file can be overridden in workflow file", async (t) => {
-    return await (0, util_1.withTmpDir)(async (tmpDir) => {
-        const inputFileContents = `
-      name: my config
-      queries:
-        - uses: ./foo`;
-        const configFilePath = createConfigFile(inputFileContents, tmpDir);
-        // This config item should take precedence over the config file but shouldn't affect the default queries.
-        const testQueries = "./override";
-        fs.mkdirSync(path.join(tmpDir, "foo"));
-        fs.mkdirSync(path.join(tmpDir, "override"));
-        const resolveQueriesArgs = [];
-        const codeQL = (0, codeql_1.setCodeQL)({
-            async resolveQueries(queries, extraSearchPath) {
-                resolveQueriesArgs.push({ queries, extraSearchPath });
-                return queriesToResolvedQueryForm(queries);
-            },
-            async packDownload() {
-                return { packs: [] };
-            },
-        });
-        const languages = "javascript";
-        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, configFilePath, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-        // Check resolveQueries was called correctly
-        // It'll be called once for the default queries and once for `./override`,
-        // but won't be called for './foo' from the config file.
-        t.deepEqual(resolveQueriesArgs.length, 2);
-        t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
-        t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}override`));
-        // Now check that the end result contains only the default queries and the override query
-        t.deepEqual(config.queries["javascript"].builtin.length, 1);
-        t.deepEqual(config.queries["javascript"].custom.length, 1);
-        t.true(config.queries["javascript"].builtin[0].endsWith("javascript-code-scanning.qls"));
-        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}override`));
-    });
-});
-(0, ava_1.default)("Queries in workflow file can be used in tandem with the 'disable default queries' option", async (t) => {
-    return await (0, util_1.withTmpDir)(async (tmpDir) => {
-        process.env["RUNNER_TEMP"] = tmpDir;
-        process.env["GITHUB_WORKSPACE"] = tmpDir;
-        const inputFileContents = `
-      name: my config
-      disable-default-queries: true`;
-        const configFilePath = createConfigFile(inputFileContents, tmpDir);
-        const testQueries = "./workflow-query";
-        fs.mkdirSync(path.join(tmpDir, "workflow-query"));
-        const resolveQueriesArgs = [];
-        const codeQL = (0, codeql_1.setCodeQL)({
-            async resolveQueries(queries, extraSearchPath) {
-                resolveQueriesArgs.push({ queries, extraSearchPath });
-                return queriesToResolvedQueryForm(queries);
-            },
-            async packDownload() {
-                return { packs: [] };
-            },
-        });
-        const languages = "javascript";
-        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, configFilePath, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-        // Check resolveQueries was called correctly
-        // It'll be called once for `./workflow-query`,
-        // but won't be called for the default one since that was disabled
-        t.deepEqual(resolveQueriesArgs.length, 1);
-        t.deepEqual(resolveQueriesArgs[0].queries.length, 1);
-        t.true(resolveQueriesArgs[0].queries[0].endsWith(`${path.sep}workflow-query`));
-        // Now check that the end result contains only the workflow query, and not the default one
-        t.deepEqual(config.queries["javascript"].builtin.length, 0);
-        t.deepEqual(config.queries["javascript"].custom.length, 1);
-        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}workflow-query`));
-    });
-});
-(0, ava_1.default)("Multiple queries can be specified in workflow file, no config file required", async (t) => {
-    return await (0, util_1.withTmpDir)(async (tmpDir) => {
-        fs.mkdirSync(path.join(tmpDir, "override1"));
-        fs.mkdirSync(path.join(tmpDir, "override2"));
-        const testQueries = "./override1,./override2";
-        const resolveQueriesArgs = [];
-        const codeQL = (0, codeql_1.setCodeQL)({
-            async resolveQueries(queries, extraSearchPath) {
-                resolveQueriesArgs.push({ queries, extraSearchPath });
-                return queriesToResolvedQueryForm(queries);
-            },
-            async packDownload() {
-                return { packs: [] };
-            },
-        });
-        const languages = "javascript";
-        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-        // Check resolveQueries was called correctly:
-        // It'll be called once for the default queries,
-        // and then once for each of the two queries from the workflow
-        t.deepEqual(resolveQueriesArgs.length, 3);
-        t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
-        t.deepEqual(resolveQueriesArgs[2].queries.length, 1);
-        t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}override1`));
-        t.true(resolveQueriesArgs[2].queries[0].endsWith(`${path.sep}override2`));
-        // Now check that the end result contains both the queries from the workflow, as well as the defaults
-        t.deepEqual(config.queries["javascript"].builtin.length, 1);
-        t.deepEqual(config.queries["javascript"].custom.length, 2);
-        t.true(config.queries["javascript"].builtin[0].endsWith("javascript-code-scanning.qls"));
-        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}override1`));
-        t.true(config.queries["javascript"].custom[1].queries[0].endsWith(`${path.sep}override2`));
-    });
-});
-(0, ava_1.default)("Queries in workflow file can be added to the set of queries without overriding config file", async (t) => {
-    return await (0, util_1.withTmpDir)(async (tmpDir) => {
-        process.env["RUNNER_TEMP"] = tmpDir;
-        process.env["GITHUB_WORKSPACE"] = tmpDir;
-        const inputFileContents = `
-      name: my config
-      queries:
-        - uses: ./foo`;
-        const configFilePath = createConfigFile(inputFileContents, tmpDir);
-        // These queries shouldn't override anything, because the value is prefixed with "+"
-        const testQueries = "+./additional1,./additional2";
-        fs.mkdirSync(path.join(tmpDir, "foo"));
-        fs.mkdirSync(path.join(tmpDir, "additional1"));
-        fs.mkdirSync(path.join(tmpDir, "additional2"));
-        const resolveQueriesArgs = [];
-        const codeQL = (0, codeql_1.setCodeQL)({
-            async resolveQueries(queries, extraSearchPath) {
-                resolveQueriesArgs.push({ queries, extraSearchPath });
-                return queriesToResolvedQueryForm(queries);
-            },
-            async packDownload() {
-                return { packs: [] };
-            },
-        });
-        const languages = "javascript";
-        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, configFilePath, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-        // Check resolveQueries was called correctly
-        // It'll be called once for the default queries,
-        // once for each of additional1 and additional2,
-        // and once for './foo' from the config file
-        t.deepEqual(resolveQueriesArgs.length, 4);
-        t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
-        t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}additional1`));
-        t.deepEqual(resolveQueriesArgs[2].queries.length, 1);
-        t.true(resolveQueriesArgs[2].queries[0].endsWith(`${path.sep}additional2`));
-        t.deepEqual(resolveQueriesArgs[3].queries.length, 1);
-        t.true(resolveQueriesArgs[3].queries[0].endsWith(`${path.sep}foo`));
-        // Now check that the end result contains all the queries
-        t.deepEqual(config.queries["javascript"].builtin.length, 1);
-        t.deepEqual(config.queries["javascript"].custom.length, 3);
-        t.true(config.queries["javascript"].builtin[0].endsWith("javascript-code-scanning.qls"));
-        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}additional1`));
-        t.true(config.queries["javascript"].custom[1].queries[0].endsWith(`${path.sep}additional2`));
-        t.true(config.queries["javascript"].custom[2].queries[0].endsWith(`${path.sep}foo`));
-    });
-});
-(0, ava_1.default)("Queries can be specified using config input", async (t) => {
-    return await (0, util_1.withTmpDir)(async (tmpDir) => {
-        const configInput = `
-      name: my config
-      queries:
-        - uses: ./foo
-      packs:
-        javascript:
-          - a/b@1.2.3
-        python:
-          - c/d@1.2.3
-    `;
-        fs.mkdirSync(path.join(tmpDir, "foo"));
-        const resolveQueriesArgs = [];
-        const codeQL = (0, codeql_1.setCodeQL)({
-            async resolveQueries(queries, extraSearchPath) {
-                resolveQueriesArgs.push({ queries, extraSearchPath });
-                return queriesToResolvedQueryForm(queries);
-            },
-            async packDownload() {
-                return { packs: [] };
-            },
-        });
-        // Only JS, python packs will be ignored
-        const languages = "javascript";
-        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, configInput, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-        // Check resolveQueries was called correctly
-        // It'll be called once for the default queries
-        // and once for `./foo` from the config file.
-        t.deepEqual(resolveQueriesArgs.length, 2);
-        t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
-        t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}foo`));
-        t.deepEqual(config.packs, {
-            [languages_1.Language.javascript]: ["a/b@1.2.3"],
-        });
-        // Now check that the end result contains the default queries and the query from config
-        t.deepEqual(config.queries["javascript"].builtin.length, 1);
-        t.deepEqual(config.queries["javascript"].custom.length, 1);
-        t.true(config.queries["javascript"].builtin[0].endsWith("javascript-code-scanning.qls"));
-        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}foo`));
-    });
-});
 (0, ava_1.default)("Using config input and file together, config input should be used.", async (t) => {
    return await (0, util_1.withTmpDir)(async (tmpDir) => {
        process.env["RUNNER_TEMP"] = tmpDir;
@@ -568,50 +287,8 @@ function queriesToResolvedQueryForm(queries) {
        });
        // Only JS, python packs will be ignored
        const languages = "javascript";
-        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, configFilePath, configInput, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-        // Check resolveQueries was called correctly
-        // It'll be called once for the default queries
-        // and once for `./foo` from the config file.
-        t.deepEqual(resolveQueriesArgs.length, 2);
-        t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
-        t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}foo`));
-        t.deepEqual(config.packs, {
-            [languages_1.Language.javascript]: ["a/b@1.2.3"],
-        });
-        // Now check that the end result contains the default queries and the query from config
-        t.deepEqual(config.queries["javascript"].builtin.length, 1);
-        t.deepEqual(config.queries["javascript"].custom.length, 1);
-        t.true(config.queries["javascript"].builtin[0].endsWith("javascript-code-scanning.qls"));
-        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}foo`));
-    });
-});
-(0, ava_1.default)("Invalid queries in workflow file handled correctly", async (t) => {
-    return await (0, util_1.withTmpDir)(async (tmpDir) => {
-        const queries = "foo/bar@v1@v3";
-        const languages = "javascript";
-        // This function just needs to be type-correct; it doesn't need to do anything,
-        // since we're deliberately passing in invalid data
-        const codeQL = (0, codeql_1.setCodeQL)({
-            async resolveQueries() {
-                return {
-                    byLanguage: {
-                        javascript: {},
-                    },
-                    noDeclaredLanguage: {},
-                    multipleDeclaredLanguages: {},
-                };
-            },
-            async packDownload() {
-                return { packs: [] };
-            },
-        });
-        try {
-            await configUtils.initConfig(languages, queries, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-            t.fail("initConfig did not throw error");
-        }
-        catch (err) {
-            t.deepEqual(err, new util_1.UserError(configUtils.getQueryUsesInvalid(undefined, "foo/bar@v1@v3")));
-        }
+        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, configFilePath, configInput, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, logging_1.getRunnerLogger)(true));
+        t.deepEqual(config.originalUserInput, yaml.load(configInput));
    });
 });
 (0, ava_1.default)("API client used when reading remote config", async (t) => {
@@ -652,7 +329,7 @@ function queriesToResolvedQueryForm(queries) {
        fs.mkdirSync(path.join(tmpDir, "foo/bar/dev"), { recursive: true });
        const configFile = "octo-org/codeql-config/config.yaml@main";
        const languages = "javascript";
-        await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        await configUtils.initConfig(languages, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, logging_1.getRunnerLogger)(true));
        t.assert(spyGetContents.called);
    });
 });
@@ -662,7 +339,7 @@ function queriesToResolvedQueryForm(queries) {
        mockGetContents(dummyResponse);
        const repoReference = "octo-org/codeql-config/config.yaml@main";
        try {
-            await configUtils.initConfig(undefined, undefined, undefined, undefined, repoReference, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, repoReference, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, logging_1.getRunnerLogger)(true));
            throw new Error("initConfig did not throw error");
        }
        catch (err) {
@@ -678,7 +355,7 @@ function queriesToResolvedQueryForm(queries) {
        mockGetContents(dummyResponse);
        const repoReference = "octo-org/codeql-config/config.yaml@main";
        try {
-            await configUtils.initConfig(undefined, undefined, undefined, undefined, repoReference, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, repoReference, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, logging_1.getRunnerLogger)(true));
            throw new Error("initConfig did not throw error");
        }
        catch (err) {
@@ -698,7 +375,7 @@ function queriesToResolvedQueryForm(queries) {
            },
        });
        try {
-            await configUtils.initConfig(undefined, undefined, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, logging_1.getRunnerLogger)(true));
            throw new Error("initConfig did not throw error");
        }
        catch (err) {
@@ -710,7 +387,7 @@ function queriesToResolvedQueryForm(queries) {
    return await (0, util_1.withTmpDir)(async (tmpDir) => {
        const languages = "rubbish,english";
        try {
-            await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, logging_1.getRunnerLogger)(true));
            throw new Error("initConfig did not throw error");
        }
        catch (err) {
@@ -718,194 +395,18 @@ function queriesToResolvedQueryForm(queries) {
        }
    });
 });
-(0, ava_1.default)("Config specifies packages", async (t) => {
-    return await (0, util_1.withTmpDir)(async (tmpDir) => {
-        const codeQL = (0, codeql_1.setCodeQL)({
-            async resolveQueries() {
-                return {
-                    byLanguage: {},
-                    noDeclaredLanguage: {},
-                    multipleDeclaredLanguages: {},
-                };
-            },
-            async packDownload() {
-                return { packs: [] };
-            },
-        });
-        const inputFileContents = `
-      name: my config
-      disable-default-queries: true
-      packs:
-        - a/b@1.2.3
-      `;
-        const configFile = path.join(tmpDir, "codeql-config.yaml");
-        fs.writeFileSync(configFile, inputFileContents);
-        const languages = "javascript";
-        const { packs } = await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-        t.deepEqual(packs, {
-            [languages_1.Language.javascript]: ["a/b@1.2.3"],
-        });
-    });
-});
-(0, ava_1.default)("Config specifies packages for multiple languages", async (t) => {
-    return await (0, util_1.withTmpDir)(async (tmpDir) => {
-        const codeQL = (0, codeql_1.setCodeQL)({
-            async resolveQueries() {
-                return {
-                    byLanguage: {
-                        cpp: { "/foo/a.ql": {} },
-                    },
-                    noDeclaredLanguage: {},
-                    multipleDeclaredLanguages: {},
-                };
-            },
-            async packDownload() {
-                return { packs: [] };
-            },
-        });
-        const inputFileContents = `
-      name: my config
-      disable-default-queries: true
-      queries:
-      - uses: ./foo
-      packs:
-        javascript:
-          - a/b@1.2.3
-        python:
-          - c/d@1.2.3
-      `;
-        const configFile = path.join(tmpDir, "codeql-config.yaml");
-        fs.writeFileSync(configFile, inputFileContents);
-        fs.mkdirSync(path.join(tmpDir, "foo"));
-        const languages = "javascript,python,cpp";
-        const { packs, queries } = await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-        t.deepEqual(packs, {
-            [languages_1.Language.javascript]: ["a/b@1.2.3"],
-            [languages_1.Language.python]: ["c/d@1.2.3"],
-        });
-        t.deepEqual(queries, {
-            cpp: {
-                builtin: [],
-                custom: [
-                    {
-                        queries: ["/foo/a.ql"],
-                        searchPath: tmpDir,
-                    },
-                ],
-            },
-            javascript: {
-                builtin: [],
-                custom: [],
-            },
-            python: {
-                builtin: [],
-                custom: [],
-            },
-        });
-    });
-});
-function doInvalidInputTest(testName, inputFileContents, expectedErrorMessageGenerator) {
-    (0, ava_1.default)(`load invalid input - ${testName}`, async (t) => {
-        return await (0, util_1.withTmpDir)(async (tmpDir) => {
-            const codeQL = (0, codeql_1.setCodeQL)({
-                async resolveQueries() {
-                    return {
-                        byLanguage: {},
-                        noDeclaredLanguage: {},
-                        multipleDeclaredLanguages: {},
-                    };
-                },
-                async packDownload() {
-                    return { packs: [] };
-                },
-            });
-            const languages = "javascript";
-            const configFile = "input";
-            const inputFile = path.join(tmpDir, configFile);
-            fs.writeFileSync(inputFile, inputFileContents, "utf8");
-            try {
-                await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
-                throw new Error("initConfig did not throw error");
-            }
-            catch (err) {
-                t.deepEqual(err, new util_1.UserError(expectedErrorMessageGenerator(inputFile)));
-            }
-        });
-    });
-}
-doInvalidInputTest("name invalid type", `
-  name:
-    - foo: bar`, configUtils.getNameInvalid);
-doInvalidInputTest("disable-default-queries invalid type", `disable-default-queries: 42`, configUtils.getDisableDefaultQueriesInvalid);
-doInvalidInputTest("queries invalid type", `queries: foo`, configUtils.getQueriesInvalid);
-doInvalidInputTest("paths-ignore invalid type", `paths-ignore: bar`, configUtils.getPathsIgnoreInvalid);
-doInvalidInputTest("paths invalid type", `paths: 17`, configUtils.getPathsInvalid);
-doInvalidInputTest("queries uses invalid type", `
-  queries:
-  - uses:
-      - hello: world`, configUtils.getQueriesMissingUses);
-function doInvalidQueryUsesTest(input, expectedErrorMessageGenerator) {
-    // Invalid contents of a "queries.uses" field.
-    // Should fail with the expected error message
-    const inputFileContents = `
-    name: my config
-    queries:
-      - name: foo
-        uses: ${input}`;
-    doInvalidInputTest(`queries uses "${input}"`, inputFileContents, expectedErrorMessageGenerator);
-}
-// Various "uses" fields, and the errors they should produce
-doInvalidQueryUsesTest("''", (c) => configUtils.getQueryUsesInvalid(c, undefined));
-doInvalidQueryUsesTest("foo/bar", (c) => configUtils.getQueryUsesInvalid(c, "foo/bar"));
-doInvalidQueryUsesTest("foo/bar@v1@v2", (c) => configUtils.getQueryUsesInvalid(c, "foo/bar@v1@v2"));
-doInvalidQueryUsesTest("foo@master", (c) => configUtils.getQueryUsesInvalid(c, "foo@master"));
-doInvalidQueryUsesTest("https://github.com/foo/bar@master", (c) => configUtils.getQueryUsesInvalid(c, "https://github.com/foo/bar@master"));
-doInvalidQueryUsesTest("./foo", (c) => configUtils.getLocalPathDoesNotExist(c, "foo"));
-doInvalidQueryUsesTest("./..", (c) => configUtils.getLocalPathOutsideOfRepository(c, ".."));
-const validPaths = [
-    "foo",
-    "foo/",
-    "foo/**",
-    "foo/**/",
-    "foo/**/**",
-    "foo/**/bar/**/baz",
-    "**/",
-    "**/foo",
-    "/foo",
-];
-const invalidPaths = ["a/***/b", "a/**b", "a/b**", "**"];
-(0, ava_1.default)("path validations", (t) => {
-    // Dummy values to pass to validateAndSanitisePath
-    const propertyName = "paths";
-    const configFile = "./.github/codeql/config.yml";
-    for (const validPath of validPaths) {
-        t.truthy(configUtils.validateAndSanitisePath(validPath, propertyName, configFile, (0, logging_1.getRunnerLogger)(true)));
-    }
-    for (const invalidPath of invalidPaths) {
-        t.throws(() => configUtils.validateAndSanitisePath(invalidPath, propertyName, configFile, (0, logging_1.getRunnerLogger)(true)));
-    }
-});
-(0, ava_1.default)("path sanitisation", (t) => {
-    // Dummy values to pass to validateAndSanitisePath
-    const propertyName = "paths";
-    const configFile = "./.github/codeql/config.yml";
-    // Valid paths are not modified
-    t.deepEqual(configUtils.validateAndSanitisePath("foo/bar", propertyName, configFile, (0, logging_1.getRunnerLogger)(true)), "foo/bar");
-    // Trailing stars are stripped
-    t.deepEqual(configUtils.validateAndSanitisePath("foo/**", propertyName, configFile, (0, logging_1.getRunnerLogger)(true)), "foo/");
-});
 /**
 * Test macro for ensuring the packs block is valid
 */
 const parsePacksMacro = ava_1.default.macro({
-    exec: (t, packsByLanguage, languages, expected) => t.deepEqual(configUtils.parsePacksFromConfig(packsByLanguage, languages, "/a/b", mockLogger), expected),
+    exec: (t, packsInput, languages, expected) => t.deepEqual(configUtils.parsePacksFromInput(packsInput, languages, false), expected),
    title: (providedTitle = "") => `Parse Packs: ${providedTitle}`,
 });
 /**
 * Test macro for testing when the packs block is invalid
 */
 const parsePacksErrorMacro = ava_1.default.macro({
-    exec: (t, packsByLanguage, languages, expected) => t.throws(() => configUtils.parsePacksFromConfig(packsByLanguage, languages, "/a/b", {}), {
+    exec: (t, packsInput, languages, expected) => t.throws(() => configUtils.parsePacksFromInput(packsInput, languages, false), {
        message: expected,
    }),
    title: (providedTitle = "") => `Parse Packs Error: ${providedTitle}`,
@@ -914,29 +415,18 @@ const parsePacksErrorMacro = ava_1.default.macro({
 * Test macro for testing when the packs block is invalid
 */
 const invalidPackNameMacro = ava_1.default.macro({
-    exec: (t, name) => parsePacksErrorMacro.exec(t, { [languages_1.Language.cpp]: [name] }, [languages_1.Language.cpp], new RegExp(`The configuration file "/a/b" is invalid: property "packs" "${name}" is not a valid pack`)),
+    exec: (t, name) => parsePacksErrorMacro.exec(t, name, [languages_1.Language.cpp], new RegExp(`^"${name}" is not a valid pack$`)),
    title: (_providedTitle, arg) => `Invalid pack string: ${arg}`,
 });
-(0, ava_1.default)("no packs", parsePacksMacro, {}, [], {});
-(0, ava_1.default)("two packs", parsePacksMacro, ["a/b", "c/d@1.2.3"], [languages_1.Language.cpp], {
+(0, ava_1.default)("no packs", parsePacksMacro, "", [], undefined);
+(0, ava_1.default)("two packs", parsePacksMacro, "a/b,c/d@1.2.3", [languages_1.Language.cpp], {
    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
 });
-(0, ava_1.default)("two packs with spaces", parsePacksMacro, [" a/b ", " c/d@1.2.3 "], [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
-});
-(0, ava_1.default)("two packs with language", parsePacksMacro, {
-    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
-    [languages_1.Language.java]: ["d/e", "f/g@1.2.3"],
-}, [languages_1.Language.cpp, languages_1.Language.java, languages_1.Language.csharp], {
-    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
-    [languages_1.Language.java]: ["d/e", "f/g@1.2.3"],
-});
-(0, ava_1.default)("two packs with unused language in config", parsePacksMacro, {
-    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
-    [languages_1.Language.java]: ["d/e", "f/g@1.2.3"],
-}, [languages_1.Language.cpp, languages_1.Language.csharp], {
+(0, ava_1.default)("two packs with spaces", parsePacksMacro, " a/b , c/d@1.2.3 ", [languages_1.Language.cpp], {
    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
 });
+(0, ava_1.default)("two packs with language", parsePacksErrorMacro, "a/b,c/d@1.2.3", [languages_1.Language.cpp, languages_1.Language.java], new RegExp("Cannot specify a 'packs' input in a multi-language analysis. " +
+    "Use a codeql-config.yml file instead and specify packs by language."));
 (0, ava_1.default)("packs with other valid names", parsePacksMacro, [
    // ranges are ok
    "c/d@1.0",
@@ -954,7 +444,7 @@ const invalidPackNameMacro = ava_1.default.macro({
    // this is valid, too. It will fail if it doesn't match a path
    // (globbing is not done)
    "c/d@1.2.3:+*)_(",
-], [languages_1.Language.cpp], {
+].join(","), [languages_1.Language.cpp], {
    [languages_1.Language.cpp]: [
        "c/d@1.0",
        "c/d@~1.0.0",
@@ -968,8 +458,6 @@ const invalidPackNameMacro = ava_1.default.macro({
        "c/d@1.2.3:+*)_(",
    ],
 });
-(0, ava_1.default)("no language", parsePacksErrorMacro, ["a/b@1.2.3"], [languages_1.Language.java, languages_1.Language.python], /The configuration file "\/a\/b" is invalid: property "packs" must split packages by language/);
-(0, ava_1.default)("not an array", parsePacksErrorMacro, { [languages_1.Language.cpp]: "c/d" }, [languages_1.Language.cpp], /The configuration file "\/a\/b" is invalid: property "packs" must be an array of non-empty strings/);
 (0, ava_1.default)(invalidPackNameMacro, "c"); // all packs require at least a scope and a name
 (0, ava_1.default)(invalidPackNameMacro, "c-/d");
 (0, ava_1.default)(invalidPackNameMacro, "-c/d");
@@ -1022,45 +510,7 @@ const packSpecPrettyPrintingMacro = ava_1.default.macro({
    version: undefined,
    path: "abc/def",
 });
-/**
- * Test macro for testing the packs block and the packs input
- */
-function parseInputAndConfigMacro(t, packsFromConfig, packsFromInput, languages, expected) {
-    t.deepEqual(configUtils.parsePacks(packsFromConfig, packsFromInput, !!packsFromInput?.trim().startsWith("+"), // coerce to boolean
-    languages, "/a/b", mockLogger), expected);
-}
-parseInputAndConfigMacro.title = (providedTitle) => `Parse Packs input and config: ${providedTitle}`;
 const mockLogger = (0, logging_1.getRunnerLogger)(true);
-function parseInputAndConfigErrorMacro(t, packsFromConfig, packsFromInput, languages, packsFromInputOverride, expected) {
-    t.throws(() => {
-        configUtils.parsePacks(packsFromConfig, packsFromInput, packsFromInputOverride, languages, "/a/b", mockLogger);
-    }, {
-        message: expected,
-    });
-}
-parseInputAndConfigErrorMacro.title = (providedTitle) => `Parse Packs input and config Error: ${providedTitle}`;
-(0, ava_1.default)("input only", parseInputAndConfigMacro, {}, " c/d ", [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: ["c/d"],
-});
-(0, ava_1.default)("input only with multiple", parseInputAndConfigMacro, {}, "a/b , c/d@1.2.3", [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
-});
-(0, ava_1.default)("input only with +", parseInputAndConfigMacro, {}, "  +  a/b , c/d@1.2.3 ", [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
-});
-(0, ava_1.default)("config only", parseInputAndConfigMacro, ["a/b", "c/d"], "  ", [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: ["a/b", "c/d"],
-});
-(0, ava_1.default)("input overrides", parseInputAndConfigMacro, ["a/b", "c/d"], " e/f, g/h@1.2.3 ", [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: ["e/f", "g/h@1.2.3"],
-});
-(0, ava_1.default)("input and config", parseInputAndConfigMacro, ["a/b", "c/d"], " +e/f, g/h@1.2.3 ", [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: ["e/f", "g/h@1.2.3", "a/b", "c/d"],
-});
-(0, ava_1.default)("input with no language", parseInputAndConfigErrorMacro, {}, "c/d", [], false, /No languages specified/);
-(0, ava_1.default)("input with two languages", parseInputAndConfigErrorMacro, {}, "c/d", [languages_1.Language.cpp, languages_1.Language.csharp], false, /multi-language analysis/);
-(0, ava_1.default)("input with + only", parseInputAndConfigErrorMacro, {}, " + ", [languages_1.Language.cpp], true, /remove the '\+'/);
-(0, ava_1.default)("input with invalid pack name", parseInputAndConfigErrorMacro, {}, " xxx", [languages_1.Language.cpp], false, /"xxx" is not a valid pack/);
 const calculateAugmentationMacro = ava_1.default.macro({
    exec: async (t, _title, rawPacksInput, rawQueriesInput, languages, expectedAugmentationProperties) => {
        const actualAugmentationProperties = configUtils.calculateAugmentation(rawPacksInput, rawQueriesInput, languages);
@@ -1109,125 +559,6 @@ const calculateAugmentationErrorMacro = ava_1.default.macro({
 (0, ava_1.default)(calculateAugmentationErrorMacro, "Packs input with multiple languages", "   +  a/b, c/d ", undefined, [languages_1.Language.javascript, languages_1.Language.java], /Cannot specify a 'packs' input in a multi-language analysis/);
 (0, ava_1.default)(calculateAugmentationErrorMacro, "Packs input with no languages", "   +  a/b, c/d ", undefined, [], /No languages specified/);
 (0, ava_1.default)(calculateAugmentationErrorMacro, "Invalid packs", " a-pack-without-a-scope ", undefined, [languages_1.Language.javascript], /"a-pack-without-a-scope" is not a valid pack/);
-(0, ava_1.default)("downloadPacks-no-registries", async (t) => {
-    return await (0, util_1.withTmpDir)(async (tmpDir) => {
-        const packDownloadStub = sinon.stub();
-        packDownloadStub.callsFake((packs) => ({
-            packs,
-        }));
-        const codeQL = (0, codeql_1.setCodeQL)({
-            packDownload: packDownloadStub,
-        });
-        const logger = (0, logging_1.getRunnerLogger)(true);
-        // packs are supplied for go, java, and python
-        // analyzed languages are java, javascript, and python
-        await configUtils.downloadPacks(codeQL, [languages_1.Language.javascript, languages_1.Language.java, languages_1.Language.python], {
-            java: ["a", "b"],
-            go: ["c", "d"],
-            python: ["e", "f"],
-        }, sampleApiDetails, undefined, // registriesAuthTokens
-        tmpDir, logger);
-        // Expecting packs to be downloaded once for java and once for python
-        t.deepEqual(packDownloadStub.callCount, 2);
-        // no config file was created, so pass `undefined` as the config file path
-        t.deepEqual(packDownloadStub.firstCall.args, [["a", "b"], undefined]);
-        t.deepEqual(packDownloadStub.secondCall.args, [["e", "f"], undefined]);
-    });
-});
-(0, ava_1.default)("downloadPacks-with-registries", async (t) => {
-    // same thing, but this time include a registries block and
-    // associated env vars
-    return await (0, util_1.withTmpDir)(async (tmpDir) => {
-        process.env.GITHUB_TOKEN = "not-a-token";
-        process.env.CODEQL_REGISTRIES_AUTH = undefined;
-        const logger = (0, logging_1.getRunnerLogger)(true);
-        const registriesInput = yaml.dump([
-            {
-                // no slash
-                url: "http://ghcr.io",
-                packages: ["codeql/*", "codeql-testing/*"],
-                token: "not-a-token",
-            },
-            {
-                // with slash
-                url: "https://containers.GHEHOSTNAME1/v2/",
-                packages: "semmle/*",
-                token: "still-not-a-token",
-            },
-        ]);
-        // append a slash to the first url
-        const registries = yaml.load(registriesInput);
-        const expectedRegistries = registries.map((r, i) => ({
-            packages: r.packages,
-            url: i === 0 ? `${r.url}/` : r.url,
-        }));
-        const expectedConfigFile = path.join(tmpDir, "qlconfig.yml");
-        const packDownloadStub = sinon.stub();
-        packDownloadStub.callsFake((packs, configFile) => {
-            t.deepEqual(configFile, expectedConfigFile);
-            // verify the env vars were set correctly
-            t.deepEqual(process.env.GITHUB_TOKEN, sampleApiDetails.auth);
-            t.deepEqual(process.env.CODEQL_REGISTRIES_AUTH, "http://ghcr.io=not-a-token,https://containers.GHEHOSTNAME1/v2/=still-not-a-token");
-            // verify the config file contents were set correctly
-            const config = yaml.load(fs.readFileSync(configFile, "utf8"));
-            t.deepEqual(config.registries, expectedRegistries);
-            return {
-                packs,
-            };
-        });
-        const codeQL = (0, codeql_1.setCodeQL)({
-            packDownload: packDownloadStub,
-            getVersion: () => Promise.resolve((0, testing_utils_1.makeVersionInfo)("2.10.5")),
-        });
-        // packs are supplied for go, java, and python
-        // analyzed languages are java, javascript, and python
-        await configUtils.downloadPacks(codeQL, [languages_1.Language.javascript, languages_1.Language.java, languages_1.Language.python], {
-            java: ["a", "b"],
-            go: ["c", "d"],
-            python: ["e", "f"],
-        }, sampleApiDetails, registriesInput, tmpDir, logger);
-        // Same packs are downloaded as in previous test
-        t.deepEqual(packDownloadStub.callCount, 2);
-        t.deepEqual(packDownloadStub.firstCall.args, [
-            ["a", "b"],
-            expectedConfigFile,
-        ]);
-        t.deepEqual(packDownloadStub.secondCall.args, [
-            ["e", "f"],
-            expectedConfigFile,
-        ]);
-        // Verify that the env vars were unset.
-        t.deepEqual(process.env.GITHUB_TOKEN, "not-a-token");
-        t.deepEqual(process.env.CODEQL_REGISTRIES_AUTH, undefined);
-    });
-});
-(0, ava_1.default)("downloadPacks-with-registries fails with invalid registries block", async (t) => {
-    // same thing, but this time include a registries block and
-    // associated env vars
-    return await (0, util_1.withTmpDir)(async (tmpDir) => {
-        process.env.GITHUB_TOKEN = "not-a-token";
-        process.env.CODEQL_REGISTRIES_AUTH = "not-a-registries-auth";
-        const logger = (0, logging_1.getRunnerLogger)(true);
-        const registriesInput = yaml.dump([
-            {
-                // missing url property
-                packages: ["codeql/*", "codeql-testing/*"],
-                token: "not-a-token",
-            },
-            {
-                url: "https://containers.GHEHOSTNAME1/v2/",
-                packages: "semmle/*",
-                token: "still-not-a-token",
-            },
-        ]);
-        const codeQL = (0, codeql_1.setCodeQL)({
-            getVersion: () => Promise.resolve((0, testing_utils_1.makeVersionInfo)("2.10.4")),
-        });
-        await t.throwsAsync(async () => {
-            return await configUtils.downloadPacks(codeQL, [languages_1.Language.javascript, languages_1.Language.java, languages_1.Language.python], {}, sampleApiDetails, registriesInput, tmpDir, logger);
-        }, { instanceOf: Error }, "Invalid 'registries' input. Must be an array of objects with 'url' and 'packages' properties.");
-    });
-});
 (0, ava_1.default)("no generateRegistries when registries is undefined", async (t) => {
    return await (0, util_1.withTmpDir)(async (tmpDir) => {
        const registriesInput = undefined;
@@ -1 +1 @@
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@@ -51,15 +51,11 @@ const testApiDetails = {
 function getTestConfig(tmpDir) {
    return {
        languages: [languages_1.Language.javascript],
-        queries: {},
-        pathsIgnore: [],
-        paths: [],
        originalUserInput: {},
        tempDir: tmpDir,
        codeQLCmd: "foo",
        gitHubVersion: { type: util_1.GitHubVariant.DOTCOM },
        dbLocation: tmpDir,
-        packs: {},
        debugMode: false,
        debugArtifactName: util_1.DEFAULT_DEBUG_ARTIFACT_NAME,
        debugDatabaseName: util_1.DEFAULT_DEBUG_DATABASE_NAME,
@@ -1 +1 @@
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@@ -1,6 +1,6 @@
 {
-    "bundleVersion": "codeql-bundle-v2.15.3",
-    "cliVersion": "2.15.3",
-    "priorBundleVersion": "codeql-bundle-v2.15.2",
-    "priorCliVersion": "2.15.2"
+    "bundleVersion": "codeql-bundle-v2.15.5",
+    "cliVersion": "2.15.5",
+    "priorBundleVersion": "codeql-bundle-v2.15.4",
+    "priorCliVersion": "2.15.4"
 }
@@ -1,72 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.buildCheckoutURL = exports.checkoutExternalRepository = void 0;
-const fs = __importStar(require("fs"));
-const path = __importStar(require("path"));
-const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
-const safeWhich = __importStar(require("@chrisgavin/safe-which"));
-const util_1 = require("./util");
-/**
- * Check out repository at the given ref, and return the directory of the checkout.
- */
-async function checkoutExternalRepository(repository, ref, apiDetails, tempDir, logger) {
-    logger.info(`Checking out ${repository}`);
-    const checkoutLocation = path.join(tempDir, repository, ref);
-    if (!checkoutLocation.startsWith(tempDir)) {
-        // this still permits locations that mess with sibling repositories in `tempDir`, but that is acceptable
-        throw new util_1.UserError(`'${repository}@${ref}' is not a valid repository and reference.`);
-    }
-    if (!fs.existsSync(checkoutLocation)) {
-        const repoCloneURL = buildCheckoutURL(repository, apiDetails);
-        await new toolrunner.ToolRunner(await safeWhich.safeWhich("git"), [
-            "clone",
-            repoCloneURL,
-            checkoutLocation,
-        ]).exec();
-        await new toolrunner.ToolRunner(await safeWhich.safeWhich("git"), [
-            `--work-tree=${checkoutLocation}`,
-            `--git-dir=${checkoutLocation}/.git`,
-            "checkout",
-            ref,
-        ]).exec();
-    }
-    return checkoutLocation;
-}
-exports.checkoutExternalRepository = checkoutExternalRepository;
-function buildCheckoutURL(repository, apiDetails) {
-    const repoCloneURL = new URL(apiDetails.url);
-    if (apiDetails.externalRepoAuth !== undefined) {
-        repoCloneURL.username = "x-access-token";
-        repoCloneURL.password = apiDetails.externalRepoAuth;
-    }
-    if (!repoCloneURL.pathname.endsWith("/")) {
-        repoCloneURL.pathname += "/";
-    }
-    repoCloneURL.pathname += `${repository}`;
-    return repoCloneURL.toString();
-}
-exports.buildCheckoutURL = buildCheckoutURL;
-//# sourceMappingURL=external-queries.js.map
@@ -1 +0,0 @@
-{"version":3,"file":"external-queries.js","sourceRoot":"","sources":["../src/external-queries.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,uCAAyB;AACzB,2CAA6B;AAE7B,yEAA2D;AAC3D,kEAAoD;AAIpD,iCAAmC;AAEnC;;GAEG;AACI,KAAK,UAAU,0BAA0B,CAC9C,UAAkB,EAClB,GAAW,EACX,UAAwC,EACxC,OAAe,EACf,MAAc;IAEd,MAAM,CAAC,IAAI,CAAC,gBAAgB,UAAU,EAAE,CAAC,CAAC;IAE1C,MAAM,gBAAgB,GAAG,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,UAAU,EAAE,GAAG,CAAC,CAAC;IAE7D,IAAI,CAAC,gBAAgB,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;QAC1C,wGAAwG;QACxG,MAAM,IAAI,gBAAS,CACjB,IAAI,UAAU,IAAI,GAAG,4CAA4C,CAClE,CAAC;IACJ,CAAC;IAED,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,gBAAgB,CAAC,EAAE,CAAC;QACrC,MAAM,YAAY,GAAG,gBAAgB,CAAC,UAAU,EAAE,UAAU,CAAC,CAAC;QAC9D,MAAM,IAAI,UAAU,CAAC,UAAU,CAAC,MAAM,SAAS,CAAC,SAAS,CAAC,KAAK,CAAC,EAAE;YAChE,OAAO;YACP,YAAY;YACZ,gBAAgB;SACjB,CAAC,CAAC,IAAI,EAAE,CAAC;QACV,MAAM,IAAI,UAAU,CAAC,UAAU,CAAC,MAAM,SAAS,CAAC,SAAS,CAAC,KAAK,CAAC,EAAE;YAChE,eAAe,gBAAgB,EAAE;YACjC,aAAa,gBAAgB,OAAO;YACpC,UAAU;YACV,GAAG;SACJ,CAAC,CAAC,IAAI,EAAE,CAAC;IACZ,CAAC;IAED,OAAO,gBAAgB,CAAC;AAC1B,CAAC;AAlCD,gEAkCC;AAED,SAAgB,gBAAgB,CAC9B,UAAkB,EAClB,UAAwC;IAExC,MAAM,YAAY,GAAG,IAAI,GAAG,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;IAC7C,IAAI,UAAU,CAAC,gBAAgB,KAAK,SAAS,EAAE,CAAC;QAC9C,YAAY,CAAC,QAAQ,GAAG,gBAAgB,CAAC;QACzC,YAAY,CAAC,QAAQ,GAAG,UAAU,CAAC,gBAAgB,CAAC;IACtD,CAAC;IACD,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;QACzC,YAAY,CAAC,QAAQ,IAAI,GAAG,CAAC;IAC/B,CAAC;IACD,YAAY,CAAC,QAAQ,IAAI,GAAG,UAAU,EAAE,CAAC;IACzC,OAAO,YAAY,CAAC,QAAQ,EAAE,CAAC;AACjC,CAAC;AAdD,4CAcC"}
@@ -1,143 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const fs = __importStar(require("fs"));
-const path = __importStar(require("path"));
-const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
-const safeWhich = __importStar(require("@chrisgavin/safe-which"));
-const ava_1 = __importDefault(require("ava"));
-const externalQueries = __importStar(require("./external-queries"));
-const logging_1 = require("./logging");
-const testing_utils_1 = require("./testing-utils");
-const util = __importStar(require("./util"));
-(0, testing_utils_1.setupTests)(ava_1.default);
-(0, ava_1.default)("checkoutExternalQueries", async (t) => {
-    await util.withTmpDir(async (tmpDir) => {
-        // Create a test repo in a subdir of the temp dir.
-        // It should have a default branch with two commits after the initial commit, where
-        // - the first commit contains files 'a' and 'b'
-        // - the second commit contains only 'a'
-        // Place the repo in a subdir because we're going to checkout a copy in tmpDir
-        const testRepoBaseDir = path.join(tmpDir, "test-repo-dir");
-        const repoName = "some/repo";
-        const repoPath = path.join(testRepoBaseDir, repoName);
-        const repoGitDir = path.join(repoPath, ".git");
-        // Run the given git command, and return the output.
-        // Passes --git-dir and --work-tree.
-        // Any stderr output is suppressed until the command fails.
-        const runGit = async function (command) {
-            let stdout = "";
-            let stderr = "";
-            command = [
-                `--git-dir=${repoGitDir}`,
-                `--work-tree=${repoPath}`,
-                ...command,
-            ];
-            console.log(`Running: git ${command.join(" ")}`);
-            try {
-                await new toolrunner.ToolRunner(await safeWhich.safeWhich("git"), command, {
-                    silent: true,
-                    listeners: {
-                        stdout: (data) => {
-                            stdout += data.toString();
-                        },
-                        stderr: (data) => {
-                            stderr += data.toString();
-                        },
-                    },
-                }).exec();
-            }
-            catch (e) {
-                console.log(`Command failed: git ${command.join(" ")}`);
-                process.stderr.write(stderr);
-                throw e;
-            }
-            return stdout.trim();
-        };
-        fs.mkdirSync(repoPath, { recursive: true });
-        await runGit(["init", repoPath]);
-        await runGit(["config", "user.email", "test@github.com"]);
-        await runGit(["config", "user.name", "Test Test"]);
-        await runGit(["config", "commit.gpgsign", "false"]);
-        fs.writeFileSync(path.join(repoPath, "a"), "a content");
-        await runGit(["add", "a"]);
-        await runGit(["commit", "-m", "commit1"]);
-        fs.writeFileSync(path.join(repoPath, "b"), "b content");
-        await runGit(["add", "b"]);
-        await runGit(["commit", "-m", "commit1"]);
-        const commit1Sha = await runGit(["rev-parse", "HEAD"]);
-        fs.unlinkSync(path.join(repoPath, "b"));
-        await runGit(["add", "b"]);
-        await runGit(["commit", "-m", "commit2"]);
-        const commit2Sha = await runGit(["rev-parse", "HEAD"]);
-        // Checkout the first commit, which should contain 'a' and 'b'
-        t.false(fs.existsSync(path.join(tmpDir, repoName)));
-        await externalQueries.checkoutExternalRepository(repoName, commit1Sha, {
-            url: `file://${testRepoBaseDir}`,
-            externalRepoAuth: "",
-            apiURL: undefined,
-        }, tmpDir, (0, logging_1.getRunnerLogger)(true));
-        t.true(fs.existsSync(path.join(tmpDir, repoName)));
-        t.true(fs.existsSync(path.join(tmpDir, repoName, commit1Sha)));
-        t.true(fs.existsSync(path.join(tmpDir, repoName, commit1Sha, "a")));
-        t.true(fs.existsSync(path.join(tmpDir, repoName, commit1Sha, "b")));
-        // Checkout the second commit as well, which should only contain 'a'
-        t.false(fs.existsSync(path.join(tmpDir, repoName, commit2Sha)));
-        await externalQueries.checkoutExternalRepository(repoName, commit2Sha, {
-            url: `file://${testRepoBaseDir}`,
-            externalRepoAuth: "",
-            apiURL: undefined,
-        }, tmpDir, (0, logging_1.getRunnerLogger)(true));
-        t.true(fs.existsSync(path.join(tmpDir, repoName, commit2Sha)));
-        t.true(fs.existsSync(path.join(tmpDir, repoName, commit2Sha, "a")));
-        t.false(fs.existsSync(path.join(tmpDir, repoName, commit2Sha, "b")));
-    });
-});
-(0, ava_1.default)("buildCheckoutURL", (t) => {
-    t.deepEqual(externalQueries.buildCheckoutURL("foo/bar", {
-        url: "https://github.com",
-        externalRepoAuth: undefined,
-        apiURL: undefined,
-    }), "https://github.com/foo/bar");
-    t.deepEqual(externalQueries.buildCheckoutURL("foo/bar", {
-        url: "https://github.example.com/",
-        externalRepoAuth: undefined,
-        apiURL: undefined,
-    }), "https://github.example.com/foo/bar");
-    t.deepEqual(externalQueries.buildCheckoutURL("foo/bar", {
-        url: "https://github.com",
-        externalRepoAuth: "abc",
-        apiURL: undefined,
-    }), "https://x-access-token:abc@github.com/foo/bar");
-    t.deepEqual(externalQueries.buildCheckoutURL("foo/bar", {
-        url: "https://github.example.com/",
-        externalRepoAuth: "abc",
-        apiURL: undefined,
-    }), "https://x-access-token:abc@github.example.com/foo/bar");
-});
-//# sourceMappingURL=external-queries.test.js.map
@@ -1 +0,0 @@
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@@ -23,7 +23,7 @@ var __importStar = (this && this.__importStar) || function (mod) {
    return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.logCodeScanningConfigInCli = exports.useCodeScanningConfigInCli = exports.Features = exports.FEATURE_FLAGS_FILE_NAME = exports.featureConfig = exports.Feature = exports.CODEQL_VERSION_FINE_GRAINED_PARALLELISM = exports.CODEQL_VERSION_BUNDLE_SEMANTICALLY_VERSIONED = void 0;
+exports.isPythonDependencyInstallationDisabled = exports.Features = exports.FEATURE_FLAGS_FILE_NAME = exports.featureConfig = exports.Feature = exports.CODEQL_VERSION_FINE_GRAINED_PARALLELISM = exports.CODEQL_VERSION_BUNDLE_SEMANTICALLY_VERSIONED = void 0;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const semver = __importStar(require("semver"));
@@ -48,11 +48,11 @@ exports.CODEQL_VERSION_FINE_GRAINED_PARALLELISM = "2.15.1";
 */
 var Feature;
 (function (Feature) {
-    Feature["CliConfigFileEnabled"] = "cli_config_file_enabled";
    Feature["CodeqlJavaLombokEnabled"] = "codeql_java_lombok_enabled";
    Feature["CppDependencyInstallation"] = "cpp_dependency_installation_enabled";
    Feature["DisableKotlinAnalysisEnabled"] = "disable_kotlin_analysis_enabled";
    Feature["DisablePythonDependencyInstallationEnabled"] = "disable_python_dependency_installation_enabled";
+    Feature["PythonDefaultIsToSkipDependencyInstallationEnabled"] = "python_default_is_to_skip_dependency_installation_enabled";
    Feature["EvaluatorFineGrainedParallelismEnabled"] = "evaluator_fine_grained_parallelism_enabled";
    Feature["ExportDiagnosticsEnabled"] = "export_diagnostics_enabled";
    Feature["QaTelemetryEnabled"] = "qa_telemetry_enabled";
@@ -73,11 +73,6 @@ exports.featureConfig = {
        minimumVersion: undefined,
        defaultValue: false,
    },
-    [Feature.CliConfigFileEnabled]: {
-        envVar: "CODEQL_PASS_CONFIG_TO_CLI",
-        minimumVersion: "2.11.6",
-        defaultValue: true,
-    },
    [Feature.EvaluatorFineGrainedParallelismEnabled]: {
        envVar: "CODEQL_EVALUATOR_FINE_GRAINED_PARALLELISM",
        minimumVersion: exports.CODEQL_VERSION_FINE_GRAINED_PARALLELISM,
@@ -103,6 +98,15 @@ exports.featureConfig = {
        minimumVersion: undefined,
        defaultValue: false,
    },
+    [Feature.PythonDefaultIsToSkipDependencyInstallationEnabled]: {
+        // we can reuse the same environment variable as above. If someone has set it to
+        // `true` in their workflow this means dependencies are not installed, setting it to
+        // `false` means dependencies _will_ be installed. The same semantics are applied
+        // here!
+        envVar: "CODEQL_ACTION_DISABLE_PYTHON_DEPENDENCY_INSTALLATION",
+        minimumVersion: "2.16.0",
+        defaultValue: false,
+    },
 };
 exports.FEATURE_FLAGS_FILE_NAME = "cached-feature-flags.json";
 /**
@@ -332,21 +336,9 @@ class GitHubFeatureFlags {
        }
    }
 }
-/**
- * @returns Whether the Action should generate a code scanning config file
- * that gets passed to the CLI.
- */
-async function useCodeScanningConfigInCli(codeql, features) {
-    return await features.getValue(Feature.CliConfigFileEnabled, codeql);
+async function isPythonDependencyInstallationDisabled(codeql, features) {
+    return ((await features.getValue(Feature.DisablePythonDependencyInstallationEnabled, codeql)) ||
+        (await features.getValue(Feature.PythonDefaultIsToSkipDependencyInstallationEnabled, codeql)));
 }
-exports.useCodeScanningConfigInCli = useCodeScanningConfigInCli;
-async function logCodeScanningConfigInCli(codeql, features, logger) {
-    if (await useCodeScanningConfigInCli(codeql, features)) {
-        logger.info("Code Scanning configuration file being processed in the codeql CLI.");
-    }
-    else {
-        logger.info("Code Scanning configuration file being processed in the codeql-action.");
-    }
-}
-exports.logCodeScanningConfigInCli = logCodeScanningConfigInCli;
+exports.isPythonDependencyInstallationDisabled = isPythonDependencyInstallationDisabled;
 //# sourceMappingURL=feature-flags.js.map
@@ -1 +1 @@
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+{"version":3,"file":"feature-flags.js","sourceRoot":"","sources":["../src/feature-flags.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,uCAAyB;AACzB,2CAA6B;AAE7B,+CAAiC;AAEjC,6CAA4C;AAE5C,0DAA4C;AAG5C,6CAA+B;AAE/B,MAAM,mCAAmC,GAAG,yBAAyB,CAAC;AACtE,MAAM,mCAAmC,GAAG,UAAU,CAAC;AAEvD;;GAEG;AACU,QAAA,4CAA4C,GAAG,QAAQ,CAAC;AAErE;;;GAGG;AACU,QAAA,uCAAuC,GAAG,QAAQ,CAAC;AAgBhE;;;;GAIG;AACH,IAAY,OASX;AATD,WAAY,OAAO;IACjB,iEAAsD,CAAA;IACtD,4EAAiE,CAAA;IACjE,2EAAgE,CAAA;IAChE,wGAA6F,CAAA;IAC7F,2HAAgH,CAAA;IAChH,gGAAqF,CAAA;IACrF,kEAAuD,CAAA;IACvD,sDAA2C,CAAA;AAC7C,CAAC,EATW,OAAO,uBAAP,OAAO,QASlB;AAEY,QAAA,aAAa,GAGtB;IACF,CAAC,OAAO,CAAC,uBAAuB,CAAC,EAAE;QACjC,MAAM,EAAE,oBAAoB;QAC5B,cAAc,EAAE,QAAQ;QACxB,YAAY,EAAE,KAAK;KACpB;IACD,CAAC,OAAO,CAAC,yBAAyB,CAAC,EAAE;QACnC,MAAM,EAAE,+CAA+C;QACvD,cAAc,EAAE,QAAQ;QACxB,YAAY,EAAE,KAAK;KACpB;IACD,CAAC,OAAO,CAAC,4BAA4B,CAAC,EAAE;QACtC,MAAM,EAAE,gCAAgC;QACxC,cAAc,EAAE,SAAS;QACzB,YAAY,EAAE,KAAK;KACpB;IACD,CAAC,OAAO,CAAC,sCAAsC,CAAC,EAAE;QAChD,MAAM,EAAE,2CAA2C;QACnD,cAAc,EAAE,+CAAuC;QACvD,YAAY,EAAE,KAAK;KACpB;IACD,CAAC,OAAO,CAAC,wBAAwB,CAAC,EAAE;QAClC,MAAM,EAAE,kCAAkC;QAC1C,cAAc,EAAE,QAAQ;QACxB,YAAY,EAAE,IAAI;KACnB;IACD,CAAC,OAAO,CAAC,kBAAkB,CAAC,EAAE;QAC5B,MAAM,EAAE,4BAA4B;QACpC,cAAc,EAAE,SAAS;QACzB,YAAY,EAAE,KAAK;KACpB;IACD,CAAC,OAAO,CAAC,0CAA0C,CAAC,EAAE;QACpD,MAAM,EAAE,sDAAsD;QAC9D,iFAAiF;QACjF,gFAAgF;QAChF,4EAA4E;QAC5E,oFAAoF;QACpF,4EAA4E;QAC5E,cAAc,EAAE,SAAS;QACzB,YAAY,EAAE,KAAK;KACpB;IACD,CAAC,OAAO,CAAC,kDAAkD,CAAC,EAAE;QAC5D,gFAAgF;QAChF,oFAAoF;QACpF,iFAAiF;QACjF,QAAQ;QACR,MAAM,EAAE,sDAAsD;QAC9D,cAAc,EAAE,QAAQ;QACxB,YAAY,EAAE,KAAK;KACpB;CACF,CAAC;AAUW,QAAA,uBAAuB,GAAG,2BAA2B,CAAC;AAEnE;;;;GAIG;AACH,MAAa,QAAQ;IAGnB,YACE,aAAiC,EACjC,aAA4B,EAC5B,OAAe,EACE,MAAc;QAAd,WAAM,GAAN,MAAM,CAAQ;QAE/B,IAAI,CAAC,kBAAkB,GAAG,IAAI,kBAAkB,CAC9C,aAAa,EACb,aAAa,EACb,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,+BAAuB,CAAC,EAC3C,MAAM,CACP,CAAC;IACJ,CAAC;IAED,KAAK,CAAC,oBAAoB,CACxB,OAA2B;QAE3B,OAAO,MAAM,IAAI,CAAC,kBAAkB,CAAC,oBAAoB,CAAC,OAAO,CAAC,CAAC;IACrE,CAAC;IAED;;;;;;;;;;;OAWG;IACH,KAAK,CAAC,QAAQ,CAAC,OAAgB,EAAE,MAAe;QAC9C,IAAI,CAAC,MAAM,IAAI,qBAAa,CAAC,OAAO,CAAC,CAAC,cAAc,EAAE,CAAC;YACrD,MAAM,IAAI,KAAK,CACb,8DAA8D,OAAO,2CAA2C,CACjH,CAAC;QACJ,CAAC;QAED,MAAM,MAAM,GAAG,CACb,OAAO,CAAC,GAAG,CAAC,qBAAa,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,IAAI,EAAE,CACjD,CAAC,iBAAiB,EAAE,CAAC;QAEtB,sFAAsF;QACtF,IAAI,MAAM,KAAK,OAAO,EAAE,CAAC;YACvB,IAAI,CAAC,MAAM,CAAC,KAAK,CACf,WAAW,OAAO,6CAA6C,qBAAa,CAAC,OAAO,CAAC,CAAC,MAAM,GAAG,CAChG,CAAC;YACF,OAAO,KAAK,CAAC;QACf,CAAC;QAED,yEAAyE;QACzE,MAAM,cAAc,GAAG,qBAAa,CAAC,OAAO,CAAC,CAAC,cAAc,CAAC;QAC7D,IAAI,MAAM,IAAI,cAAc,EAAE,CAAC;YAC7B,IAAI,CAAC,CAAC,MAAM,IAAI,CAAC,kBAAkB,CAAC,MAAM,EAAE,cAAc,CAAC,CAAC,EAAE,CAAC;gBAC7D,IAAI,CAAC,MAAM,CAAC,KAAK,CACf,WAAW,OAAO,wEAAwE;oBACxF,WAAW,cAAc,GAAG,CAC/B,CAAC;gBACF,OAAO,KAAK,CAAC;YACf,CAAC;iBAAM,CAAC;gBACN,IAAI,CAAC,MAAM,CAAC,KAAK,CACf,sBACE,CAAC,MAAM,MAAM,CAAC,UAAU,EAAE,CAAC,CAAC,OAC9B,6BAA6B;oBAC3B,WAAW,cAAc,gBAAgB,OAAO,GAAG,CACtD,CAAC;YACJ,CAAC;QACH,CAAC;QAED,8EAA8E;QAC9E,IAAI,MAAM,KAAK,MAAM,EAAE,CAAC;YACtB,IAAI,CAAC,MAAM,CAAC,KAAK,CACf,WAAW,OAAO,4CAA4C,qBAAa,CAAC,OAAO,CAAC,CAAC,MAAM,GAAG,CAC/F,CAAC;YACF,OAAO,IAAI,CAAC;QACd,CAAC;QAED,gDAAgD;QAChD,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,kBAAkB,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC;QACjE,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;YAC3B,IAAI,CAAC,MAAM,CAAC,KAAK,CACf,WAAW,OAAO,OAChB,QAAQ,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,UACzB,sBAAsB,CACvB,CAAC;YACF,OAAO,QAAQ,CAAC;QAClB,CAAC;QAED,MAAM,YAAY,GAAG,qBAAa,CAAC,OAAO,CAAC,CAAC,YAAY,CAAC;QACzD,IAAI,CAAC,MAAM,CAAC,KAAK,CACf,WAAW,OAAO,OAChB,YAAY,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,UAC7B,4BAA4B,CAC7B,CAAC;QACF,OAAO,YAAY,CAAC;IACtB,CAAC;CACF;AApGD,4BAoGC;AAED,MAAM,kBAAkB;IAOtB,YACmB,aAAiC,EACjC,aAA4B,EAC5B,gBAAwB,EACxB,MAAc;QAHd,kBAAa,GAAb,aAAa,CAAoB;QACjC,kBAAa,GAAb,aAAa,CAAe;QAC5B,qBAAgB,GAAhB,gBAAgB,CAAQ;QACxB,WAAM,GAAN,MAAM,CAAQ;QAE/B,IAAI,CAAC,6BAA6B,GAAG,KAAK,CAAC,CAAC,2BAA2B;IACzE,CAAC;IAEO,4BAA4B,CAAC,CAAS;QAC5C,IACE,CAAC,CAAC,CAAC,UAAU,CAAC,mCAAmC,CAAC;YAClD,CAAC,CAAC,CAAC,QAAQ,CAAC,mCAAmC,CAAC,EAChD,CAAC;YACD,OAAO,SAAS,CAAC;QACnB,CAAC;QACD,MAAM,OAAO,GAAG,CAAC;aACd,SAAS,CACR,mCAAmC,CAAC,MAAM,EAC1C,CAAC,CAAC,MAAM,GAAG,mCAAmC,CAAC,MAAM,CACtD;aACA,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;QAEtB,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE,CAAC;YAC3B,IAAI,CAAC,MAAM,CAAC,OAAO,CACjB,yBAAyB,CAAC,iDAAiD,CAC5E,CAAC;YACF,OAAO,SAAS,CAAC;QACnB,CAAC;QACD,OAAO,OAAO,CAAC;IACjB,CAAC;IAED,KAAK,CAAC,oBAAoB,CACxB,OAA2B;QAE3B,IAAI,OAAO,KAAK,IAAI,CAAC,aAAa,CAAC,MAAM,EAAE,CAAC;YAC1C,OAAO,MAAM,IAAI,CAAC,0BAA0B,EAAE,CAAC;QACjD,CAAC;QACD,OAAO;YACL,UAAU,EAAE,QAAQ,CAAC,UAAU;YAC/B,OAAO,EAAE,QAAQ,CAAC,aAAa;SAChC,CAAC;IACJ,CAAC;IAED,KAAK,CAAC,0BAA0B;QAC9B,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,cAAc,EAAE,CAAC;QAE7C,MAAM,6BAA6B,GAAG,MAAM,CAAC,OAAO,CAAC,QAAQ,CAAC;aAC3D,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,SAAS,CAAC,EAAE,EAAE,CACtB,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,4BAA4B,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAC7D;aACA,MAAM,CACL,CAAC,CAAC,EAAE,EAAE,CACJ,CAAC,KAAK,SAAS;YACf,mEAAmE;YACnE,MAAM,CAAC,GAAG,CAAC,CAAC,EAAE,oDAA4C,CAAC,CAC9D;aACA,GAAG,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truncated
@@ -192,16 +192,16 @@ for (const feature of Object.keys(feature_flags_1.featureConfig)) {
        (0, testing_utils_1.mockFeatureFlagApiEndpoint)(200, expectedFeatureEnablement);
        const cachedFeatureFlags = path.join(tmpDir, feature_flags_1.FEATURE_FLAGS_FILE_NAME);
        t.false(fs.existsSync(cachedFeatureFlags), "Feature flag cached file should not exist before getting feature flags");
-        t.true(await features.getValue(feature_flags_1.Feature.CliConfigFileEnabled, includeCodeQlIfRequired(feature_flags_1.Feature.CliConfigFileEnabled)), "Feature flag should be enabled initially");
+        t.true(await features.getValue(feature_flags_1.Feature.QaTelemetryEnabled, includeCodeQlIfRequired(feature_flags_1.Feature.QaTelemetryEnabled)), "Feature flag should be enabled initially");
        t.true(fs.existsSync(cachedFeatureFlags), "Feature flag cached file should exist after getting feature flags");
        const actualFeatureEnablement = JSON.parse(fs.readFileSync(cachedFeatureFlags, "utf8"));
        t.deepEqual(actualFeatureEnablement, expectedFeatureEnablement);
        // now test that we actually use the feature flag cache instead of the server
-        actualFeatureEnablement[feature_flags_1.Feature.CliConfigFileEnabled] = false;
+        actualFeatureEnablement[feature_flags_1.Feature.QaTelemetryEnabled] = false;
        fs.writeFileSync(cachedFeatureFlags, JSON.stringify(actualFeatureEnablement));
        // delete the in memory cache so that we are forced to use the cached file
        features.gitHubFeatureFlags.cachedApiResponse = undefined;
-        t.false(await features.getValue(feature_flags_1.Feature.CliConfigFileEnabled, includeCodeQlIfRequired(feature_flags_1.Feature.CliConfigFileEnabled)), "Feature flag should be enabled after reading from cached file");
+        t.false(await features.getValue(feature_flags_1.Feature.QaTelemetryEnabled, includeCodeQlIfRequired(feature_flags_1.Feature.QaTelemetryEnabled)), "Feature flag should be enabled after reading from cached file");
    });
 });
 (0, ava_1.default)("Environment variable can override feature flag cache", async (t) => {
@@ -210,10 +210,10 @@ for (const feature of Object.keys(feature_flags_1.featureConfig)) {
        const expectedFeatureEnablement = initializeFeatures(true);
        (0, testing_utils_1.mockFeatureFlagApiEndpoint)(200, expectedFeatureEnablement);
        const cachedFeatureFlags = path.join(tmpDir, feature_flags_1.FEATURE_FLAGS_FILE_NAME);
-        t.true(await features.getValue(feature_flags_1.Feature.CliConfigFileEnabled, includeCodeQlIfRequired(feature_flags_1.Feature.CliConfigFileEnabled)), "Feature flag should be enabled initially");
+        t.true(await features.getValue(feature_flags_1.Feature.QaTelemetryEnabled, includeCodeQlIfRequired(feature_flags_1.Feature.QaTelemetryEnabled)), "Feature flag should be enabled initially");
        t.true(fs.existsSync(cachedFeatureFlags), "Feature flag cached file should exist after getting feature flags");
-        process.env.CODEQL_PASS_CONFIG_TO_CLI = "false";
-        t.false(await features.getValue(feature_flags_1.Feature.CliConfigFileEnabled, includeCodeQlIfRequired(feature_flags_1.Feature.CliConfigFileEnabled)), "Feature flag should be disabled after setting env var");
+        process.env.CODEQL_ACTION_QA_TELEMETRY = "false";
+        t.false(await features.getValue(feature_flags_1.Feature.QaTelemetryEnabled, includeCodeQlIfRequired(feature_flags_1.Feature.QaTelemetryEnabled)), "Feature flag should be disabled after setting env var");
    });
 });
 for (const variant of [util_1.GitHubVariant.GHAE, util_1.GitHubVariant.GHES]) {
@@ -1 +1 @@
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Line truncated
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truncated
@@ -49,10 +49,6 @@ async function maybeUploadFailedSarif(config, repositoryNwo, features, logger) {
    if (!config.codeQLCmd) {
        return { upload_failed_run_skipped_because: "CodeQL command not found" };
    }
-    const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
-    if (!(await (0, util_1.codeQlVersionAbove)(codeql, codeql_1.CODEQL_VERSION_EXPORT_FAILED_SARIF))) {
-        return { upload_failed_run_skipped_because: "Unsupported by CodeQL CLI" };
-    }
    const workflow = await (0, workflow_1.getWorkflow)(logger);
    const jobName = (0, util_1.getRequiredEnvParam)("GITHUB_JOB");
    const matrix = (0, util_1.parseMatrixInput)(actionsUtil.getRequiredInput("matrix"));
@@ -64,6 +60,7 @@ async function maybeUploadFailedSarif(config, repositoryNwo, features, logger) {
    const category = (0, workflow_1.getCategoryInputOrThrow)(workflow, jobName, matrix);
    const checkoutPath = (0, workflow_1.getCheckoutPathInputOrThrow)(workflow, jobName, matrix);
    const databasePath = config.dbLocation;
+    const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
    const sarifFile = "../codeql-failed-run.sarif";
    // If there is no database or the feature flag is off, we run 'export diagnostics'
    if (databasePath === undefined ||
@@ -1 +1 @@
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truncated
@@ -92,14 +92,14 @@ const workflow = __importStar(require("./workflow"));
        },
        {
            name: "Initialize CodeQL",
-            uses: "github/codeql-action/init@v2",
+            uses: "github/codeql-action/init@v3",
            with: {
                languages: "javascript",
            },
        },
        {
            name: "Perform CodeQL Analysis",
-            uses: "github/codeql-action/analyze@v2",
+            uses: "github/codeql-action/analyze@v3",
            with: {
                category: "my-category",
            },
@@ -115,14 +115,14 @@ const workflow = __importStar(require("./workflow"));
        },
        {
            name: "Initialize CodeQL",
-            uses: "github/codeql-action/init@v2",
+            uses: "github/codeql-action/init@v3",
            with: {
                languages: "javascript",
            },
        },
        {
            name: "Perform CodeQL Analysis",
-            uses: "github/codeql-action/analyze@v2",
+            uses: "github/codeql-action/analyze@v3",
            with: {
                category: "my-category",
            },
@@ -141,14 +141,14 @@ const workflow = __importStar(require("./workflow"));
        },
        {
            name: "Initialize CodeQL",
-            uses: "github/codeql-action/init@v2",
+            uses: "github/codeql-action/init@v3",
            with: {
                languages: "javascript",
            },
        },
        {
            name: "Perform CodeQL Analysis",
-            uses: "github/codeql-action/analyze@v2",
+            uses: "github/codeql-action/analyze@v3",
            with: {
                category: "my-category",
            },
@@ -194,14 +194,14 @@ for (const { uploadInput, shouldUpload } of UPLOAD_INPUT_TEST_CASES) {
            },
            {
                name: "Initialize CodeQL",
-                uses: "github/codeql-action/init@v2",
+                uses: "github/codeql-action/init@v3",
                with: {
                    languages: "javascript",
                },
            },
            {
                name: "Perform CodeQL Analysis",
-                uses: "github/codeql-action/analyze@v2",
+                uses: "github/codeql-action/analyze@v3",
                with: {
                    category: "my-category",
                    upload: uploadInput,
@@ -225,14 +225,14 @@ for (const { uploadInput, shouldUpload } of UPLOAD_INPUT_TEST_CASES) {
        },
        {
            name: "Initialize CodeQL",
-            uses: "github/codeql-action/init@v2",
+            uses: "github/codeql-action/init@v3",
            with: {
                languages: "javascript",
            },
        },
        {
            name: "Perform CodeQL Analysis",
-            uses: "github/codeql-action/analyze@v2",
+            uses: "github/codeql-action/analyze@v3",
            with: {
                category: "/language:${{ matrix.language }}",
            },
@@ -251,14 +251,14 @@ for (const { uploadInput, shouldUpload } of UPLOAD_INPUT_TEST_CASES) {
        },
        {
            name: "Initialize CodeQL",
-            uses: "github/codeql-action/init@v2",
+            uses: "github/codeql-action/init@v3",
            with: {
                languages: "javascript",
            },
        },
        {
            name: "Perform CodeQL Analysis",
-            uses: "github/codeql-action/analyze@v2",
+            uses: "github/codeql-action/analyze@v3",
            with: {
                upload: "${{ matrix.language != 'csharp' }}",
            },
@@ -118,7 +118,6 @@ async function run() {
    const gitHubVersion = await (0, api_client_1.getGitHubVersion)();
    (0, util_1.checkGitHubVersionInRange)(gitHubVersion, logger);
    const repositoryNwo = (0, repository_1.parseRepositoryNwo)((0, util_1.getRequiredEnvParam)("GITHUB_REPOSITORY"));
-    const registriesInput = (0, actions_util_1.getOptionalInput)("registries");
    const features = new feature_flags_1.Features(gitHubVersion, repositoryNwo, (0, actions_util_1.getTemporaryDirectory)(), logger);
    core.exportVariable(environment_1.EnvVar.JOB_RUN_UUID, (0, uuid_1.v4)());
    try {
@@ -137,16 +136,16 @@ async function run() {
            logger.info("Detected no issues with the code scanning workflow.");
        }
        core.endGroup();
-        config = await (0, init_1.initConfig)((0, actions_util_1.getOptionalInput)("languages"), (0, actions_util_1.getOptionalInput)("queries"), (0, actions_util_1.getOptionalInput)("packs"), registriesInput, (0, actions_util_1.getOptionalInput)("config-file"), (0, actions_util_1.getOptionalInput)("db-location"), (0, actions_util_1.getOptionalInput)("config"), getTrapCachingEnabled(), 
+        config = await (0, init_1.initConfig)((0, actions_util_1.getOptionalInput)("languages"), (0, actions_util_1.getOptionalInput)("queries"), (0, actions_util_1.getOptionalInput)("packs"), (0, actions_util_1.getOptionalInput)("config-file"), (0, actions_util_1.getOptionalInput)("db-location"), (0, actions_util_1.getOptionalInput)("config"), getTrapCachingEnabled(), 
        // Debug mode is enabled if:
        // - The `init` Action is passed `debug: true`.
        // - Actions step debugging is enabled (e.g. by [enabling debug logging for a rerun](https://docs.github.com/en/actions/managing-workflow-runs/re-running-workflows-and-jobs#re-running-all-the-jobs-in-a-workflow),
        //   or by setting the `ACTIONS_STEP_DEBUG` secret to `true`).
-        (0, actions_util_1.getOptionalInput)("debug") === "true" || core.isDebug(), (0, actions_util_1.getOptionalInput)("debug-artifact-name") || util_1.DEFAULT_DEBUG_ARTIFACT_NAME, (0, actions_util_1.getOptionalInput)("debug-database-name") || util_1.DEFAULT_DEBUG_DATABASE_NAME, repositoryNwo, (0, actions_util_1.getTemporaryDirectory)(), codeql, (0, util_1.getRequiredEnvParam)("GITHUB_WORKSPACE"), gitHubVersion, apiDetails, features, logger);
+        (0, actions_util_1.getOptionalInput)("debug") === "true" || core.isDebug(), (0, actions_util_1.getOptionalInput)("debug-artifact-name") || util_1.DEFAULT_DEBUG_ARTIFACT_NAME, (0, actions_util_1.getOptionalInput)("debug-database-name") || util_1.DEFAULT_DEBUG_DATABASE_NAME, repositoryNwo, (0, actions_util_1.getTemporaryDirectory)(), codeql, (0, util_1.getRequiredEnvParam)("GITHUB_WORKSPACE"), gitHubVersion, apiDetails, logger);
        await (0, init_1.checkInstallPython311)(config.languages, codeql);
        if (config.languages.includes(languages_1.Language.python) &&
            (0, actions_util_1.getRequiredInput)("setup-python-dependencies") === "true") {
-            if (await features.getValue(feature_flags_1.Feature.DisablePythonDependencyInstallationEnabled, codeql)) {
+            if (await (0, feature_flags_1.isPythonDependencyInstallationDisabled)(codeql, features)) {
                logger.info("Skipping python dependency installation");
            }
            else {
@@ -246,11 +245,16 @@ async function run() {
            }
        }
        // Disable Python dependency extraction if feature flag set
-        if (await features.getValue(feature_flags_1.Feature.DisablePythonDependencyInstallationEnabled, codeql)) {
+        if (await (0, feature_flags_1.isPythonDependencyInstallationDisabled)(codeql, features)) {
            core.exportVariable("CODEQL_EXTRACTOR_PYTHON_DISABLE_LIBRARY_EXTRACTION", "true");
        }
+        else {
+            // From 2.16.0 the default for the python extractor is to not perform any library
+            // extraction, so we need to set this flag to enable it.
+            core.exportVariable("CODEQL_EXTRACTOR_PYTHON_FORCE_ENABLE_LIBRARY_EXTRACTION_UNTIL_2_17_0", "true");
+        }
        const sourceRoot = path.resolve((0, util_1.getRequiredEnvParam)("GITHUB_WORKSPACE"), (0, actions_util_1.getOptionalInput)("source-root") || "");
-        const tracerConfig = await (0, init_1.runInit)(codeql, config, sourceRoot, "Runner.Worker.exe", registriesInput, features, apiDetails, logger);
+        const tracerConfig = await (0, init_1.runInit)(codeql, config, sourceRoot, "Runner.Worker.exe", (0, actions_util_1.getOptionalInput)("registries"), apiDetails, logger);
        if (tracerConfig !== undefined) {
            for (const [key, value] of Object.entries(tracerConfig.env)) {
                core.exportVariable(key, value);
@@ -1 +1 @@
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truncated
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Line truncated
@@ -28,10 +28,8 @@ const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
 const safeWhich = __importStar(require("@chrisgavin/safe-which"));
-const analysisPaths = __importStar(require("./analysis-paths"));
 const codeql_1 = require("./codeql");
 const configUtils = __importStar(require("./config-utils"));
-const feature_flags_1 = require("./feature-flags");
 const languages_1 = require("./languages");
 const tracer_config_1 = require("./tracer-config");
 const util = __importStar(require("./util"));
@@ -43,33 +41,24 @@ async function initCodeQL(toolsInput, apiDetails, tempDir, variant, defaultCliVe
    return { codeql, toolsDownloadDurationMs, toolsSource, toolsVersion };
 }
 exports.initCodeQL = initCodeQL;
-async function initConfig(languagesInput, queriesInput, packsInput, registriesInput, configFile, dbLocation, configInput, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, features, logger) {
+async function initConfig(languagesInput, queriesInput, packsInput, configFile, dbLocation, configInput, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, logger) {
    logger.startGroup("Load language configuration");
-    const config = await configUtils.initConfig(languagesInput, queriesInput, packsInput, registriesInput, configFile, dbLocation, configInput, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, features, logger);
-    analysisPaths.printPathFiltersWarning(config, logger);
+    const config = await configUtils.initConfig(languagesInput, queriesInput, packsInput, configFile, dbLocation, configInput, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, logger);
+    printPathFiltersWarning(config, logger);
    logger.endGroup();
    return config;
 }
 exports.initConfig = initConfig;
-async function runInit(codeql, config, sourceRoot, processName, registriesInput, features, apiDetails, logger) {
+async function runInit(codeql, config, sourceRoot, processName, registriesInput, apiDetails, logger) {
    fs.mkdirSync(config.dbLocation, { recursive: true });
    try {
-        // When parsing the codeql config in the CLI, we have not yet created the qlconfig file.
-        // So, create it now.
-        // If we are parsing the config file in the Action, then the qlconfig file was already created
-        // before the `pack download` command was invoked. It is not required for the init command.
-        let registriesAuthTokens;
-        let qlconfigFile;
-        if (await (0, feature_flags_1.useCodeScanningConfigInCli)(codeql, features)) {
-            ({ registriesAuthTokens, qlconfigFile } =
-                await configUtils.generateRegistries(registriesInput, config.tempDir, logger));
-        }
+        const { registriesAuthTokens, qlconfigFile } = await configUtils.generateRegistries(registriesInput, config.tempDir, logger);
        await configUtils.wrapEnvironment({
            GITHUB_TOKEN: apiDetails.auth,
            CODEQL_REGISTRIES_AUTH: registriesAuthTokens,
        }, 
        // Init a database cluster
-        async () => await codeql.databaseInitCluster(config, sourceRoot, processName, features, qlconfigFile, logger));
+        async () => await codeql.databaseInitCluster(config, sourceRoot, processName, qlconfigFile, logger));
    }
    catch (e) {
        throw processError(e);
@@ -77,6 +66,15 @@ async function runInit(codeql, config, sourceRoot, processName, registriesInput,
    return await (0, tracer_config_1.getCombinedTracerConfig)(config);
 }
 exports.runInit = runInit;
+function printPathFiltersWarning(config, logger) {
+    // Index include/exclude/filters only work in javascript/python/ruby.
+    // If any other languages are detected/configured then show a warning.
+    if ((config.originalUserInput.paths?.length !== 0 ||
+        config.originalUserInput["paths-ignore"]?.length !== 0) &&
+        !config.languages.every(languages_1.isScannedLanguage)) {
+        logger.warning('The "paths"/"paths-ignore" fields of the config only have effect for JavaScript, Python, and Ruby');
+    }
+}
 /**
 * Possibly convert this error into a UserError in order to avoid
 * counting this error towards our internal error budget.
@@ -1 +1 @@
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@@ -38,15 +38,11 @@ const util = __importStar(require("./util"));
 function getTestConfig(tmpDir) {
    return {
        languages: [languages_1.Language.java],
-        queries: {},
-        pathsIgnore: [],
-        paths: [],
        originalUserInput: {},
        tempDir: tmpDir,
        codeQLCmd: "",
        gitHubVersion: { type: util.GitHubVariant.DOTCOM },
        dbLocation: path.resolve(tmpDir, "codeql_databases"),
-        packs: {},
        debugMode: false,
        debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
        debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
@@ -1 +1 @@
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@@ -80,9 +80,6 @@ const stubCodeql = (0, codeql_1.setCodeQL)({
 });
 const testConfigWithoutTmpDir = {
    languages: [languages_1.Language.javascript, languages_1.Language.cpp],
-    queries: {},
-    pathsIgnore: [],
-    paths: [],
    originalUserInput: {},
    tempDir: "",
    codeQLCmd: "",
@@ -90,7 +87,6 @@ const testConfigWithoutTmpDir = {
        type: util.GitHubVariant.DOTCOM,
    },
    dbLocation: "",
-    packs: {},
    debugMode: false,
    debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
    debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
@@ -106,15 +102,11 @@ const testConfigWithoutTmpDir = {
 function getTestConfigWithTempDir(tmpDir) {
    return {
        languages: [languages_1.Language.javascript, languages_1.Language.ruby],
-        queries: {},
-        pathsIgnore: [],
-        paths: [],
        originalUserInput: {},
        tempDir: tmpDir,
        codeQLCmd: "",
        gitHubVersion: { type: util.GitHubVariant.DOTCOM },
        dbLocation: path.resolve(tmpDir, "codeql_databases"),
-        packs: {},
        debugMode: false,
        debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
        debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
@@ -1 +1 @@
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truncated
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Line 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@@ -26,10 +26,9 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
    return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.pruneInvalidResults = exports.validateUniqueCategory = exports.waitForProcessing = exports.buildPayload = exports.validateSarifFileSchema = exports.uploadFromActions = exports.findSarifFilesInDir = exports.populateRunAutomationDetails = void 0;
+exports.validateUniqueCategory = exports.waitForProcessing = exports.buildPayload = exports.validateSarifFileSchema = exports.uploadFromActions = exports.findSarifFilesInDir = exports.populateRunAutomationDetails = void 0;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
-const process_1 = require("process");
 const zlib_1 = __importDefault(require("zlib"));
 const core = __importStar(require("@actions/core"));
 const file_url_1 = __importDefault(require("file-url"));
@@ -264,8 +263,6 @@ async function uploadFiles(sarifFiles, repositoryNwo, commitOid, ref, analysisKe
    let sarif = combineSarifFiles(sarifFiles);
    sarif = await fingerprints.addFingerprints(sarif, sourceRoot, logger);
    sarif = populateRunAutomationDetails(sarif, category, analysisKey, environment);
-    if (process_1.env["CODEQL_DISABLE_SARIF_PRUNING"] !== "true")
-        sarif = pruneInvalidResults(sarif, logger);
    const toolNames = util.getToolNames(sarif);
    validateUniqueCategory(sarif);
    const sarifPayload = JSON.stringify(sarif);
@@ -432,37 +429,6 @@ exports.validateUniqueCategory = validateUniqueCategory;
 function sanitize(str) {
    return (str ?? "_").replace(/[^a-zA-Z0-9_]/g, "_").toLocaleUpperCase();
 }
-function pruneInvalidResults(sarif, logger) {
-    let pruned = 0;
-    const newRuns = [];
-    for (const run of sarif.runs || []) {
-        if (run.tool?.driver?.name === "CodeQL" &&
-            run.tool?.driver?.semanticVersion === "2.11.2") {
-            // Version 2.11.2 of the CodeQL CLI had many false positives in the
-            // rb/weak-cryptographic-algorithm query which we prune here. The
-            // issue is tracked in https://github.com/github/codeql/issues/11107.
-            const newResults = [];
-            for (const result of run.results || []) {
-                if (result.ruleId === "rb/weak-cryptographic-algorithm" &&
-                    (result.message?.text?.includes(" MD5 ") ||
-                        result.message?.text?.includes(" SHA1 "))) {
-                    pruned += 1;
-                    continue;
-                }
-                newResults.push(result);
-            }
-            newRuns.push({ ...run, results: newResults });
-        }
-        else {
-            newRuns.push(run);
-        }
-    }
-    if (pruned > 0) {
-        logger.info(`Pruned ${pruned} results believed to be invalid from SARIF file.`);
-    }
-    return { ...sarif, runs: newRuns };
-}
-exports.pruneInvalidResults = pruneInvalidResults;
 /**
 * An error that occurred due to an invalid SARIF upload request.
 */
@@ -1 +1 @@
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Line truncated
@@ -32,7 +32,6 @@ const ava_1 = __importDefault(require("ava"));
 const logging_1 = require("./logging");
 const testing_utils_1 = require("./testing-utils");
 const uploadLib = __importStar(require("./upload-lib"));
-const upload_lib_1 = require("./upload-lib");
 const util_1 = require("./util");
 (0, testing_utils_1.setupTests)(ava_1.default);
 ava_1.default.beforeEach(() => {
@@ -184,55 +183,6 @@ ava_1.default.beforeEach(() => {
    t.throws(() => uploadLib.validateUniqueCategory(sarif1));
    t.throws(() => uploadLib.validateUniqueCategory(sarif2));
 });
-(0, ava_1.default)("pruneInvalidResults", (t) => {
-    const loggedMessages = [];
-    const mockLogger = {
-        info: (message) => {
-            loggedMessages.push(message);
-        },
-    };
-    const sarif = {
-        runs: [
-            {
-                tool: otherTool,
-                results: [resultWithBadMessage1, resultWithGoodMessage],
-            },
-            {
-                tool: affectedCodeQLVersion,
-                results: [
-                    resultWithOtherRuleId,
-                    resultWithBadMessage1,
-                    resultWithBadMessage2,
-                    resultWithGoodMessage,
-                ],
-            },
-            {
-                tool: unaffectedCodeQLVersion,
-                results: [resultWithBadMessage1, resultWithGoodMessage],
-            },
-        ],
-    };
-    const result = (0, upload_lib_1.pruneInvalidResults)(sarif, mockLogger);
-    const expected = {
-        runs: [
-            {
-                tool: otherTool,
-                results: [resultWithBadMessage1, resultWithGoodMessage],
-            },
-            {
-                tool: affectedCodeQLVersion,
-                results: [resultWithOtherRuleId, resultWithGoodMessage],
-            },
-            {
-                tool: unaffectedCodeQLVersion,
-                results: [resultWithBadMessage1, resultWithGoodMessage],
-            },
-        ],
-    };
-    t.deepEqual(result, expected);
-    t.deepEqual(loggedMessages.length, 1);
-    t.assert(loggedMessages[0].includes("Pruned 2 results"));
-});
 (0, ava_1.default)("accept results with invalid artifactLocation.uri value", (t) => {
    const loggedMessages = [];
    const mockLogger = {
@@ -245,56 +195,6 @@ ava_1.default.beforeEach(() => {
    t.deepEqual(loggedMessages.length, 1);
    t.deepEqual(loggedMessages[0], "Warning: 'not a valid URI' is not a valid URI in 'instance.runs[0].results[0].locations[0].physicalLocation.artifactLocation.uri'.");
 });
-const affectedCodeQLVersion = {
-    driver: {
-        name: "CodeQL",
-        semanticVersion: "2.11.2",
-    },
-};
-const unaffectedCodeQLVersion = {
-    driver: {
-        name: "CodeQL",
-        semanticVersion: "2.11.3",
-    },
-};
-const otherTool = {
-    driver: {
-        name: "Some other tool",
-        semanticVersion: "2.11.2",
-    },
-};
-const resultWithOtherRuleId = {
-    ruleId: "doNotPrune",
-    message: {
-        text: "should not be pruned even though it says MD5 in it",
-    },
-    locations: [],
-    partialFingerprints: {},
-};
-const resultWithGoodMessage = {
-    ruleId: "rb/weak-cryptographic-algorithm",
-    message: {
-        text: "should not be pruned SHA128 is not a FP",
-    },
-    locations: [],
-    partialFingerprints: {},
-};
-const resultWithBadMessage1 = {
-    ruleId: "rb/weak-cryptographic-algorithm",
-    message: {
-        text: "should be pruned MD5 is a FP",
-    },
-    locations: [],
-    partialFingerprints: {},
-};
-const resultWithBadMessage2 = {
-    ruleId: "rb/weak-cryptographic-algorithm",
-    message: {
-        text: "should be pruned SHA1 is a FP",
-    },
-    locations: [],
-    partialFingerprints: {},
-};
 function createMockSarif(id, tool) {
    return {
        runs: [
				`@@ -1 +0,0 @@`
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				`@@ -1 +0,0 @@`
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