Merge pull request #1547 from github/update-v2.2.5-237a258d2

Merge main into releases/v2
Update changelog for v2.2.5
2026-10-20 05:15:24 +03:00 · 2023-02-24 19:26:08 +00:00 · 2023-02-24 19:01:14 +00:00 · 2023-02-23 15:46:39 +00:00 · 2023-02-22 18:38:46 +00:00 · 2023-02-22 18:18:37 +00:00
16 changed files with 408 additions and 65 deletions
@@ -10,6 +10,10 @@ fi
 # When updating this, make sure to update the npm version in
 # `.github/workflows/update-dependencies.yml` too.
 sudo npm install --force -g npm@9.2.0
+
+# clean the npm cache to ensure we don't have any files owned by root
+sudo npm cache clean --force
+
 # Reinstall modules and then clean to remove absolute paths
 # Use 'npm ci' instead of 'npm install' as this is intended to be reproducible
 npm ci
@@ -1,8 +1,8 @@
 # CodeQL Action Changelog

-## [UNRELEASED]
+## 2.2.5 - 24 Feb 2023

-No user facing changes.
+- Update default CodeQL bundle version to 2.12.3. [#1543](https://github.com/github/codeql-action/pull/1543)

 ## 2.2.4 - 10 Feb 2023

@@ -126,6 +126,7 @@ async function finalizeDatabaseCreation(config, threadsFlag, memoryFlag, logger)
 async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag, automationDetailsId, config, logger, featureEnablement) {
    const statusReport = {};
    const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
+    const queryFlags = [memoryFlag, threadsFlag];
    await util.logCodeScanningConfigInCli(codeql, featureEnablement, logger);
    for (const language of config.languages) {
        const queries = config.queries[language];
@@ -140,7 +141,7 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
                // another to interpret the results.
                logger.startGroup(`Running queries for ${language}`);
                const startTimeBuiltIn = new Date().getTime();
-                await runQueryGroup(language, "all", undefined, undefined);
+                await runQueryGroup(language, "all", undefined, undefined, true);
                // TODO should not be using `builtin` here. We should be using `all` instead.
                // The status report does not support `all` yet.
                statusReport[`analyze_builtin_queries_${language}_duration_ms`] =
@@ -164,24 +165,29 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
                    !hasPackWithCustomQueries) {
                    throw new Error(`Unable to analyze ${language} as no queries were selected for this language`);
                }
+                const customQueryIndices = [];
+                for (let i = 0; i < queries.custom.length; ++i) {
+                    if (queries.custom[i].queries.length > 0) {
+                        customQueryIndices.push(i);
+                    }
+                }
                logger.startGroup(`Running queries for ${language}`);
                const querySuitePaths = [];
-                if (queries["builtin"].length > 0) {
+                if (queries.builtin.length > 0) {
                    const startTimeBuiltIn = new Date().getTime();
-                    querySuitePaths.push((await runQueryGroup(language, "builtin", createQuerySuiteContents(queries["builtin"], queryFilters), undefined)));
+                    querySuitePaths.push((await runQueryGroup(language, "builtin", createQuerySuiteContents(queries.builtin, queryFilters), undefined, customQueryIndices.length === 0 && packsWithVersion.length === 0)));
                    statusReport[`analyze_builtin_queries_${language}_duration_ms`] =
                        new Date().getTime() - startTimeBuiltIn;
                }
                const startTimeCustom = new Date().getTime();
                let ranCustom = false;
-                for (let i = 0; i < queries["custom"].length; ++i) {
-                    if (queries["custom"][i].queries.length > 0) {
-                        querySuitePaths.push((await runQueryGroup(language, `custom-${i}`, createQuerySuiteContents(queries["custom"][i].queries, queryFilters), queries["custom"][i].searchPath)));
-                        ranCustom = true;
-                    }
+                for (const i of customQueryIndices) {
+                    querySuitePaths.push((await runQueryGroup(language, `custom-${i}`, createQuerySuiteContents(queries.custom[i].queries, queryFilters), queries.custom[i].searchPath, i === customQueryIndices[customQueryIndices.length - 1] &&
+                        packsWithVersion.length === 0)));
+                    ranCustom = true;
                }
                if (packsWithVersion.length > 0) {
-                    querySuitePaths.push(await runQueryPacks(language, "packs", packsWithVersion, queryFilters));
+                    querySuitePaths.push(await runQueryPacks(language, "packs", packsWithVersion, queryFilters, true));
                    ranCustom = true;
                }
                if (ranCustom) {
@@ -218,7 +224,7 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
        const databasePath = util.getCodeQLDatabasePath(config, language);
        return await codeql.databasePrintBaseline(databasePath);
    }
-    async function runQueryGroup(language, type, querySuiteContents, searchPath) {
+    async function runQueryGroup(language, type, querySuiteContents, searchPath, optimizeForLastQueryRun) {
        const databasePath = util.getCodeQLDatabasePath(config, language);
        // Pass the queries to codeql using a file instead of using the command
        // line to avoid command line length restrictions, particularly on windows.
@@ -229,11 +235,11 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
            fs.writeFileSync(querySuitePath, querySuiteContents);
            logger.debug(`Query suite file for ${language}-${type}...\n${querySuiteContents}`);
        }
-        await codeql.databaseRunQueries(databasePath, searchPath, querySuitePath, memoryFlag, threadsFlag);
+        await codeql.databaseRunQueries(databasePath, searchPath, querySuitePath, queryFlags, optimizeForLastQueryRun);
        logger.debug(`BQRS results produced for ${language} (queries: ${type})"`);
        return querySuitePath;
    }
-    async function runQueryPacks(language, type, packs, queryFilters) {
+    async function runQueryPacks(language, type, packs, queryFilters, optimizeForLastQueryRun) {
        const databasePath = util.getCodeQLDatabasePath(config, language);
        for (const pack of packs) {
            logger.debug(`Running query pack for ${language}-${type}: ${pack}`);
@@ -243,7 +249,7 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
        const querySuitePath = `${databasePath}-queries-${type}.qls`;
        fs.writeFileSync(querySuitePath, yaml.dump(querySuite));
        logger.debug(`BQRS results produced for ${language} (queries: ${type})"`);
-        await codeql.databaseRunQueries(databasePath, undefined, querySuitePath, memoryFlag, threadsFlag);
+        await codeql.databaseRunQueries(databasePath, undefined, querySuitePath, queryFlags, optimizeForLastQueryRun);
        return querySuitePath;
    }
 }
@@ -1 +1 @@
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truncated
@@ -30,8 +30,10 @@ const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const ava_1 = __importDefault(require("ava"));
 const yaml = __importStar(require("js-yaml"));
+const sinon = __importStar(require("sinon"));
 const analyze_1 = require("./analyze");
 const codeql_1 = require("./codeql");
+const feature_flags_1 = require("./feature-flags");
 const languages_1 = require("./languages");
 const logging_1 = require("./logging");
 const testing_utils_1 = require("./testing-utils");
@@ -188,6 +190,126 @@ const util = __importStar(require("./util"));
        }
    }
 });
+function mockCodeQL() {
+    return {
+        getVersion: async () => "2.12.2",
+        databaseRunQueries: sinon.spy(),
+        databaseInterpretResults: async () => "",
+        databasePrintBaseline: async () => "",
+    };
+}
+function createBaseConfig(tmpDir) {
+    return {
+        languages: [],
+        queries: {},
+        pathsIgnore: [],
+        paths: [],
+        originalUserInput: {},
+        tempDir: "tempDir",
+        codeQLCmd: "",
+        gitHubVersion: {
+            type: util.GitHubVariant.DOTCOM,
+        },
+        dbLocation: path.resolve(tmpDir, "codeql_databases"),
+        packs: {},
+        debugMode: false,
+        debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
+        debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
+        augmentationProperties: {
+            injectedMlQueries: false,
+            packsInputCombines: false,
+            queriesInputCombines: false,
+        },
+        trapCaches: {},
+        trapCacheDownloadTime: 0,
+    };
+}
+function createQueryConfig(builtin, custom) {
+    return {
+        builtin,
+        custom: custom.map((c) => ({ searchPath: "/search", queries: [c] })),
+    };
+}
+async function runQueriesWithConfig(config, features) {
+    for (const language of config.languages) {
+        fs.mkdirSync(util.getCodeQLDatabasePath(config, language), {
+            recursive: true,
+        });
+    }
+    return (0, analyze_1.runQueries)("sarif-folder", "--memFlag", "--addSnippetsFlag", "--threadsFlag", undefined, config, (0, logging_1.getRunnerLogger)(true), (0, testing_utils_1.createFeatures)(features));
+}
+function getDatabaseRunQueriesCalls(mock) {
+    return mock.databaseRunQueries.getCalls();
+}
+(0, ava_1.default)("optimizeForLastQueryRun for one language", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        const codeql = mockCodeQL();
+        (0, codeql_1.setCodeQL)(codeql);
+        const config = createBaseConfig(tmpDir);
+        config.languages = [languages_1.Language.cpp];
+        config.queries.cpp = createQueryConfig(["foo.ql"], []);
+        await runQueriesWithConfig(config, []);
+        t.deepEqual(getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]), [true]);
+    });
+});
+(0, ava_1.default)("optimizeForLastQueryRun for two languages", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        const codeql = mockCodeQL();
+        (0, codeql_1.setCodeQL)(codeql);
+        const config = createBaseConfig(tmpDir);
+        config.languages = [languages_1.Language.cpp, languages_1.Language.java];
+        config.queries.cpp = createQueryConfig(["foo.ql"], []);
+        config.queries.java = createQueryConfig(["bar.ql"], []);
+        await runQueriesWithConfig(config, []);
+        t.deepEqual(getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]), [true, true]);
+    });
+});
+(0, ava_1.default)("optimizeForLastQueryRun for two languages, with custom queries", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        const codeql = mockCodeQL();
+        (0, codeql_1.setCodeQL)(codeql);
+        const config = createBaseConfig(tmpDir);
+        config.languages = [languages_1.Language.cpp, languages_1.Language.java];
+        config.queries.cpp = createQueryConfig(["foo.ql"], ["c1.ql", "c2.ql"]);
+        config.queries.java = createQueryConfig(["bar.ql"], ["c3.ql"]);
+        await runQueriesWithConfig(config, []);
+        t.deepEqual(getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]), [false, false, true, false, true]);
+    });
+});
+(0, ava_1.default)("optimizeForLastQueryRun for two languages, with custom queries and packs", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        const codeql = mockCodeQL();
+        (0, codeql_1.setCodeQL)(codeql);
+        const config = createBaseConfig(tmpDir);
+        config.languages = [languages_1.Language.cpp, languages_1.Language.java];
+        config.queries.cpp = createQueryConfig(["foo.ql"], ["c1.ql", "c2.ql"]);
+        config.queries.java = createQueryConfig(["bar.ql"], ["c3.ql"]);
+        config.packs.cpp = ["a/cpp-pack1@0.1.0"];
+        config.packs.java = ["b/java-pack1@0.2.0", "b/java-pack2@0.3.3"];
+        await runQueriesWithConfig(config, []);
+        t.deepEqual(getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]), [false, false, false, true, false, false, true]);
+    });
+});
+(0, ava_1.default)("optimizeForLastQueryRun for one language, CliConfigFileEnabled", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        const codeql = mockCodeQL();
+        (0, codeql_1.setCodeQL)(codeql);
+        const config = createBaseConfig(tmpDir);
+        config.languages = [languages_1.Language.cpp];
+        await runQueriesWithConfig(config, [feature_flags_1.Feature.CliConfigFileEnabled]);
+        t.deepEqual(getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]), [true]);
+    });
+});
+(0, ava_1.default)("optimizeForLastQueryRun for two languages, CliConfigFileEnabled", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        const codeql = mockCodeQL();
+        (0, codeql_1.setCodeQL)(codeql);
+        const config = createBaseConfig(tmpDir);
+        config.languages = [languages_1.Language.cpp, languages_1.Language.java];
+        await runQueriesWithConfig(config, [feature_flags_1.Feature.CliConfigFileEnabled]);
+        t.deepEqual(getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]), [true, true]);
+    });
+});
 (0, ava_1.default)("validateQueryFilters", (t) => {
    t.notThrows(() => (0, analyze_1.validateQueryFilters)([]));
    t.notThrows(() => (0, analyze_1.validateQueryFilters)(undefined));
@@ -1 +1 @@
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@@ -472,17 +472,20 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                throw new Error(`Unexpected output from codeql resolve queries: ${e}`);
            }
        },
-        async databaseRunQueries(databasePath, extraSearchPath, querySuitePath, memoryFlag, threadsFlag) {
+        async databaseRunQueries(databasePath, extraSearchPath, querySuitePath, flags, optimizeForLastQueryRun) {
            const codeqlArgs = [
                "database",
                "run-queries",
-                memoryFlag,
-                threadsFlag,
+                ...flags,
                databasePath,
                "--min-disk-free=1024",
                "-v",
                ...getExtraOptionsFromEnv(["database", "run-queries"]),
            ];
+            if (optimizeForLastQueryRun &&
+                (await util.supportExpectDiscardedCache(this))) {
+                codeqlArgs.push("--expect-discarded-cache");
+            }
            if (extraSearchPath !== undefined) {
                codeqlArgs.push("--additional-packs", extraSearchPath);
            }
@@ -1 +1 @@
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@@ -1,6 +1,6 @@
 {
-    "bundleVersion": "codeql-bundle-20230207",
-    "cliVersion": "2.12.2",
-    "priorBundleVersion": "codeql-bundle-20230120",
-    "priorCliVersion": "2.12.1"
+    "bundleVersion": "codeql-bundle-20230217",
+    "cliVersion": "2.12.3",
+    "priorBundleVersion": "codeql-bundle-20230207",
+    "priorCliVersion": "2.12.2"
 }
@@ -26,7 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
    return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.parseMatrixInput = exports.isHostedRunner = exports.checkForTimeout = exports.withTimeout = exports.tryGetFolderBytes = exports.listFolder = exports.doesDirectoryExist = exports.logCodeScanningConfigInCli = exports.useCodeScanningConfigInCli = exports.isInTestMode = exports.getMlPoweredJsQueriesStatus = exports.getMlPoweredJsQueriesPack = exports.ML_POWERED_JS_QUERIES_PACK_NAME = exports.isGoodVersion = exports.delay = exports.bundleDb = exports.codeQlVersionAbove = exports.getCachedCodeQlVersion = exports.cacheCodeQlVersion = exports.isHTTPError = exports.UserError = exports.HTTPError = exports.getRequiredEnvParam = exports.enrichEnvironment = exports.initializeEnvironment = exports.EnvVar = exports.assertNever = exports.apiVersionInRange = exports.DisallowedAPIVersionReason = exports.checkGitHubVersionInRange = exports.getGitHubVersion = exports.GitHubVariant = exports.parseGitHubUrl = exports.getCodeQLDatabasePath = exports.getThreadsFlag = exports.getThreadsFlagValue = exports.getAddSnippetsFlag = exports.getMemoryFlag = exports.getMemoryFlagValue = exports.withTmpDir = exports.getToolNames = exports.getExtraOptionsEnvParam = exports.DID_AUTOBUILD_GO_ENV_VAR_NAME = exports.DEFAULT_DEBUG_DATABASE_NAME = exports.DEFAULT_DEBUG_ARTIFACT_NAME = exports.GITHUB_DOTCOM_URL = void 0;
+exports.parseMatrixInput = exports.isHostedRunner = exports.checkForTimeout = exports.withTimeout = exports.tryGetFolderBytes = exports.listFolder = exports.doesDirectoryExist = exports.logCodeScanningConfigInCli = exports.useCodeScanningConfigInCli = exports.isInTestMode = exports.getMlPoweredJsQueriesStatus = exports.getMlPoweredJsQueriesPack = exports.ML_POWERED_JS_QUERIES_PACK_NAME = exports.supportExpectDiscardedCache = exports.isGoodVersion = exports.delay = exports.bundleDb = exports.codeQlVersionAbove = exports.getCachedCodeQlVersion = exports.cacheCodeQlVersion = exports.isHTTPError = exports.UserError = exports.HTTPError = exports.getRequiredEnvParam = exports.enrichEnvironment = exports.initializeEnvironment = exports.EnvVar = exports.assertNever = exports.apiVersionInRange = exports.DisallowedAPIVersionReason = exports.checkGitHubVersionInRange = exports.getGitHubVersion = exports.GitHubVariant = exports.parseGitHubUrl = exports.getCodeQLDatabasePath = exports.getThreadsFlag = exports.getThreadsFlagValue = exports.getAddSnippetsFlag = exports.getMemoryFlag = exports.getMemoryFlagValue = exports.withTmpDir = exports.getToolNames = exports.getExtraOptionsEnvParam = exports.DID_AUTOBUILD_GO_ENV_VAR_NAME = exports.DEFAULT_DEBUG_DATABASE_NAME = exports.DEFAULT_DEBUG_ARTIFACT_NAME = exports.GITHUB_DOTCOM_URL = void 0;
 const fs = __importStar(require("fs"));
 const os = __importStar(require("os"));
 const path = __importStar(require("path"));
@@ -475,6 +475,13 @@ function isGoodVersion(versionSpec) {
    return !BROKEN_VERSIONS.includes(versionSpec);
 }
 exports.isGoodVersion = isGoodVersion;
+/**
+ * Checks whether the CodeQL CLI supports the `--expect-discarded-cache` command-line flag.
+ */
+async function supportExpectDiscardedCache(codeQL) {
+    return codeQlVersionAbove(codeQL, "2.12.1");
+}
+exports.supportExpectDiscardedCache = supportExpectDiscardedCache;
 exports.ML_POWERED_JS_QUERIES_PACK_NAME = "codeql/javascript-experimental-atm-queries";
 /**
 * Gets the ML-powered JS query pack to add to the analysis if a repo is opted into the ML-powered
@@ -1 +1 @@
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@@ -3,15 +3,18 @@ import * as path from "path";

 import test, { ExecutionContext } from "ava";
 import * as yaml from "js-yaml";
+import * as sinon from "sinon";

 import {
  convertPackToQuerySuiteEntry,
  createQuerySuiteContents,
  runQueries,
  validateQueryFilters,
+  QueriesStatusReport,
 } from "./analyze";
-import { setCodeQL } from "./codeql";
-import { Config } from "./config-utils";
+import { CodeQL, setCodeQL } from "./codeql";
+import { Config, QueriesWithSearchPath } from "./config-utils";
+import { Feature } from "./feature-flags";
 import { Language } from "./languages";
 import { getRunnerLogger } from "./logging";
 import { setupTests, setupActionsVars, createFeatures } from "./testing-utils";
@@ -229,6 +232,175 @@ test("status report fields and search path setting", async (t) => {
  }
 });

+function mockCodeQL(): Partial<CodeQL> {
+  return {
+    getVersion: async () => "2.12.2",
+    databaseRunQueries: sinon.spy(),
+    databaseInterpretResults: async () => "",
+    databasePrintBaseline: async () => "",
+  };
+}
+
+function createBaseConfig(tmpDir: string): Config {
+  return {
+    languages: [],
+    queries: {},
+    pathsIgnore: [],
+    paths: [],
+    originalUserInput: {},
+    tempDir: "tempDir",
+    codeQLCmd: "",
+    gitHubVersion: {
+      type: util.GitHubVariant.DOTCOM,
+    } as util.GitHubVersion,
+    dbLocation: path.resolve(tmpDir, "codeql_databases"),
+    packs: {},
+    debugMode: false,
+    debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
+    debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
+    augmentationProperties: {
+      injectedMlQueries: false,
+      packsInputCombines: false,
+      queriesInputCombines: false,
+    },
+    trapCaches: {},
+    trapCacheDownloadTime: 0,
+  };
+}
+
+function createQueryConfig(
+  builtin: string[],
+  custom: string[]
+): { builtin: string[]; custom: QueriesWithSearchPath[] } {
+  return {
+    builtin,
+    custom: custom.map((c) => ({ searchPath: "/search", queries: [c] })),
+  };
+}
+
+async function runQueriesWithConfig(
+  config: Config,
+  features: Feature[]
+): Promise<QueriesStatusReport> {
+  for (const language of config.languages) {
+    fs.mkdirSync(util.getCodeQLDatabasePath(config, language), {
+      recursive: true,
+    });
+  }
+  return runQueries(
+    "sarif-folder",
+    "--memFlag",
+    "--addSnippetsFlag",
+    "--threadsFlag",
+    undefined,
+    config,
+    getRunnerLogger(true),
+    createFeatures(features)
+  );
+}
+
+function getDatabaseRunQueriesCalls(mock: Partial<CodeQL>) {
+  return (mock.databaseRunQueries as sinon.SinonSpy).getCalls();
+}
+
+test("optimizeForLastQueryRun for one language", async (t) => {
+  return await util.withTmpDir(async (tmpDir) => {
+    const codeql = mockCodeQL();
+    setCodeQL(codeql);
+    const config: Config = createBaseConfig(tmpDir);
+    config.languages = [Language.cpp];
+    config.queries.cpp = createQueryConfig(["foo.ql"], []);
+
+    await runQueriesWithConfig(config, []);
+    t.deepEqual(
+      getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]),
+      [true]
+    );
+  });
+});
+
+test("optimizeForLastQueryRun for two languages", async (t) => {
+  return await util.withTmpDir(async (tmpDir) => {
+    const codeql = mockCodeQL();
+    setCodeQL(codeql);
+    const config: Config = createBaseConfig(tmpDir);
+    config.languages = [Language.cpp, Language.java];
+    config.queries.cpp = createQueryConfig(["foo.ql"], []);
+    config.queries.java = createQueryConfig(["bar.ql"], []);
+
+    await runQueriesWithConfig(config, []);
+    t.deepEqual(
+      getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]),
+      [true, true]
+    );
+  });
+});
+
+test("optimizeForLastQueryRun for two languages, with custom queries", async (t) => {
+  return await util.withTmpDir(async (tmpDir) => {
+    const codeql = mockCodeQL();
+    setCodeQL(codeql);
+    const config: Config = createBaseConfig(tmpDir);
+    config.languages = [Language.cpp, Language.java];
+    config.queries.cpp = createQueryConfig(["foo.ql"], ["c1.ql", "c2.ql"]);
+    config.queries.java = createQueryConfig(["bar.ql"], ["c3.ql"]);
+
+    await runQueriesWithConfig(config, []);
+    t.deepEqual(
+      getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]),
+      [false, false, true, false, true]
+    );
+  });
+});
+
+test("optimizeForLastQueryRun for two languages, with custom queries and packs", async (t) => {
+  return await util.withTmpDir(async (tmpDir) => {
+    const codeql = mockCodeQL();
+    setCodeQL(codeql);
+    const config: Config = createBaseConfig(tmpDir);
+    config.languages = [Language.cpp, Language.java];
+    config.queries.cpp = createQueryConfig(["foo.ql"], ["c1.ql", "c2.ql"]);
+    config.queries.java = createQueryConfig(["bar.ql"], ["c3.ql"]);
+    config.packs.cpp = ["a/cpp-pack1@0.1.0"];
+    config.packs.java = ["b/java-pack1@0.2.0", "b/java-pack2@0.3.3"];
+    await runQueriesWithConfig(config, []);
+    t.deepEqual(
+      getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]),
+      [false, false, false, true, false, false, true]
+    );
+  });
+});
+
+test("optimizeForLastQueryRun for one language, CliConfigFileEnabled", async (t) => {
+  return await util.withTmpDir(async (tmpDir) => {
+    const codeql = mockCodeQL();
+    setCodeQL(codeql);
+    const config: Config = createBaseConfig(tmpDir);
+    config.languages = [Language.cpp];
+
+    await runQueriesWithConfig(config, [Feature.CliConfigFileEnabled]);
+    t.deepEqual(
+      getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]),
+      [true]
+    );
+  });
+});
+
+test("optimizeForLastQueryRun for two languages, CliConfigFileEnabled", async (t) => {
+  return await util.withTmpDir(async (tmpDir) => {
+    const codeql = mockCodeQL();
+    setCodeQL(codeql);
+    const config: Config = createBaseConfig(tmpDir);
+    config.languages = [Language.cpp, Language.java];
+
+    await runQueriesWithConfig(config, [Feature.CliConfigFileEnabled]);
+    t.deepEqual(
+      getDatabaseRunQueriesCalls(codeql).map((c) => c.args[4]),
+      [true, true]
+    );
+  });
+});
+
 test("validateQueryFilters", (t) => {
  t.notThrows(() => validateQueryFilters([]));
  t.notThrows(() => validateQueryFilters(undefined));
@@ -212,6 +212,7 @@ export async function runQueries(
  const statusReport: QueriesStatusReport = {};

  const codeql = await getCodeQL(config.codeQLCmd);
+  const queryFlags = [memoryFlag, threadsFlag];

  await util.logCodeScanningConfigInCli(codeql, featureEnablement, logger);

@@ -231,7 +232,7 @@ export async function runQueries(
        // another to interpret the results.
        logger.startGroup(`Running queries for ${language}`);
        const startTimeBuiltIn = new Date().getTime();
-        await runQueryGroup(language, "all", undefined, undefined);
+        await runQueryGroup(language, "all", undefined, undefined, true);
        // TODO should not be using `builtin` here. We should be using `all` instead.
        // The status report does not support `all` yet.
        statusReport[`analyze_builtin_queries_${language}_duration_ms`] =
@@ -267,16 +268,24 @@ export async function runQueries(
          );
        }

+        const customQueryIndices: number[] = [];
+        for (let i = 0; i < queries.custom.length; ++i) {
+          if (queries.custom[i].queries.length > 0) {
+            customQueryIndices.push(i);
+          }
+        }
+
        logger.startGroup(`Running queries for ${language}`);
        const querySuitePaths: string[] = [];
-        if (queries["builtin"].length > 0) {
+        if (queries.builtin.length > 0) {
          const startTimeBuiltIn = new Date().getTime();
          querySuitePaths.push(
            (await runQueryGroup(
              language,
              "builtin",
-              createQuerySuiteContents(queries["builtin"], queryFilters),
-              undefined
+              createQuerySuiteContents(queries.builtin, queryFilters),
+              undefined,
+              customQueryIndices.length === 0 && packsWithVersion.length === 0
            )) as string
          );
          statusReport[`analyze_builtin_queries_${language}_duration_ms`] =
@@ -284,21 +293,18 @@ export async function runQueries(
        }
        const startTimeCustom = new Date().getTime();
        let ranCustom = false;
-        for (let i = 0; i < queries["custom"].length; ++i) {
-          if (queries["custom"][i].queries.length > 0) {
-            querySuitePaths.push(
-              (await runQueryGroup(
-                language,
-                `custom-${i}`,
-                createQuerySuiteContents(
-                  queries["custom"][i].queries,
-                  queryFilters
-                ),
-                queries["custom"][i].searchPath
-              )) as string
-            );
-            ranCustom = true;
-          }
+        for (const i of customQueryIndices) {
+          querySuitePaths.push(
+            (await runQueryGroup(
+              language,
+              `custom-${i}`,
+              createQuerySuiteContents(queries.custom[i].queries, queryFilters),
+              queries.custom[i].searchPath,
+              i === customQueryIndices[customQueryIndices.length - 1] &&
+                packsWithVersion.length === 0
+            )) as string
+          );
+          ranCustom = true;
        }
        if (packsWithVersion.length > 0) {
          querySuitePaths.push(
@@ -306,7 +312,8 @@ export async function runQueries(
              language,
              "packs",
              packsWithVersion,
-              queryFilters
+              queryFilters,
+              true
            )
          );
          ranCustom = true;
@@ -373,7 +380,8 @@ export async function runQueries(
    language: Language,
    type: string,
    querySuiteContents: string | undefined,
-    searchPath: string | undefined
+    searchPath: string | undefined,
+    optimizeForLastQueryRun: boolean
  ): Promise<string | undefined> {
    const databasePath = util.getCodeQLDatabasePath(config, language);
    // Pass the queries to codeql using a file instead of using the command
@@ -391,8 +399,8 @@ export async function runQueries(
      databasePath,
      searchPath,
      querySuitePath,
-      memoryFlag,
-      threadsFlag
+      queryFlags,
+      optimizeForLastQueryRun
    );

    logger.debug(`BQRS results produced for ${language} (queries: ${type})"`);
@@ -402,7 +410,8 @@ export async function runQueries(
    language: Language,
    type: string,
    packs: string[],
-    queryFilters: configUtils.QueryFilter[]
+    queryFilters: configUtils.QueryFilter[],
+    optimizeForLastQueryRun: boolean
  ): Promise<string> {
    const databasePath = util.getCodeQLDatabasePath(config, language);

@@ -424,8 +433,8 @@ export async function runQueries(
      databasePath,
      undefined,
      querySuitePath,
-      memoryFlag,
-      threadsFlag
+      queryFlags,
+      optimizeForLastQueryRun
    );

    return querySuitePath;
@@ -148,13 +148,19 @@ export interface CodeQL {
  ): Promise<void>;
  /**
   * Run 'codeql database run-queries'.
+   *
+   * @param optimizeForLastQueryRun Whether to apply additional optimization for
+   *                                the last database query run in the action.
+   *                                It is always safe to set it to false.
+   *                                It should be set to true only for the very
+   *                                last databaseRunQueries() call.
   */
  databaseRunQueries(
    databasePath: string,
    extraSearchPath: string | undefined,
    querySuitePath: string | undefined,
-    memoryFlag: string,
-    threadsFlag: string
+    flags: string[],
+    optimizeForLastQueryRun: boolean
  ): Promise<void>;
  /**
   * Run 'codeql database interpret-results'.
@@ -789,19 +795,24 @@ export async function getCodeQLForCmd(
      databasePath: string,
      extraSearchPath: string | undefined,
      querySuitePath: string | undefined,
-      memoryFlag: string,
-      threadsFlag: string
+      flags: string[],
+      optimizeForLastQueryRun: boolean
    ): Promise<void> {
      const codeqlArgs = [
        "database",
        "run-queries",
-        memoryFlag,
-        threadsFlag,
+        ...flags,
        databasePath,
        "--min-disk-free=1024", // Try to leave at least 1GB free
        "-v",
        ...getExtraOptionsFromEnv(["database", "run-queries"]),
      ];
+      if (
+        optimizeForLastQueryRun &&
+        (await util.supportExpectDiscardedCache(this))
+      ) {
+        codeqlArgs.push("--expect-discarded-cache");
+      }
      if (extraSearchPath !== undefined) {
        codeqlArgs.push("--additional-packs", extraSearchPath);
      }
@@ -1,6 +1,6 @@
 {
-  "bundleVersion": "codeql-bundle-20230207",
-  "cliVersion": "2.12.2",
-  "priorBundleVersion": "codeql-bundle-20230120",
-  "priorCliVersion": "2.12.1"
+  "bundleVersion": "codeql-bundle-20230217",
+  "cliVersion": "2.12.3",
+  "priorBundleVersion": "codeql-bundle-20230207",
+  "priorCliVersion": "2.12.2"
 }
@@ -571,6 +571,15 @@ export function isGoodVersion(versionSpec: string) {
  return !BROKEN_VERSIONS.includes(versionSpec);
 }

+/**
+ * Checks whether the CodeQL CLI supports the `--expect-discarded-cache` command-line flag.
+ */
+export async function supportExpectDiscardedCache(
+  codeQL: CodeQL
+): Promise<boolean> {
+  return codeQlVersionAbove(codeQL, "2.12.1");
+}
+
 export const ML_POWERED_JS_QUERIES_PACK_NAME =
  "codeql/javascript-experimental-atm-queries";
Author	SHA1	Message	Date
Henry Mercer	32dc499307	Merge pull request #1547 from github/update-v2.2.5-237a258d2 Merge main into releases/v2	2023-02-24 19:26:08 +00:00
github-actions[bot]	b742728ac2	Update changelog for v2.2.5	2023-02-24 19:01:14 +00:00
Alexander Eyers-Taylor	237a258d2b	Merge pull request #1543 from github/alexet/update-2.12.3 Update default CodeQL bundle version to 2.12.3	2023-02-23 15:46:39 +00:00
Alexander Eyers-Taylor	5972e6d72e	Fix lib file	2023-02-22 18:38:46 +00:00
Alexander Eyers-Taylor	164027e682	Fix bundle versions	2023-02-22 18:18:37 +00:00
Chuan-kai Lin	3dde1f3512	Merge pull request #1540 from cklin/expect-discarded-cache Set --expect-discarded-cache option	2023-02-17 12:36:05 -08:00
Chuan-kai Lin	d7d7567b0e	Unit tests for optimizeForLastQueryRun	2023-02-17 11:19:38 -08:00
Chuan-kai Lin	0e4e857bab	Set optimizeForLastQueryRun on last run	2023-02-17 11:17:42 -08:00
Chuan-kai Lin	08d1f21d4f	Calculate customQueryIndices early This refactoring commit changes runQueries() to calculate the set of indices with non-empty custom queries early. Doing so allows us to check early on whether there are any custom queries to run.	2023-02-17 11:14:08 -08:00
Andrew Eisenberg	f3bd25eefa	Merge pull request #1544 from github/aeisenberg/clean-cache Clean the npm cache before running install	2023-02-17 10:50:03 -08:00
Andrew Eisenberg	41f1810e52	Clean the npm cache before running install	2023-02-17 09:54:53 -08:00
Alexander Eyers-Taylor	d87ad69338	Update default CodeQL bundle version to 2.12.3	2023-02-17 15:49:39 +00:00
Chuan-kai Lin	8242edb8ed	databaseRunQueries(): add optimizeForLastQueryRun parameter	2023-02-15 08:45:13 -08:00
Chuan-kai Lin	3095a09bb0	databaseRunQueries(): accept a list of flags This refactoring commit changes databaseRunQueries() to accept a list of flags instead of separate memory and threads flags.	2023-02-14 11:53:52 -08:00